FC875656

Overview
NameFC875656
Unique NameFC875656
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 4.004e-64
Identity = 119/232 (51.29%), Postives = 166/232 (71.55%), Query Frame = 1
Query:   22 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            +D   +++    ++  V +   V    +E G  V ++   + +   L    DP VT+M VE+ P  TY D+GG   QI++++E VELP+ HPE + ++GI PPKGV+ YGPPGTGKTLLA+AVAN+T A F+RV+GSEL+QKY+G+G ++VRELF++A      IVF DE+DAIG  R+D   GG+ E+QRTMLE++NQLDGFD+RG  +V+MATNR +TLDPAL+RPGR+D
Sbjct:  117 DDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRID 348          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 4.004e-64
Identity = 119/232 (51.29%), Postives = 166/232 (71.55%), Query Frame = 1
Query:   22 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            +D   +++    ++  V +   V    +E G  V ++   + +   L    DP VT+M VE+ P  TY D+GG   QI++++E VELP+ HPE + ++GI PPKGV+ YGPPGTGKTLLA+AVAN+T A F+RV+GSEL+QKY+G+G ++VRELF++A      IVF DE+DAIG  R+D   GG+ E+QRTMLE++NQLDGFD+RG  +V+MATNR +TLDPAL+RPGR+D
Sbjct:  117 DDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRID 348          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 8.921e-64
Identity = 116/232 (50.00%), Postives = 166/232 (71.55%), Query Frame = 1
Query:   22 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            +D   +++    ++  V +   V    +E G  V ++   + +   L    DP V++M +E+ P  TY DVGG  +QI++++E VELP+ HPE + ++GI PPKGV+ YG PGTGKTLLA+AVAN+T A F+R++GSEL+QKY+G+G +MVRELF++A      IVF DE+DA+G  R+D   GG+ E+QRTMLE++NQLDGFD+RG  +VLMATNR ++LDPAL+RPGR+D
Sbjct:  120 DDQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPKMVRELFRVAEENAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVLMATNRIESLDPALIRPGRID 351          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.165e-63
Identity = 119/217 (54.84%), Postives = 159/217 (73.27%), Query Frame = 1
Query:   67 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            VVGL   V P  ++ G  VGV+++ Y I   LP + D  V  M V+EKP   YND+GG ++QI+++ E + LPM H E+F KLG+ PPKGVL YGPPGTGKTL+ARA A +T+A F+++ G +LVQ ++G+GA++VR+ FQ+A+ K  CI+F DE+DAIG  RFD  V GD EVQRTMLE++NQLDGF +  + +V+ ATNR D LDPAL+R GRLD
Sbjct:  121 VVGL---VDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLD 334          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.165e-63
Identity = 119/217 (54.84%), Postives = 159/217 (73.27%), Query Frame = 1
Query:   67 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            VVGL   V P  ++ G  VGV+++ Y I   LP + D  V  M V+EKP   YND+GG ++QI+++ E + LPM H E+F KLG+ PPKGVL YGPPGTGKTL+ARA A +T+A F+++ G +LVQ ++G+GA++VR+ FQ+A+ K  CI+F DE+DAIG  RFD  V GD EVQRTMLE++NQLDGF +  + +V+ ATNR D LDPAL+R GRLD
Sbjct:  121 VVGL---VDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLD 334          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.165e-63
Identity = 118/232 (50.86%), Postives = 166/232 (71.55%), Query Frame = 1
Query:   22 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            +D   +++    ++  V +   V    +E G  V ++   + +   L    DP VT+M +E+ P  TY D+GG   QI++++E VELP+ HPE + ++GI PPKGV+ YGPPGTGKTLLA+AVAN+T A F+RV+GSEL+QKY+G+G ++VRELF++A      IVF DE+DAIG  R+D   GG+ E+QRTMLE++NQLDGFD+RG  +V+MATNR +TLDPAL+RPGR+D
Sbjct:  117 DDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKLEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHGPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRID 348          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.987e-63
Identity = 118/217 (54.38%), Postives = 160/217 (73.73%), Query Frame = 1
Query:   67 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            VVGL   V P +++ G  VGV+++ Y I   LP + D  V  M V+EKP   Y+D+GG ++QI+++ E + LPM H E+F KLG+ PPKGVL YGPPGTGKTL+ARA A +T+A F+++ G +LVQ ++G+GA++VR+ FQ+A+ K  CI+F DE+DAIG  RFD  V GD EVQRTMLE++NQLDGF +  + +V+ ATNR D LDPAL+R GRLD
