FC875656

Overview
NameFC875656
Unique NameFC875656
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: KATL2_XENLA (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus laevis GN=katnal2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17
Identity = 43/117 (36.75%), Postives = 71/117 (60.68%), Query Frame = 1
Query:  205 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGAR 555
            + P+V ++D+ G       ++E V  P+ +P+ F  + + P KG+L YGPPGTGKTLLA+AVA   +  F  +  S +V K+ G+  ++VR LF++AR      +F DE++++   R
Sbjct:  251 QNPNVRWDDIIGLDAAKRLVKEAVVYPIRYPQLFTGI-LSPWKGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQR 366          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: YCF2_MESVI (Protein ycf2 OS=Mesostigma viride GN=ycf2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16
Identity = 54/185 (29.19%), Postives = 90/185 (48.65%), Query Frame = 1
Query:  217 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGAR------------FDDGVGGDN------EVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            +T+ D+GG +   +++  V  L      K        P G L  GPPGTGKTL+A+A++   +  ++ V GS+   +  G     V +LF+  ++   CI++ DE+D+I   R              D + G N           +++ +  +DG+  R    ++ ATNR +TLD A++RPGR D
Sbjct:  346 ITFRDIGGMESLKQELATVAFLL-----KQKNYSNSYPMGYLFAGPPGTGKTLMAKAMSYEAETPYLYVEGSQFRCREEGVANARVDDLFKQIQNISPCILYIDEIDSIAERREEANKQLEQLKTIGDSIEGSNINIDQKPSDTVLMQFLIYMDGYKKRNDLIIIGATNRIETLDDAIMRPGRFD 525          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: FTSHC_ARATH (Cell division protease ftsH homolog 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 54/153 (35.29%), Postives = 74/153 (48.37%), Query Frame = 1
Query:  286 MLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG---------FDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            M +P ++ +  +   +GVL  GPPGTGKTL AR +A  +   F+   G+E        GA  + E+F +AR      VF DE+DAI G         D   + T   ++ QLDG         F  R     + ATNRPD LD   +R GR+D
Sbjct:  512 MGNPMQYYEKDVAFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAAKINEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGEKEKTGIDRFSLRQAVIFICATNRPDELDLEFVRSGRID 659          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: FIGL2_HUMAN (Putative fidgetin-like protein 2 OS=Homo sapiens GN=FIGNL2 PE=5 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 61/186 (32.80%), Postives = 89/186 (47.85%), Query Frame = 1
Query:  163 PPKIDPS----VTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLM--ATNRPDTLDPALLR 702
            P  +DP     VT   V+  P V + DV G       + E +  P+L P  +    + PP+ VL +GP G GK LL R +A +  A  +R+ G+ L      EGAR+++  F  AR +   ++   E++A+  AR DDG      +Q  +L     LDG    G   VL+   T+RP  LD A  R
Sbjct:  367 PKGVDPGALELVTSKMVDCGPPVQWADVAGQGALKAALEEELVWPLLRPPAYPG-SLRPPRTVLLFGPRGAGKALLGRCLATQLGATLLRLRGATLAAPGAAEGARLLQAAFAAARCRPPSVLLISELEALLPAR-DDGAAAGGALQVPLLAC---LDGGCGAGADGVLVVGTTSRPAALDEATRR 547          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: Y4KL_RHISN (Uncharacterized AAA family ATPase y4kL OS=Rhizobium sp. (strain NGR234) GN=NGR_a02840 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.085e-12
Identity = 47/129 (36.43%), Postives = 69/129 (53.49%), Query Frame = 1
Query:  316 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLR 702
            G+     +L  GPPG GKTL A   A        RV    L+  Y+GE A  +R+ F+ AR K+ C++FFDE DA+  AR  D  G  NE++R +  ++  +D    +G   ++ ATN   +LD A+ R
