FC875656

Overview
NameFC875656
Unique NameFC875656
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.173e-61
Identity = 111/186 (59.68%), Postives = 143/186 (76.88%), Query Frame = 1
Query:  160 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            LPP+ D S+ M+T ++KPDV Y D+GG   Q +++RE VELP+ H E + ++GIDPP+GVL YGPPG GKT+LA+AVA+ T A FIRV+GSE VQKY+GEG RMVR++F++A+     I+F DE+DAI   RFD   G D EVQR +LE++NQ+DGFD     +V+MATNR DTLDPALLRPGRLD
Sbjct:  143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLD 328          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 4.144e-61
Identity = 108/219 (49.32%), Postives = 160/219 (73.06%), Query Frame = 1
Query:   61 KFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            +F+V +   +    +  G +V ++++   I   +P   +P V  M V E  +V Y+ +GG  EQI++++E VELP++ PE+F ++GI+PPKGVL YG PGTGKTLLA+AVA+RT+A FIRV+GSELVQKY+G+G+++VRE+F+MAR K   I+F DE+D+I   R ++  G D EVQRT+++++ ++DGFD R   +++ ATNRPD LDPA+LRPGR D
Sbjct:  104 QFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESIEVDYDQIGGLDEQIQELQEAVELPLIEPERFARIGIEPPKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVREIFEMARKKAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFD 322          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.412e-61
Identity = 111/186 (59.68%), Postives = 142/186 (76.34%), Query Frame = 1
Query:  160 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            LPP  D S+ M+T ++KPDV Y D+GG   Q +++RE VELP+ H E + ++GIDPP+GVL YGPPG GKT+LA+AVA+ T A FIRV+GSE VQKY+GEG RMVR++F++A+     I+F DE+DAI   RFD   G D EVQR +LE++NQ+DGFD     +V+MATNR DTLDPALLRPGRLD
Sbjct:  143 LPPAADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLD 328          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.232e-61
Identity = 108/219 (49.32%), Postives = 159/219 (72.60%), Query Frame = 1
Query:   61 KFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            +F+V +   +    +  G +V ++++   I   +P   +P V  M V E  +V Y+ +GG  EQI++++E VELP+  PE+F ++GI+PPKGVL YG PGTGKTLLA+AVA+RT+A FIRV+GSELVQKY+G+G+++VRE+F+MAR K   I+F DE+D+I   R ++  G D EVQRT+++++ ++DGFD R   +++ ATNRPD LDPA+LRPGR D
Sbjct:  104 QFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESVEVDYDQIGGLDEQIQELQEAVELPLTSPERFARIGIEPPKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVREIFEMARKKAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFD 322          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.232e-61
Identity = 115/232 (49.57%), Postives = 159/232 (68.53%), Query Frame = 1
Query:   22 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            +  + V+      +F+V +   V+PT ++ G+R  +++    I   LP   D  V  M + + P  TY D+GG ++QI ++RE VELPM  P+ F K+GI+PPKGVL YGPPGTGKTLLA+AVA+ T A F+  +GSELVQKY+GEGAR+VRELF +A+ K   IVF DE+DAIG +R +    GD EVQRT+++++  +DGF+ RG  +++ ATNR D LD ALLRPGR D
Sbjct:   85 DSGRVVVRSSAGPRFLVRVSQAVNPTTLKAGVRCTLNQQSLAIVEVLPSTYDSQVYGMELVDAPTETYEDIGGLEKQIMEIREAVELPMTRPDLFEKIGINPPKGVLLYGPPGTGKTLLAKAVAHETHAIFLHTVGSELVQKYIGEGARLVRELFDLAKEKAPSIVFIDEIDAIGASRTEAMTSGDREVQRTLMQLLAAMDGFEPRGDVKIIGATNRIDILDAALLRPGRFD 316          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 233.417 bits (594), Expect = 9.232e-61
Identity = 111/232 (47.84%), Postives = 162/232 (69.83%), Query Frame = 1
Query:   22 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            +D   ++    +  + V +   V    +E G  V +      I   L    DP V++M +++ P  +Y+D+GG + QI++++E VELP+ HPE + ++GI PPKGV+ YG PGTGKTLLA+AVAN+T A F+R++GSEL+QKY+G+G R+ R++F++A      IVF DE+DAIG  R+D   GG+ E+QRTMLE++NQLDGFD RG  +V+MATN+ +TLDPAL+RPGR+D
Sbjct:  114 DDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRID 345          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.206e-60
Identity = 110/199 (55.28%), Postives = 147/199 (73.87%), Query Frame = 1
Query:  121 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            V + R+   +   LPP+ D S+ ++  +EKP  +Y+D+GG   Q ++MRE VELP+ H   + ++GIDPP+GVL YGPPGTGKT+LA+AVA+ T A FIRV+GSE VQKY+GEG R+VR++F++AR     I+F DE+DAI   RFD   G D EVQR ++E++NQ+DGFD     +V+MATNR DTLDPALLRPGRLD
Sbjct:  115 VALQRHSNALVDTLPPESDSSIHLLGADEKPSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTSAAFIRVVGSEFVQKYLGEGPRLVRDVFRLARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILMELLNQMDGFDVSVNVKVIMATNRQDTLDPALLRPGRLD 313          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.575e-60
