FC875656

Overview
NameFC875656
Unique NameFC875656
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.018e-67
Identity = 124/231 (53.68%), Postives = 164/231 (71.00%), Query Frame = 1
Query:   25 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            + K +I      KFVV     ++  ++  G +V +++    +   LP   DPSV  M V + P++ Y  +GG + QI +++E VELP+L PE F K+GI+PPKGVL YGPPGTGKTLLA+AVANRT A FIR+IGSELVQKY+GEGARMVRELF++A+ K   I+F DE+D+IG  R D    GD EVQRT+++++ ++DGFD RG  ++L ATNRPD LDPALLRPGR D
Sbjct:   92 NGKMIIKSSTGPKFVVNSSQFINSKEVYPGAKVALNQQSLAVIEVLPTVKDPSVLGMEVVDSPEIDYQSIGGLEAQINELKETVELPLLKPELFQKVGIEPPKGVLLYGPPGTGKTLLAKAVANRTKATFIRIIGSELVQKYIGEGARMVRELFELAKEKSPSIIFIDEIDSIGAKRLDSITSGDREVQRTLVQLLAEMDGFDPRGNVRILAATNRPDILDPALLRPGRFD 322          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.330e-67
Identity = 119/232 (51.29%), Postives = 168/232 (72.41%), Query Frame = 1
Query:   22 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            +D + ++      +FVV +   +  + +  G RV +D+    I   LP   DP+V    V E+P+VTYND+GG K+Q++++RE +ELP+ HPE F ++GIDPPKGVL YGPPG GKTL+A+A+A+  +A FIRV+GSELV+KY+GEGAR+V ELF++A+ K   I+F DE+DAIG  R D+  GG+ EV RT+++++ ++DGFD RG  +V+ ATNRPD LDPALLRPGR D
Sbjct:   69 DDDRAIVQNYNGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPAVLGFEVVERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKAIAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRLDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFD 300          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS8_YEAST (26S protease regulatory subunit 8 homolog OS=Saccharomyces cerevisiae GN=RPT6 PE=1 SV=4)

