FC875656

Overview
NameFC875656
Unique NameFC875656
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15126 contig Ccv1_Contig15126:470..1187. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1)

HSP 1 Score: 424.091 bits (1089), Expect = 3.688e-118
Identity = 206/239 (86.19%), Postives = 222/239 (92.89%), Query Frame = 1
Query:    1 KIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            KII+    +AKY+I VKQIAKFVV LGDK+SPTD+EEG+RVGVDRNKYQIQIPLPPKID SVTMM VEEKPD+TY DVGGCKEQIEK+REVVE+P+LHPEKFV LGIDPPKGVL YGPPGTGKTL ARAVANRTDA F+RVIGSELVQKYVGEGARMVR+LFQMARSKKACI+FFDEVDAIGGARFDDG GGDNEVQRTMLE++NQLDGFD RG  +VLMATNRPDTLDPALLRPGRLD
Sbjct:   95 KIIDVGKPNAKYIITVKQIAKFVVALGDKLSPTDVEEGIRVGVDRNKYQIQIPLPPKIDASVTMMQVEEKPDITYKDVGGCKEQIEKLREVVEMPLLHPEKFVNLGIDPPKGVLMYGPPGTGKTLCARAVANRTDAAFVRVIGSELVQKYVGEGARMVRDLFQMARSKKACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLD 333          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS7_PONAB (26S protease regulatory subunit 7 OS=Pongo abelii GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 422.935 bits (1086), Expect = 8.215e-118
Identity = 203/239 (84.94%), Postives = 223/239 (93.31%), Query Frame = 1
Query:    1 KIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            KII  +SED KY+INVKQ AKFVV L D+V+PTDIEEGMRVGVDRNKYQI IPLPPKIDP+VTMM VEEKPDVTY+DVGGCKEQIEK+REVVE P+LHPE+FV LGI+PPKGVL +GPPGTGKTL ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELF+MAR+KKAC++FFDE+DAIGGARFDDG GGDNEVQRTMLE++NQLDGFD RG  +VLMATNRPDTLDPAL+RPGRLD
Sbjct:  100 KIITADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLD 338          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS7_RAT (26S protease regulatory subunit 7 OS=Rattus norvegicus GN=Psmc2 PE=1 SV=3)

HSP 1 Score: 422.55 bits (1085), Expect = 1.073e-117
Identity = 203/239 (84.94%), Postives = 223/239 (93.31%), Query Frame = 1
Query:    1 KIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            KIIN +SED KY+INVKQ AKFVV L D+V+PTDIEEGMRVGVDRNKYQI IPLPPKIDP+VTMM VEEKPDVTY+DVGGCKEQIEK+REVVE P+LHPE+FV LGI+PPKGVL +GPPGTGKTL ARAVANRTDACFI VIGSELVQKYVGEGARMVRELF+MAR+KKAC++FFDE+DAIGGARFDDG GGDNEVQRTMLE++NQLDGFD RG  +VLMATNRPDTLDPAL+RPGRLD
Sbjct:  100 KIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIPVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLD 338          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS7_CAEEL (26S protease regulatory subunit 7 OS=Caenorhabditis elegans GN=rpt-1 PE=1 SV=1)

HSP 1 Score: 411.379 bits (1056), Expect = 2.474e-114
Identity = 196/239 (82.01%), Postives = 219/239 (91.63%), Query Frame = 1
Query:    1 KIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            KII  +  D +Y+INVKQ AKFVV L D V+PTDIEEGMRVGVDRNKYQI +PLP KIDP+VTMM VEEKPDVTY+DVGGCK+QIEK+REVVE P+LHPE++V LGI+PPKGVL YGPPGTGKTL ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELF+MAR+KKAC++FFDE+DA+GGARFDDG GGDNEVQRTMLE++NQLDGFD RG  +VLMATNRPDTLDPAL+RPGRLD
Sbjct:  102 KIITSDKHDPRYLINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKIDPTVTMMQVEEKPDVTYSDVGGCKDQIEKLREVVETPLLHPERYVNLGIEPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAVGGARFDDGQGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLD 340          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS7_YEAST (26S protease regulatory subunit 7 homolog OS=Saccharomyces cerevisiae GN=RPT1 PE=1 SV=1)