Sbjct:  114 GLKVRSKMLFCGPPGCGKTLCAEIFAAELGLPLFRVKLDRLISSYLGETATNIRKTFEFAR-KQPCVLFFDEFDAL--ARTRDDSGEHNELRRVVNSLLLFIDNMQPKG--FLIAATNLDRSLDAAIWR 237          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: YCF46_GUITH (Uncharacterized AAA domain-containing protein ycf46 OS=Guillardia theta GN=ycf46 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 49/170 (28.82%), Postives = 82/170 (48.24%), Query Frame = 1
Query:  211 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVD-AIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            P    +D+GG  E    ++          E++   G+  PKG+L  G  GTGK+L A+++AN  +   +++    L    +GE    VR++ Q A +   CI++ DE+D A  G+ F++  G    V  T +  ++     + +    V+   N  D+L P LLR GR D
Sbjct:  239 PVTKISDIGGLNELKSWLKFRAASFSKRAEEY---GLPIPKGLLLVGIQGTGKSLTAKSIANEWNLPLLKLDVGRLFGGIIGESEARVRQMIQFAETISPCILWIDEIDKAFTGSNFNNDSGTTKRVFGTFITWLS-----EKKSPVFVVATANNIDSLPPELLRKGRFD 400          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: YR476_MIMIV (Putative AAA family ATPase R476 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R476 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.035e-11
Identity = 54/204 (26.47%), Postives = 99/204 (48.53%), Query Frame = 1
Query:  160 LPPKIDPSVTMMTVEEKPDVTYNDV-------GGCKEQIEKMREVVELPM-LHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC----FIRVIGSELVQKYVGEGARMVRELFQMAR--------SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGR 711
            +P K + S  +    E+ +++ N V       GG  +++E +   + L   +  ++++  G+ P KG++ +GPPGTGKT L+R +  +   C    F  + G E+  K+VG     +R +F+ A+             +V  DE+DA+  +R   G  G+      + + + ++DG +       +  TNR + LDPA +R GR
Sbjct:  539 VPAKANKSYVINNSVEQTEISKNPVQELEKYVGGISKELETVVRTLCLSRGILKQEYLARGLRPVKGIILHGPPGTGKTSLSRNL-GKILGCEGDRFRLMSGPEIFNKWVGGSESNIRAIFKPAKDAWKKHGDKSPVYMVVIDEIDAMLPSR--SGSDGNPVRDSVVNQFLAEMDGLEVFNNLICIGITNRLELLDPATIRSGR 739          
The following BLAST results are available for this feature:
BLAST of FC875656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
KATL2_XENLA4.796e-1736.75Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
YCF2_MESVI5.303e-1629.19Protein ycf2 OS=Mesostigma viride GN=ycf2 PE=3 SV=... [more]
FTSHC_ARATH4.489e-1535.29Cell division protease ftsH homolog 12, chloroplas... [more]
FIGL2_HUMAN4.489e-1532.80Putative fidgetin-like protein 2 OS=Homo sapiens G... [more]
Y4KL_RHISN2.085e-1236.43Uncharacterized AAA family ATPase y4kL OS=Rhizobiu... [more]
YCF46_GUITH6.068e-1228.82Uncharacterized AAA domain-containing protein ycf4... [more]
YR476_MIMIV1.035e-1126.47Putative AAA family ATPase R476 OS=Acanthamoeba po... [more]

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Properties
Property NameValue
Genbank descriptionC31401D04EF CTVClemen1 Citrus clementina cDNA clone C31401D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875656 ID=FC875656; Name=FC875656; organism=Citrus clementina; type=EST; length=718bp
AAGATTATCAATCCAAATTCTGAAGATGCTAAATATGTAATAAATGTTAA
GCAAATTGCCAAGTTTGTCGTTGGGCTTGGTGACAAAGTTTCCCCTACTG
ATATTGAAGAAGGGATGCGTGTGGGGGTTGACCGGAATAAATATCAAATT
CAAATTCCCTTGCCTCCAAAAATTGATCCAAGTGTAACCATGATGACTGT
GGAAGAGAAACCAGATGTGACATATAATGATGTTGGTGGATGTAAGGAGC
AGATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAG
AAGTTCGTAAAGCTTGGAATTGATCCTCCTAAGGGTGTTCTATGCTATGG
TCCTCCAGGGACTGGTAAAACGCTTCTAGCCAGAGCTGTGGCTAATAGAA
CTGATGCTTGTTTCATTCGTGTCATTGGAAGTGAACTTGTTCAGAAGTAT
GTAGGTGAGGGAGCCCGGATGGTTCGTGAACTGTTTCAGATGGCACGTTC
GAAAAAGGCATGTATTGTATTTTTCGATGAAGTTGATGCCATAGGAGGTG
CACGTTTTGATGATGGCGTCGGTGGAGACAATGAGGTTCAACGTACAATG
CTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGAGGAAAACATCA
AGTTCTGATGGCTACAAACAGGCCTGACACACTTGATCCTGCGCTGCTAC
GTCCTGGACGGTTGGATC
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