FC875646

Overview
NameFC875646
Unique NameFC875646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig695 contig Ccv1_Contig695:691..1093. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: SCP34_ARATH (Serine carboxypeptidase-like 34 OS=Arabidopsis thaliana GN=SCPL34 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.796e-19
Identity = 41/74 (55.41%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWYTDGEVGGYVLGYKGVIFTTVRGAGHMVPTNQPQRALIMISSFL 222
            GDTDGR+PVT++RYS+  L L +   W PWYT  +VGG+ + Y G++F TVRGAGH VPT +P+ AL +I  FL
Sbjct:  416 GDTDGRIPVTATRYSLKKLGLKIVQDWTPWYTKLQVGGWTVEYDGLMFVTVRGAGHQVPTFKPREALQLIHHFL 489          
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: SCP27_ARATH (Serine carboxypeptidase-like 27 OS=Arabidopsis thaliana GN=SCPL27 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.570e-19
Identity = 41/75 (54.67%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWYTDGEVGGYVLGYKGVIFTTVRGAGHMVPTNQPQRALIMISSFLE 225
            GDTD  VP+T++RYS++AL L   T WYPWY  G+VGG+   YKG+   TV GAGH VP ++P++A I+  SFLE
Sbjct:  378 GDTDAVVPITATRYSVDALKLATITNWYPWYDHGKVGGWSQVYKGLTLVTVAGAGHEVPLHRPRQAFILFRSFLE 452          
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: CBP2_HORVU (Serine carboxypeptidase 2 OS=Hordeum vulgare GN=CBP2 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.570e-19
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWYTD-GEVGGYVLGYKGVIFTTVRGAGHMVPTNQPQRALIMISSFLEG 228
            GDTD  VP+T++RYSI AL L   T+WYPWY D  EVGG+   YKG+   +VRGAGH VP ++P++ALI+   FL+G
Sbjct:  387 GDTDAVVPLTATRYSIGALGLATTTSWYPWYDDLQEVGGWSQVYKGLTLVSVRGAGHEVPLHRPRQALILFQQFLQG 463          
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: SCP29_ARATH (Serine carboxypeptidase-like 29 OS=Arabidopsis thaliana GN=SCPL29 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.877e-18
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWYTDGEVGGYVLGYKGVIFTTVRGAGHMVPTNQPQRALIMISSFLEG 228
            GD D  VPVTS+RYSI+ALNL   +A+ PWY DG+VGG+   Y G+ F TVRGAGH VP ++P++AL +  +F+ G
Sbjct:  383 GDADAVVPVTSTRYSIDALNLRPLSAYGPWYLDGQVGGWSQQYAGLNFVTVRGAGHEVPLHRPKQALALFKAFISG 458          
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: CBP21_HORVU (Serine carboxypeptidase II-1 (Fragment) OS=Hordeum vulgare GN=CXP;2-1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.757e-18
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWYTDGEVGGYVLGYKGVIFTTVRGAGHMVPTNQPQRALIMISSFLE 225
            GD D  VP+T++RYSI+AL LP  T WYPWY + EV G+   YKG+   T+RGAGH VP ++PQ+AL +   FL+
Sbjct:  236 GDADSVVPLTATRYSIDALYLPTVTNWYPWYDEEEVAGWCQVYKGLTLVTIRGAGHEVPLHRPQQALKLFEHFLQ 310          
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: HNLS_SORBI (P-(S)-hydroxymandelonitrile lyase OS=Sorghum bicolor PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.409e-18
Identity = 42/96 (43.75%), Postives = 66/96 (68.75%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWY---TDGEVGGYVLGYKGVIFTTVRGAGHMVPTNQPQRALIMISSFLEGILPPSS*EKTSKTVIPA 279
            GDTD  VPV+S+R S+ AL LPV+T+WYPWY   T+ EVGG+ + Y+G+ + +  GAGH+VP ++P +A ++   FL+G   P   E+ +  ++P+
Sbjct:  411 GDTDSVVPVSSTRRSLAALELPVKTSWYPWYMAPTEREVGGWSVQYEGLTYVSPSGAGHLVPVHRPAQAFLLFKQFLKG--EPMPAEEKNDILLPS 504          
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: SCP33_ARATH (Serine carboxypeptidase-like 33 OS=Arabidopsis thaliana GN=SCPL33 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.093e-17
Identity = 42/83 (50.60%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWYTDGEVGGYVLGYK-GVIFTTVRGAGHMVPTNQPQRALIMISSFLEGILPPSS 246