HSP 1 Score: 254.988 bits (650), Expect = 2.963e-67
Identity = 126/231 (54.55%), Postives = 167/231 (72.29%), Query Frame = 1
Query:   25 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            D K ++ V+   K++V +   ++  D++   RV +  + Y +   L  K DP V++M VE+ PD TY+ VGG  +QI++++EV+ELP+ HPE F  LGI  PKGV+ YGPPGTGKTLLARAVA+ TD  FIRV G+ELVQKY+GEG+RMVRELF MAR     I+F DE+D+IG  R +   GGD+EVQRTMLE++NQLDGF+     +++MATNR D LDPALLRPGR+D
Sbjct:   81 DKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRID 311          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.870e-67
Identity = 117/232 (50.43%), Postives = 166/232 (71.55%), Query Frame = 1
Query:   22 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            ++ + ++      ++VVG   KV    +  G RV +D     I   LP ++DP V  M  E+  +++Y+ VGG  +QI ++RE +ELP+++PE F+++GI PPKGVL YGPPGTGKTLLARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  + CI+F DE+DAIGG RF +G   D E+QRT++E++NQLDGFD  GK +++MATNRPD LDPALLRPGRLD
Sbjct:   71 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLD 302          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS8_DICDI (26S protease regulatory subunit 8 OS=Dictyostelium discoideum GN=psmC5 PE=1 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 3.870e-67
Identity = 132/230 (57.39%), Postives = 164/230 (71.30%), Query Frame = 1
Query:   31 KYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGV-GGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            K ++ V    KFVV +   V    +    R  +    Y +   LP KIDP V++M VE+ PD TY+ VGG  +QI++++EV+ELP+ HPE F  LGI  PKGVL YGPPGTGKTLLARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MAR     I+F DE+D+IG +R + G  GGD+EVQRTMLE++NQLDGF++    +VLM TNR D LDPALLRPGR+D
Sbjct:   80 KVLVKVNPEGKFVVDIDPTVDIAKLTPSTRAALKHESYTLHRILPNKIDPLVSLMKVEKIPDSTYDMVGGLDKQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFIMAREHAPSIIFMDEIDSIGSSRGESGSGGGDSEVQRTMLELLNQLDGFESTKNIKVLMCTNRIDILDPALLRPGRID 309          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 3.870e-67
Identity = 115/232 (49.57%), Postives = 168/232 (72.41%), Query Frame = 1
Query:   22 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            +  ++++      ++VVG  + V  + + +G+RV +D     I   LP ++DP V  M++E+  D+++  VGG  EQI ++REV+ELP+ +PE F+++GI PPKGVL YGPPGTGKTLLARAVA      F++V+ S +V KY+GE AR++RE+F  A+  + C++F DE+DAIGG RF +G   D E+QRT++E++NQ+DGFD  G+ +++MATNRPDTLDPALLRPGRLD
Sbjct:   64 DSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLD 295          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.054e-67
Identity = 119/232 (51.29%), Postives = 168/232 (72.41%), Query Frame = 1
Query:   22 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            +D + ++      +FVV +   +    ++ G RV +D+    I   LP + DPSV    V E+P VTYND+GG ++Q++++RE +ELP+ HPE F ++GI+PPKGVL YGPPG GKTL+A+AVAN  +A FIRV+GSELV+K++GEGAR+V ELF++A+ K   I+F DE+DAIG  R D+  GG+ EV RT+++++ ++DGFD RG  +V+ ATNRPD LDPALLRPGR D
Sbjct:   70 DDERAIVQNYNGPRFVVRIAPWIERDKLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPKVTYNDIGGLEKQLQELREAIELPLKHPELFEQVGIEPPKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFD 301          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.054e-67
Identity = 117/232 (50.43%), Postives = 166/232 (71.55%), Query Frame = 1
Query:   22 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            ++ + ++      ++VVG   KV    +  G RV +D     I   LP ++DP V  M  E+  +++Y+ VGG  +QI ++RE +ELP+++PE F+++GI PPKGVL YGPPGTGKTLLARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  + CI+F DE+DAIGG RF +G   D E+QRT++E++NQLDGFD  GK +++MATNRPD LDPALLRPGRLD
Sbjct:   71 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDNLGKVKMIMATNRPDVLDPALLRPGRLD 302          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.600e-67
Identity = 122/232 (52.59%), Postives = 165/232 (71.12%), Query Frame = 1
Query:   22 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            +D + ++      +FVV +   +    ++ G RV +D+    I   LP + DPSV    V EKP VTY D+GG + Q+ ++RE VELP+ HPE F K+GI+PPKGVL YGPPG GKTL+A+AVAN  +A FIRV+GSELV+K++GEGAR+V ELF+MA+ K   I+F DE+DAIG  R D+  GG+ EV RT+++++ ++DGFD RG  +V+ ATNRPD LDPALLRPGR D
Sbjct:   70 DDDRAIVQNYNGPRFVVRIAPWIERDKLKPGSRVALDQRTMAIVELLPTEKDPSVLGFEVIEKPRVTYQDIGGLERQLAELREAVELPLKHPELFEKVGIEPPKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHELFEMAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFD 301          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.600e-67
Identity = 119/232 (51.29%), Postives = 167/232 (71.98%), Query Frame = 1
Query:   22 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            +D + ++      +FVV +   +    +  G RV +D+    I   LP   DP+V    V E+P+VTYND+GG K+Q++++RE +ELP+ HPE F ++GIDPPKGVL YGPPG GKTL+A+A+A+  +A FIRV+GSELV+KY+GEGAR+V ELF++A+ K   I+F DE+DAIG  R D+  GG+ EV RT+++++ ++DGFD RG  +V+ ATNRPD LDPALLRPGR D
Sbjct:   72 DDDRAIVQNYNGPRFVVRIAPWIERDKLRPGARVALDQRTMAIIELLPSSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFD 303          
The following BLAST results are available for this feature:
BLAST of FC875656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
PSMR_UNCMA1.018e-6753.68Proteasome-activating nucleotidase OS=Uncultured m... [more]
PSMR_PYRFU1.330e-6751.29Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PRS8_YEAST2.963e-6754.5526S protease regulatory subunit 8 homolog OS=Sacch... [more]
PS10B_ARATH3.870e-6750.4326S protease regulatory subunit S10B homolog B OS=... [more]
PRS8_DICDI3.870e-6757.3926S protease regulatory subunit 8 OS=Dictyostelium... [more]
PRS10_SCHPO3.870e-6749.57Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]
PSMR_PYRKO5.054e-6751.29Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
PS10A_ARATH5.054e-6750.4326S protease regulatory subunit 10B homolog A OS=A... [more]
PSMR_THEGJ6.600e-6752.59Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_PYRAB6.600e-6751.29Proteasome-activating nucleotidase OS=Pyrococcus a... [more]

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Properties
Property NameValue
Genbank descriptionC31401D04EF CTVClemen1 Citrus clementina cDNA clone C31401D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875656 ID=FC875656; Name=FC875656; organism=Citrus clementina; type=EST; length=718bp
AAGATTATCAATCCAAATTCTGAAGATGCTAAATATGTAATAAATGTTAA
GCAAATTGCCAAGTTTGTCGTTGGGCTTGGTGACAAAGTTTCCCCTACTG
ATATTGAAGAAGGGATGCGTGTGGGGGTTGACCGGAATAAATATCAAATT
CAAATTCCCTTGCCTCCAAAAATTGATCCAAGTGTAACCATGATGACTGT
GGAAGAGAAACCAGATGTGACATATAATGATGTTGGTGGATGTAAGGAGC
AGATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAG
AAGTTCGTAAAGCTTGGAATTGATCCTCCTAAGGGTGTTCTATGCTATGG
TCCTCCAGGGACTGGTAAAACGCTTCTAGCCAGAGCTGTGGCTAATAGAA
CTGATGCTTGTTTCATTCGTGTCATTGGAAGTGAACTTGTTCAGAAGTAT
GTAGGTGAGGGAGCCCGGATGGTTCGTGAACTGTTTCAGATGGCACGTTC
GAAAAAGGCATGTATTGTATTTTTCGATGAAGTTGATGCCATAGGAGGTG
CACGTTTTGATGATGGCGTCGGTGGAGACAATGAGGTTCAACGTACAATG
CTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGAGGAAAACATCA
AGTTCTGATGGCTACAAACAGGCCTGACACACTTGATCCTGCGCTGCTAC
GTCCTGGACGGTTGGATC
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