HSP 1 Score: 410.609 bits (1054), Expect = 4.219e-114
Identity = 195/234 (83.33%), Postives = 220/234 (94.02%), Query Frame = 1
Query:   16 NSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            + EDAKYVIN+KQIAKFVVGLG++VSPTDIEEGMRVGVDR+KY I++PLPP+IDPSVTMMTVEEKPDVTY+DVGGCK+QIEK+REVVELP+L PE+F  LGIDPPKG+L YGPPGTGKTL ARAVANRTDA FIRVIGSELVQKYVGEGARMVRELF+MAR+KKACI+FFDE+DA+GGARFDDG GGDNEVQRTMLE++ QLDGFD RG  +V+ ATNRP+TLDPALLRPGR+D
Sbjct:  139 DDEDAKYVINLKQIAKFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRID 372          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS7_SCHPO (26S protease regulatory subunit 7 homolog OS=Schizosaccharomyces pombe GN=rpt1 PE=1 SV=2)

HSP 1 Score: 400.979 bits (1029), Expect = 3.343e-111
Identity = 193/234 (82.48%), Postives = 215/234 (91.88%), Query Frame = 1
Query:   16 NSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            ++E   YVIN+KQIAKFVV LG++VSPTDIEEGMRVG DRNKY IQ+PLPPKIDPSVTMM VEEKPDVTY DVGGCKEQIE++REVVELP+L PE+FVKLGIDPPKG++ YGPPGTGKTL ARAVANRTDA FIRVIGSELVQKYVGEGARMVRELF+MAR+KKACI+FFDE+DAIGGARFDDG GGDNEVQRTMLE++ QLDGFD RG  +VL ATNRP+TLD AL+RPGR+D
Sbjct:  109 SAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVLFATNRPNTLDEALMRPGRID 342          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 266.544 bits (680), Expect = 9.840e-71
Identity = 123/231 (53.25%), Postives = 172/231 (74.46%), Query Frame = 1
Query:   25 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            + K+++      ++VVG    ++  ++++G RV +D     I   LP ++DP V  M+ E+  +++Y+DVGG  EQI ++REVVELP+++PE F ++GI PPKG L +GPPGTGKTLLARAVA++ D  F++V+ S +V KY+GE ARM+RE+F  AR  + CIVF DE+DAIGG RF +G   D E+QRT++E++NQLDGFD+ GK +V+MATNRPDTLDPALLRPGRLD
Sbjct:   83 EEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDSLGKVKVIMATNRPDTLDPALLRPGRLD 313          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS8A_ARATH (26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.884e-70
Identity = 134/230 (58.26%), Postives = 168/230 (73.04%), Query Frame = 1
Query:   31 KYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVG-GDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            K ++ V    K+VV +   +  T I    RV +  + Y + + LP K+DP V +M VE+ PD TY+ +GG  +QI++++EV+ELP+ HPE F  LGI  PKGVL YGPPGTGKTLLARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MAR     I+F DE+D+IG AR + G G GD+EVQRTMLE++NQLDGF+A  K +VLMATNR D LD ALLRPGR+D
Sbjct:   96 KVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRID 325          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS8_MANSE (26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.378e-70
Identity = 134/239 (56.07%), Postives = 171/239 (71.55%), Query Frame = 1
Query:    1 KIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            +++ P  +  K ++ V    KFVV L   V   D+    RV +    Y +   LP K+DP V++M VE+ PD TY  VGG  +QI++++EV+ELP+ HPE F  LGI  PKGVL YGPPGTGKTLLARAVA+ T+  FIRV GSELVQK++GEG+RMVRELF MAR     I+F DE+D+IG +R + G GGD+EVQRTMLE++NQLDGF+A    +V+MATNR D LDPALLRPGR+D
Sbjct:   71 EVVKP-MDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRID 308          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS8_DROME (26S protease regulatory subunit 8 OS=Drosophila melanogaster GN=Pros45 PE=1 SV=2)

