FC875656
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1) HSP 1 Score: 253.447 bits (646), Expect = 8.620e-67 Identity = 122/238 (51.26%), Postives = 168/238 (70.59%), Query Frame = 1 Query: 4 IINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717 +I ED V N +FVV + + + G RV +D+ + LP DP+V V E+P+VTYND+GG K+Q++++RE +ELP+ HPE F ++GIDPPKGVL YGPPG GKTL+A+A+A+ +A FIRV+GSELV+KY+GEGAR+V ELF++A+ K I+F DE+DAIG R D+ GG+ EV RT+++++ ++DGFD RG +V+ ATNRPD LDPALLRPGR D Sbjct: 67 VIEVLDEDRAIVQNYNG-PRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFD 303
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1) HSP 1 Score: 253.447 bits (646), Expect = 8.620e-67 Identity = 116/231 (50.22%), Postives = 168/231 (72.73%), Query Frame = 1 Query: 25 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717 + K+++ ++VVG ++ + ++ G RV +D I LP ++DP V M+ E+ +V+Y+++GG EQI ++REV+ELP+ +PE F ++GI PPKG L YGPPGTGKTLLARAVA++ D F++V+ S +V KY+GE AR++RE+F AR + CI+F DE+DAIGG RF +G D E+QRT++E++NQ+DGFD + +++MATNRPDTLDPALLRPGRLD Sbjct: 66 EEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLD 296
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1) HSP 1 Score: 253.447 bits (646), Expect = 8.620e-67 Identity = 116/231 (50.22%), Postives = 168/231 (72.73%), Query Frame = 1 Query: 25 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717 + K+++ ++VVG ++ + ++ G RV +D I LP ++DP V M+ E+ +V+Y+++GG EQI ++REV+ELP+ +PE F ++GI PPKG L YGPPGTGKTLLARAVA++ D F++V+ S +V KY+GE AR++RE+F AR + CI+F DE+DAIGG RF +G D E+QRT++E++NQ+DGFD + +++MATNRPDTLDPALLRPGRLD Sbjct: 66 EEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLD 296
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1) HSP 1 Score: 253.447 bits (646), Expect = 8.620e-67 Identity = 116/231 (50.22%), Postives = 168/231 (72.73%), Query Frame = 1 Query: 25 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717 + K+++ ++VVG ++ + ++ G RV +D I LP ++DP V M+ E+ +V+Y+++GG EQI ++REV+ELP+ +PE F ++GI PPKG L YGPPGTGKTLLARAVA++ D F++V+ S +V KY+GE AR++RE+F AR + CI+F DE+DAIGG RF +G D E+QRT++E++NQ+DGFD + +++MATNRPDTLDPALLRPGRLD Sbjct: 66 EEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLD 296
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1) HSP 1 Score: 253.447 bits (646), Expect = 8.620e-67 Identity = 116/231 (50.22%), Postives = 168/231 (72.73%), Query Frame = 1 Query: 25 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717 + K+++ ++VVG ++ + ++ G RV +D I LP ++DP V M+ E+ +V+Y+++GG EQI ++REV+ELP+ +PE F ++GI PPKG L YGPPGTGKTLLARAVA++ D F++V+ S +V KY+GE AR++RE+F AR + CI+F DE+DAIGG RF +G D E+QRT++E++NQ+DGFD + +++MATNRPDTLDPALLRPGRLD Sbjct: 66 EEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLD 296
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS8_ENCCU (26S protease regulatory subunit 8 homolog OS=Encephalitozoon cuniculi GN=RPT6 PE=1 SV=1) HSP 1 Score: 252.677 bits (644), Expect = 1.470e-66 Identity = 126/219 (57.53%), Postives = 162/219 (73.97%), Query Frame = 1 Query: 61 KFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717 K++V + V+ +++ G+RV + + Y + LP K+DP V++M VE+ PD TY +GG EQI+++REV+ELP+ HPE F LGI PKGVL YGPPGTGKTLLARAVA+ T FIRV GSELVQKY+GEG+R+VRELF MAR I+F DE+D+IG R D G D+EVQRTMLE++NQLDGF++ +V+MATNR D LDPALLR GR+D Sbjct: 141 KYLVKVEPGVNYDELKAGVRVALRSDSYDVHRILPTKVDPLVSLMMVEKVPDSTYQMIGGLDEQIKEIREVIELPIKHPELFENLGIAQPKGVLLYGPPGTGKTLLARAVAHHTQCKFIRVSGSELVQKYIGEGSRLVRELFIMAREHAPSIIFMDEIDSIGSTRGDSNKGSDSEVQRTMLELLNQLDGFESHNNIKVIMATNRIDILDPALLRTGRID 359
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1) HSP 1 Score: 252.677 bits (644), Expect = 1.470e-66 Identity = 119/199 (59.80%), Postives = 155/199 (77.89%), Query Frame = 1 Query: 121 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717 VG+DR+ + LPP+ D S+++++ EKPDVTYND+GGC Q +++RE VELP+ H E + ++GIDPP+GVL YGPPGTGKT+LA+AVA+ T A FIRV+GSE VQKY+GEG RMVR++F++A+ I+F DEVDAI ARFD G D EVQR ++E++NQ+DGFD +V+MATNR DTLDPALLRPGRLD Sbjct: 125 VGLDRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLD 323
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1) HSP 1 Score: 249.595 bits (636), Expect = 1.245e-65 Identity = 118/231 (51.08%), Postives = 165/231 (71.43%), Query Frame = 1 Query: 25 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717 + K V+ F+V L V P DI G RV +++ I LP + D M +EEKPD+++ D+GG QI ++EVVELP+ +PE F K+GI PPKGVL YGPPGTGKTLLA+AVA T+A F+RV+GSELV+K++GEGA++VR++F++A+ K CI+F DE+DA+ R + GGD EVQRT+++++ ++DGFD+RG +++ ATNRPD LDPA+LRPGR D Sbjct: 81 ERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFD 311
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PSMR_METM7 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1) HSP 1 Score: 249.595 bits (636), Expect = 1.245e-65 Identity = 118/231 (51.08%), Postives = 165/231 (71.43%), Query Frame = 1 Query: 25 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717 + K V+ F+V L V P DI G RV +++ I LP + D M +EEKPD+++ D+GG QI ++EVVELP+ +PE F K+GI PPKGVL YGPPGTGKTLLA+AVA T+A F+RV+GSELV+K++GEGA++VR++F++A+ K CI+F DE+DA+ R + GGD EVQRT+++++ ++DGFD+RG +++ ATNRPD LDPA+LRPGR D Sbjct: 81 ERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFD 311
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PSMR_METM6 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1) HSP 1 Score: 249.595 bits (636), Expect = 1.245e-65 Identity = 118/231 (51.08%), Postives = 165/231 (71.43%), Query Frame = 1 Query: 25 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717 + K V+ F+V L V P DI G RV +++ I LP + D M +EEKPD+++ D+GG QI ++EVVELP+ +PE F K+GI PPKGVL YGPPGTGKTLLA+AVA T+A F+RV+GSELV+K++GEGA++VR++F++A+ K CI+F DE+DA+ R + GGD EVQRT+++++ ++DGFD+RG +++ ATNRPD LDPA+LRPGR D Sbjct: 81 ERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFD 311 The following BLAST results are available for this feature:
BLAST of FC875656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 377
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875656 ID=FC875656; Name=FC875656; organism=Citrus clementina; type=EST; length=718bpback to top |