            GD DGRVPV  SRY + AL + V++ W  W+ + +VGG +  Y+ G+ F TVRGAGH+VP N+P+ AL +  SFL G   PSS
Sbjct:  389 GDADGRVPVIGSRYCVEALGISVKSEWRSWFHNHQVGGRITEYEGGLTFVTVRGAGHLVPLNKPEEALALFRSFLNGQELPSS 471          
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: SCP26_ARATH (Serine carboxypeptidase-like 26 OS=Arabidopsis thaliana GN=SCPL26 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.428e-17
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWYTDGEVGGYVLGYKGVIFTTVRGAGHMVPTNQPQRALIMISSFLE 225
            GDTD  VP+T +RYSI AL L   + WYPW  DG+VGG+   YKG+   T+ GAGH VP  +P+RA ++  SFL+
Sbjct:  372 GDTDSVVPITGTRYSIRALKLQPLSKWYPWNDDGQVGGWSQVYKGLTLVTIHGAGHEVPLFRPRRAFLLFQSFLD 446          
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: SCP35_ARATH (Serine carboxypeptidase-like 35 OS=Arabidopsis thaliana GN=SCPL35 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.692e-16
Identity = 41/82 (50.00%), Postives = 53/82 (64.63%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWYTDGEVGGYVLGYKGVI-FTTVRGAGHMVPTNQPQRALIMISSFLEGILPPS 243
            GDTDGRVPVTS+RYSI  + L VE+ W  W+   +V G+V  Y G + F TVRGAGH VP   P ++L + S F+  +  PS
Sbjct:  396 GDTDGRVPVTSTRYSIKKMGLKVESPWRSWFHKSQVAGWVETYAGGLNFVTVRGAGHQVPALAPAQSLTLFSHFISSVPLPS 477          
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: SCP25_ARATH (Serine carboxypeptidase-like 25 OS=Arabidopsis thaliana GN=SCPL25 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.023e-15
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWYTDGEVGGYVLGYKGVIFTTVRGAGHMVPTNQPQRALIMISSFLEG 228
            GD D  VPVT++RYS+  L+L  +  WYPWY   +VGG+   Y+G+ F TVRGAGH VP  +P+ A  +   FL G
Sbjct:  392 GDVDSVVPVTATRYSLARLSLSTKLPWYPWYVKKQVGGWTEVYEGLTFVTVRGAGHEVPLFKPRAAFELFKYFLRG 467          
The following BLAST results are available for this feature:
BLAST of FC875646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SCP34_ARATH5.796e-1955.41Serine carboxypeptidase-like 34 OS=Arabidopsis tha... [more]
SCP27_ARATH7.570e-1954.67Serine carboxypeptidase-like 27 OS=Arabidopsis tha... [more]
CBP2_HORVU7.570e-1955.84Serine carboxypeptidase 2 OS=Hordeum vulgare GN=CB... [more]
SCP29_ARATH2.877e-1855.26Serine carboxypeptidase-like 29 OS=Arabidopsis tha... [more]
CBP21_HORVU3.757e-1853.33Serine carboxypeptidase II-1 (Fragment) OS=Hordeum... [more]
HNLS_SORBI6.409e-1843.75P-(S)-hydroxymandelonitrile lyase OS=Sorghum bicol... [more]
SCP33_ARATH1.093e-1750.60Serine carboxypeptidase-like 33 OS=Arabidopsis tha... [more]
SCP26_ARATH1.428e-1752.00Serine carboxypeptidase-like 26 OS=Arabidopsis tha... [more]
SCP35_ARATH2.692e-1650.00Serine carboxypeptidase-like 35 OS=Arabidopsis tha... [more]
SCP25_ARATH1.023e-1548.68Serine carboxypeptidase-like 25 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionC31401C05EF CTVClemen1 Citrus clementina cDNA clone C31401C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875646 ID=FC875646; Name=FC875646; organism=Citrus clementina; type=EST; length=403bp
GGTGACACAGATGGGCGAGTTCCAGTGACATCCTCTAGATACTCCATCAA
TGCTCTGAACCTTCCGGTTGAAACTGCTTGGTACCCATGGTACACTGATG
GTGAGGTTGGTGGATATGTGCTCGGGTACAAGGGAGTGATATTCACTACT
GTTAGAGGGGCAGGGCATATGGTTCCTACTAACCAGCCACAGCGAGCTCT
CATCATGATCTCATCTTTCCTCGAGGGGATACTTCCTCCCTCCTCTTAAG
AAAAGACATCGAAAACTGTTATCCCAGCTTGACATATTAGTTATTTCGCA
ATTTGAAATTTCAGTTCCATTATGCATTCTGAGCACGAAGAGTTCCTATG
CTATTATACTTGTATGTCCTAAATAATAGTAACCAGAATAAATGAATTAT
CNT
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