FC875656
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: KATL2_XENLA (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus laevis GN=katnal2 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17 Identity = 43/117 (36.75%), Postives = 71/117 (60.68%), Query Frame = 1 Query: 205 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGAR 555 + P+V ++D+ G ++E V P+ +P+ F + + P KG+L YGPPGTGKTLLA+AVA + F + S +V K+ G+ ++VR LF++AR +F DE++++ R Sbjct: 251 QNPNVRWDDIIGLDAAKRLVKEAVVYPIRYPQLFTGI-LSPWKGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQR 366
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: YCF2_MESVI (Protein ycf2 OS=Mesostigma viride GN=ycf2 PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16 Identity = 54/185 (29.19%), Postives = 90/185 (48.65%), Query Frame = 1 Query: 217 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGAR------------FDDGVGGDN------EVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717 +T+ D+GG + +++ V L K P G L GPPGTGKTL+A+A++ + ++ V GS+ + G V +LF+ ++ CI++ DE+D+I R D + G N +++ + +DG+ R ++ ATNR +TLD A++RPGR D Sbjct: 346 ITFRDIGGMESLKQELATVAFLL-----KQKNYSNSYPMGYLFAGPPGTGKTLMAKAMSYEAETPYLYVEGSQFRCREEGVANARVDDLFKQIQNISPCILYIDEIDSIAERREEANKQLEQLKTIGDSIEGSNINIDQKPSDTVLMQFLIYMDGYKKRNDLIIIGATNRIETLDDAIMRPGRFD 525
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: FTSHC_ARATH (Cell division protease ftsH homolog 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12 PE=2 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15 Identity = 54/153 (35.29%), Postives = 74/153 (48.37%), Query Frame = 1 Query: 286 MLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG---------FDARGKHQVLMATNRPDTLDPALLRPGRLD 717 M +P ++ + + +GVL GPPGTGKTL AR +A + F+ G+E GA + E+F +AR VF DE+DAI G D + T ++ QLDG F R + ATNRPD LD +R GR+D Sbjct: 512 MGNPMQYYEKDVAFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDS-EKSGAAKINEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGEKEKTGIDRFSLRQAVIFICATNRPDELDLEFVRSGRID 659
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: FIGL2_HUMAN (Putative fidgetin-like protein 2 OS=Homo sapiens GN=FIGNL2 PE=5 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15 Identity = 61/186 (32.80%), Postives = 89/186 (47.85%), Query Frame = 1 Query: 163 PPKIDPS----VTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLM--ATNRPDTLDPALLR 702 P +DP VT V+ P V + DV G + E + P+L P + + PP+ VL +GP G GK LL R +A + A +R+ G+ L EGAR+++ F AR + ++ E++A+ AR DDG +Q +L LDG G VL+ T+RP LD A R Sbjct: 367 PKGVDPGALELVTSKMVDCGPPVQWADVAGQGALKAALEEELVWPLLRPPAYPG-SLRPPRTVLLFGPRGAGKALLGRCLATQLGATLLRLRGATLAAPGAAEGARLLQAAFAAARCRPPSVLLISELEALLPAR-DDGAAAGGALQVPLLAC---LDGGCGAGADGVLVVGTTSRPAALDEATRR 547
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: Y4KL_RHISN (Uncharacterized AAA family ATPase y4kL OS=Rhizobium sp. (strain NGR234) GN=NGR_a02840 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.085e-12 Identity = 47/129 (36.43%), Postives = 69/129 (53.49%), Query Frame = 1 Query: 316 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLR 702 G+ +L GPPG GKTL A A RV L+ Y+GE A +R+ F+ AR K+ C++FFDE DA+ AR D G NE++R + ++ +D +G ++ ATN +LD A+ R Sbjct: 114 GLKVRSKMLFCGPPGCGKTLCAEIFAAELGLPLFRVKLDRLISSYLGETATNIRKTFEFAR-KQPCVLFFDEFDAL--ARTRDDSGEHNELRRVVNSLLLFIDNMQPKG--FLIAATNLDRSLDAAIWR 237
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: YCF46_GUITH (Uncharacterized AAA domain-containing protein ycf46 OS=Guillardia theta GN=ycf46 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12 Identity = 49/170 (28.82%), Postives = 82/170 (48.24%), Query Frame = 1 Query: 211 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVD-AIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717 P +D+GG E ++ E++ G+ PKG+L G GTGK+L A+++AN + +++ L +GE VR++ Q A + CI++ DE+D A G+ F++ G V T + ++ + + V+ N D+L P LLR GR D Sbjct: 239 PVTKISDIGGLNELKSWLKFRAASFSKRAEEY---GLPIPKGLLLVGIQGTGKSLTAKSIANEWNLPLLKLDVGRLFGGIIGESEARVRQMIQFAETISPCILWIDEIDKAFTGSNFNNDSGTTKRVFGTFITWLS-----EKKSPVFVVATANNIDSLPPELLRKGRFD 400
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: YR476_MIMIV (Putative AAA family ATPase R476 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R476 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.035e-11 Identity = 54/204 (26.47%), Postives = 99/204 (48.53%), Query Frame = 1 Query: 160 LPPKIDPSVTMMTVEEKPDVTYNDV-------GGCKEQIEKMREVVELPM-LHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC----FIRVIGSELVQKYVGEGARMVRELFQMAR--------SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGR 711 +P K + S + E+ +++ N V GG +++E + + L + ++++ G+ P KG++ +GPPGTGKT L+R + + C F + G E+ K+VG +R +F+ A+ +V DE+DA+ +R G G+ + + + ++DG + + TNR + LDPA +R GR Sbjct: 539 VPAKANKSYVINNSVEQTEISKNPVQELEKYVGGISKELETVVRTLCLSRGILKQEYLARGLRPVKGIILHGPPGTGKTSLSRNL-GKILGCEGDRFRLMSGPEIFNKWVGGSESNIRAIFKPAKDAWKKHGDKSPVYMVVIDEIDAMLPSR--SGSDGNPVRDSVVNQFLAEMDGLEVFNNLICIGITNRLELLDPATIRSGR 739 The following BLAST results are available for this feature:
BLAST of FC875656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 377
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875656 ID=FC875656; Name=FC875656; organism=Citrus clementina; type=EST; length=718bpback to top |