Identity = 112/232 (48.28%), Postives = 162/232 (69.83%), Query Frame = 1
Query:   22 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            ++ + ++      +F+VG+   ++  +I+ G R  +++    I   LP   D  +  M V E P   Y ++GG ++QI ++RE VELP+  PE F K+GI+PPKGVL +GPPGTGKTLLARAVA++T+A F+RV+GSELVQKY+GEGAR+VRELF++A+ K   I+F DE+DAIG +R +    GD EV RT+++++ ++DGF  RG  +++ ATNR D LD ALLRPGR D
Sbjct:   85 DENRVIVRSSAGPRFLVGISQSLNIEEIKPGARCTLNQQSLAIVEILPTNYDAQIYGMEVIEAPSERYEEIGGLEKQINEIREAVELPLKKPEVFRKMGIEPPKGVLLHGPPGTGKTLLARAVAHQTEAHFLRVVGSELVQKYIGEGARLVRELFELAKKKSPSIIFIDEIDAIGASRTESNTSGDREVHRTLMQLLAEMDGFSNRGDVRIIGATNRIDILDRALLRPGRFD 316          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.575e-60
Identity = 114/220 (51.82%), Postives = 155/220 (70.45%), Query Frame = 1
Query:   58 AKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            + +VV +   +    ++    V + R+   +   LPP+ D S++M+  +E+PDV+Y DVGG   Q +++RE VELP+   + + ++GIDPP+GVL YGPPGTGKT+L +AVAN T A FIRV+GSE VQKY+GEG RMVR++F+MAR     I+F DE+DAI   RFD   G D EVQR ++E++ Q+DGFD     +V+MATNR DTLDPALLRPGRLD
Sbjct:   78 SNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIATKRFDAQTGADREVQRILIELLTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLD 297          
BLAST of FC875656 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.057e-60
Identity = 118/232 (50.86%), Postives = 156/232 (67.24%), Query Frame = 1
Query:   22 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGKHQVLMATNRPDTLDPALLRPGRLD 717
            +D + V+        +V +   V    ++ G  V ++     I   LP + DP V  M VEE+P V + DVGG +EQI ++ E V LP+ +P  F +LGIDPPKGVL +GPPGTGKTLLA+AVA  T+A FIRV+GSELV K++GEGAR+VRE+F++AR K   I+F DE+DAI   R D G  GD EVQRTML+++ +LDGFD     +V+ ATNR D +DPA+LRPGR D
Sbjct:   71 DDNRVVVKSSTGPNLIVNVAAGVDARSLKPGAIVALNNRGSTIVDVLPGRYDPLVKAMEVEERPKVFFKDVGGLEEQIREIYEAVVLPIKNPHLFRELGIDPPKGVLLHGPPGTGKTLLAKAVAGETEATFIRVVGSELVNKFIGEGARLVREIFRLAREKAPSILFIDEIDAIASKRVDIGTSGDREVQRTMLQLLAELDGFDPLDNVKVIAATNRLDLIDPAVLRPGRFD 302          
The following BLAST results are available for this feature:
BLAST of FC875656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
PRS6B_BOVIN3.173e-6159.6826S protease regulatory subunit 6B OS=Bos taurus G... [more]
PSMR_METAC4.144e-6149.32Proteasome-activating nucleotidase OS=Methanosarci... [more]
PRS6B_MOUSE5.412e-6159.6826S protease regulatory subunit 6B OS=Mus musculus... [more]
PSMR_METMA9.232e-6149.32Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_METHJ9.232e-6149.57Proteasome-activating nucleotidase OS=Methanospiri... [more]
PRS4_YEAST9.232e-6147.8426S protease regulatory subunit 4 homolog OS=Sacch... [more]
PRS6B_DICDI1.206e-6055.2826S protease regulatory subunit 6B homolog OS=Dict... [more]
PSMR_METPE1.575e-6048.28Proteasome-activating nucleotidase OS=Methanosphae... [more]
PRS6B_SCHPO1.575e-6051.8226S protease regulatory subunit 6B homolog OS=Schi... [more]
PSMR_AERPE2.057e-6050.86Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]

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Properties
Property NameValue
Genbank descriptionC31401D04EF CTVClemen1 Citrus clementina cDNA clone C31401D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875656 ID=FC875656; Name=FC875656; organism=Citrus clementina; type=EST; length=718bp
AAGATTATCAATCCAAATTCTGAAGATGCTAAATATGTAATAAATGTTAA
GCAAATTGCCAAGTTTGTCGTTGGGCTTGGTGACAAAGTTTCCCCTACTG
ATATTGAAGAAGGGATGCGTGTGGGGGTTGACCGGAATAAATATCAAATT
CAAATTCCCTTGCCTCCAAAAATTGATCCAAGTGTAACCATGATGACTGT
GGAAGAGAAACCAGATGTGACATATAATGATGTTGGTGGATGTAAGGAGC
AGATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAG
AAGTTCGTAAAGCTTGGAATTGATCCTCCTAAGGGTGTTCTATGCTATGG
TCCTCCAGGGACTGGTAAAACGCTTCTAGCCAGAGCTGTGGCTAATAGAA
CTGATGCTTGTTTCATTCGTGTCATTGGAAGTGAACTTGTTCAGAAGTAT
GTAGGTGAGGGAGCCCGGATGGTTCGTGAACTGTTTCAGATGGCACGTTC
GAAAAAGGCATGTATTGTATTTTTCGATGAAGTTGATGCCATAGGAGGTG
CACGTTTTGATGATGGCGTCGGTGGAGACAATGAGGTTCAACGTACAATG
CTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGAGGAAAACATCA
AGTTCTGATGGCTACAAACAGGCCTGACACACTTGATCCTGCGCTGCTAC
GTCCTGGACGGTTGGATC
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