Sbjct:  120 VVGL---VDPDNLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYHDIGGLEKQIQELVEAIVLPMTHQERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLD 333          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 2.596e-63
Identity = 118/217 (54.38%), Postives = 159/217 (73.27%), Query Frame = 1
Query:   67 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            V+GL   V P  ++ G  VGV+++ Y I   LP + D  V  M V+EKP   YND+GG ++QI+++ E + LPM H ++F KLGI PPKGVL YGPPGTGKTL+ARA A +T+A F+++ G +LVQ ++G+GA++VR+ FQ+A+ K  CI+F DE+DAIG  RFD  V GD EVQRTMLE++NQLDGF +  + +V+ ATNR D LDPAL+R GRLD
Sbjct:  126 VIGL---VDPEKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKDRFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLD 339          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 240.736 bits (613), Expect = 5.782e-63
Identity = 119/217 (54.84%), Postives = 158/217 (72.81%), Query Frame = 1
Query:   67 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            VVGL   V P  ++ G  VGV+++ Y I   LP + D  V  M V+EKP   YND+GG ++QI+++ E + LPM H E+F KLGI PPKGVL YGPPGTGKTL+ARA A +T+A F+++ G +LVQ ++G+GA++VR+ F +A+ K  CI+F DE+DAIG  RFD  V GD EVQRTMLE++NQLDGF +  + +V+ ATNR D LDPAL+R GRLD
Sbjct:  120 VVGL---VDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLD 333          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.863e-63
Identity = 110/202 (54.46%), Postives = 149/202 (73.76%), Query Frame = 1
Query:  112 GMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            G RV +D     I   LP ++DP +  MT E    V+Y ++GG   QI ++REVVELP++ PE F+++GI  PKGVL YGPPGTGKTLLARA+A+  +A F++V+ S +V KY+GE AR++RE+F  AR  + C++F DE+DAIGG RF +G   D E+QRT++E++NQ+DGFD   K +++MATNRPD LDPALLRPGRLD
Sbjct:   99 GARVTLDLTTLTILKILPREVDPIIFNMTAESPGSVSYGEIGGLSNQIRELREVVELPLMIPELFIRVGIKAPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYARDHQPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLSKVKIIMATNRPDVLDPALLRPGRLD 300          
The following BLAST results are available for this feature:
BLAST of FC875656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
PRS4_MOUSE4.004e-6451.2926S protease regulatory subunit 4 OS=Mus musculus ... [more]
PRS4_HUMAN4.004e-6451.2926S protease regulatory subunit 4 OS=Homo sapiens ... [more]
PRS4_CAEEL8.921e-6450.00Probable 26S protease regulatory subunit 4 OS=Caen... [more]
PS6AA_ARATH1.165e-6354.8426S protease regulatory subunit 6A homolog A OS=Ar... [more]
PRS6A_BRACM1.165e-6354.8426S protease regulatory subunit 6A homolog OS=Bras... [more]
PRS4_CHICK1.165e-6350.8626S protease regulatory subunit 4 OS=Gallus gallus... [more]
PRS6A_SOLLC1.987e-6354.3826S protease regulatory subunit 6A homolog OS=Sola... [more]
PRS6A_ORYSJ2.596e-6354.3826S protease regulatory subunit 6A homolog OS=Oryz... [more]
PS6AB_ARATH5.782e-6354.8426S protease regulatory subunit 6A homolog B OS=Ar... [more]
PRS10_DICDI9.863e-6354.4626S protease regulatory subunit S10B OS=Dictyostel... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31401D04EF CTVClemen1 Citrus clementina cDNA clone C31401D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875656 ID=FC875656; Name=FC875656; organism=Citrus clementina; type=EST; length=718bp
AAGATTATCAATCCAAATTCTGAAGATGCTAAATATGTAATAAATGTTAA
GCAAATTGCCAAGTTTGTCGTTGGGCTTGGTGACAAAGTTTCCCCTACTG
ATATTGAAGAAGGGATGCGTGTGGGGGTTGACCGGAATAAATATCAAATT
CAAATTCCCTTGCCTCCAAAAATTGATCCAAGTGTAACCATGATGACTGT
GGAAGAGAAACCAGATGTGACATATAATGATGTTGGTGGATGTAAGGAGC
AGATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAG
AAGTTCGTAAAGCTTGGAATTGATCCTCCTAAGGGTGTTCTATGCTATGG
TCCTCCAGGGACTGGTAAAACGCTTCTAGCCAGAGCTGTGGCTAATAGAA
CTGATGCTTGTTTCATTCGTGTCATTGGAAGTGAACTTGTTCAGAAGTAT
GTAGGTGAGGGAGCCCGGATGGTTCGTGAACTGTTTCAGATGGCACGTTC
GAAAAAGGCATGTATTGTATTTTTCGATGAAGTTGATGCCATAGGAGGTG
CACGTTTTGATGATGGCGTCGGTGGAGACAATGAGGTTCAACGTACAATG
CTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGAGGAAAACATCA
AGTTCTGATGGCTACAAACAGGCCTGACACACTTGATCCTGCGCTGCTAC
GTCCTGGACGGTTGGATC
back to top