FC875656
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1) HSP 1 Score: 244.588 bits (623), Expect = 4.004e-64 Identity = 119/232 (51.29%), Postives = 166/232 (71.55%), Query Frame = 1 Query: 22 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717 +D +++ ++ V + V +E G V ++ + + L DP VT+M VE+ P TY D+GG QI++++E VELP+ HPE + ++GI PPKGV+ YGPPGTGKTLLA+AVAN+T A F+RV+GSEL+QKY+G+G ++VRELF++A IVF DE+DAIG R+D GG+ E+QRTMLE++NQLDGFD+RG +V+MATNR +TLDPAL+RPGR+D Sbjct: 117 DDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRID 348
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1) HSP 1 Score: 244.588 bits (623), Expect = 4.004e-64 Identity = 119/232 (51.29%), Postives = 166/232 (71.55%), Query Frame = 1 Query: 22 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717 +D +++ ++ V + V +E G V ++ + + L DP VT+M VE+ P TY D+GG QI++++E VELP+ HPE + ++GI PPKGV+ YGPPGTGKTLLA+AVAN+T A F+RV+GSEL+QKY+G+G ++VRELF++A IVF DE+DAIG R+D GG+ E+QRTMLE++NQLDGFD+RG +V+MATNR +TLDPAL+RPGR+D Sbjct: 117 DDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRID 348
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1) HSP 1 Score: 243.432 bits (620), Expect = 8.921e-64 Identity = 116/232 (50.00%), Postives = 166/232 (71.55%), Query Frame = 1 Query: 22 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717 +D +++ ++ V + V +E G V ++ + + L DP V++M +E+ P TY DVGG +QI++++E VELP+ HPE + ++GI PPKGV+ YG PGTGKTLLA+AVAN+T A F+R++GSEL+QKY+G+G +MVRELF++A IVF DE+DA+G R+D GG+ E+QRTMLE++NQLDGFD+RG +VLMATNR ++LDPAL+RPGR+D Sbjct: 120 DDQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPKMVRELFRVAEENAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVLMATNRIESLDPALIRPGRID 351
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1) HSP 1 Score: 243.047 bits (619), Expect = 1.165e-63 Identity = 119/217 (54.84%), Postives = 159/217 (73.27%), Query Frame = 1 Query: 67 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717 VVGL V P ++ G VGV+++ Y I LP + D V M V+EKP YND+GG ++QI+++ E + LPM H E+F KLG+ PPKGVL YGPPGTGKTL+ARA A +T+A F+++ G +LVQ ++G+GA++VR+ FQ+A+ K CI+F DE+DAIG RFD V GD EVQRTMLE++NQLDGF + + +V+ ATNR D LDPAL+R GRLD Sbjct: 121 VVGL---VDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLD 334
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1) HSP 1 Score: 243.047 bits (619), Expect = 1.165e-63 Identity = 119/217 (54.84%), Postives = 159/217 (73.27%), Query Frame = 1 Query: 67 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717 VVGL V P ++ G VGV+++ Y I LP + D V M V+EKP YND+GG ++QI+++ E + LPM H E+F KLG+ PPKGVL YGPPGTGKTL+ARA A +T+A F+++ G +LVQ ++G+GA++VR+ FQ+A+ K CI+F DE+DAIG RFD V GD EVQRTMLE++NQLDGF + + +V+ ATNR D LDPAL+R GRLD Sbjct: 121 VVGL---VDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLD 334
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1) HSP 1 Score: 243.047 bits (619), Expect = 1.165e-63 Identity = 118/232 (50.86%), Postives = 166/232 (71.55%), Query Frame = 1 Query: 22 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717 +D +++ ++ V + V +E G V ++ + + L DP VT+M +E+ P TY D+GG QI++++E VELP+ HPE + ++GI PPKGV+ YGPPGTGKTLLA+AVAN+T A F+RV+GSEL+QKY+G+G ++VRELF++A IVF DE+DAIG R+D GG+ E+QRTMLE++NQLDGFD+RG +V+MATNR +TLDPAL+RPGR+D Sbjct: 117 DDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKLEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHGPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRID 348
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1) HSP 1 Score: 242.276 bits (617), Expect = 1.987e-63 Identity = 118/217 (54.38%), Postives = 160/217 (73.73%), Query Frame = 1 Query: 67 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717 VVGL V P +++ G VGV+++ Y I LP + D V M V+EKP Y+D+GG ++QI+++ E + LPM H E+F KLG+ PPKGVL YGPPGTGKTL+ARA A +T+A F+++ G +LVQ ++G+GA++VR+ FQ+A+ K CI+F DE+DAIG RFD V GD EVQRTMLE++NQLDGF + + +V+ ATNR D LDPAL+R GRLD Sbjct: 120 VVGL---VDPDNLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYHDIGGLEKQIQELVEAIVLPMTHQERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLD 333
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2) HSP 1 Score: 241.891 bits (616), Expect = 2.596e-63 Identity = 118/217 (54.38%), Postives = 159/217 (73.27%), Query Frame = 1 Query: 67 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717 V+GL V P ++ G VGV+++ Y I LP + D V M V+EKP YND+GG ++QI+++ E + LPM H ++F KLGI PPKGVL YGPPGTGKTL+ARA A +T+A F+++ G +LVQ ++G+GA++VR+ FQ+A+ K CI+F DE+DAIG RFD V GD EVQRTMLE++NQLDGF + + +V+ ATNR D LDPAL+R GRLD Sbjct: 126 VIGL---VDPEKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKDRFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLD 339
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3) HSP 1 Score: 240.736 bits (613), Expect = 5.782e-63 Identity = 119/217 (54.84%), Postives = 158/217 (72.81%), Query Frame = 1 Query: 67 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717 VVGL V P ++ G VGV+++ Y I LP + D V M V+EKP YND+GG ++QI+++ E + LPM H E+F KLGI PPKGVL YGPPGTGKTL+ARA A +T+A F+++ G +LVQ ++G+GA++VR+ F +A+ K CI+F DE+DAIG RFD V GD EVQRTMLE++NQLDGF + + +V+ ATNR D LDPAL+R GRLD Sbjct: 120 VVGL---VDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLD 333
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1) HSP 1 Score: 239.965 bits (611), Expect = 9.863e-63 Identity = 110/202 (54.46%), Postives = 149/202 (73.76%), Query Frame = 1 Query: 112 GMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717 G RV +D I LP ++DP + MT E V+Y ++GG QI ++REVVELP++ PE F+++GI PKGVL YGPPGTGKTLLARA+A+ +A F++V+ S +V KY+GE AR++RE+F AR + C++F DE+DAIGG RF +G D E+QRT++E++NQ+DGFD K +++MATNRPD LDPALLRPGRLD Sbjct: 99 GARVTLDLTTLTILKILPREVDPIIFNMTAESPGSVSYGEIGGLSNQIRELREVVELPLMIPELFIRVGIKAPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYARDHQPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLSKVKIIMATNRPDVLDPALLRPGRLD 300 The following BLAST results are available for this feature:
BLAST of FC875656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 377
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875656 ID=FC875656; Name=FC875656; organism=Citrus clementina; type=EST; length=718bpback to top |