HSP 1 Score: 263.462 bits (672), Expect = 8.330e-70
Identity = 133/239 (55.65%), Postives = 171/239 (71.55%), Query Frame = 1
Query:    1 KIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            +++ P  +  K ++ V    KFVV L   +   D+    RV +    Y +   LP K+DP V++M VE+ PD TY  VGG  +QI++++EV+ELP+ HPE F  LGI  PKGVL YGPPGTGKTLLARAVA+ T+  FIRV GSELVQK++GEG+RMVRELF MAR     I+F DE+D+IG +R + G GGD+EVQRTMLE++NQLDGF+A    +V+MATNR D LDPALLRPGR+D
Sbjct:   74 EVVKP-MDKKKVLVKVHPEGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRID 311          
The following BLAST results are available for this feature:
BLAST of FC875656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
PRS7_DICDI3.688e-11886.1926S protease regulatory subunit 7 OS=Dictyostelium... [more]
PRS7_PONAB8.215e-11884.9426S protease regulatory subunit 7 OS=Pongo abelii ... [more]
PRS7_RAT1.073e-11784.9426S protease regulatory subunit 7 OS=Rattus norveg... [more]
PRS7_CAEEL2.474e-11482.0126S protease regulatory subunit 7 OS=Caenorhabditi... [more]
PRS7_YEAST4.219e-11483.3326S protease regulatory subunit 7 homolog OS=Sacch... [more]
PRS7_SCHPO3.343e-11182.4826S protease regulatory subunit 7 homolog OS=Schiz... [more]
PRS10_CAEEL9.840e-7153.25Probable 26S protease regulatory subunit S10B OS=C... [more]
PRS8A_ARATH4.884e-7058.2626S protease regulatory subunit 8 homolog A OS=Ara... [more]
PRS8_MANSE6.378e-7056.0726S protease regulatory subunit 8 OS=Manduca sexta... [more]
PRS8_DROME8.330e-7055.6526S protease regulatory subunit 8 OS=Drosophila me... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31401D04EF CTVClemen1 Citrus clementina cDNA clone C31401D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875656 ID=FC875656; Name=FC875656; organism=Citrus clementina; type=EST; length=718bp
AAGATTATCAATCCAAATTCTGAAGATGCTAAATATGTAATAAATGTTAA
GCAAATTGCCAAGTTTGTCGTTGGGCTTGGTGACAAAGTTTCCCCTACTG
ATATTGAAGAAGGGATGCGTGTGGGGGTTGACCGGAATAAATATCAAATT
CAAATTCCCTTGCCTCCAAAAATTGATCCAAGTGTAACCATGATGACTGT
GGAAGAGAAACCAGATGTGACATATAATGATGTTGGTGGATGTAAGGAGC
AGATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAG
AAGTTCGTAAAGCTTGGAATTGATCCTCCTAAGGGTGTTCTATGCTATGG
TCCTCCAGGGACTGGTAAAACGCTTCTAGCCAGAGCTGTGGCTAATAGAA
CTGATGCTTGTTTCATTCGTGTCATTGGAAGTGAACTTGTTCAGAAGTAT
GTAGGTGAGGGAGCCCGGATGGTTCGTGAACTGTTTCAGATGGCACGTTC
GAAAAAGGCATGTATTGTATTTTTCGATGAAGTTGATGCCATAGGAGGTG
CACGTTTTGATGATGGCGTCGGTGGAGACAATGAGGTTCAACGTACAATG
CTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGAGGAAAACATCA
AGTTCTGATGGCTACAAACAGGCCTGACACACTTGATCCTGCGCTGCTAC
GTCCTGGACGGTTGGATC
back to top