FC875676

Overview
NameFC875676
Unique NameFC875676
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length769
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 5.216e-28
Identity = 64/174 (36.78%), Postives = 102/174 (58.62%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSNKQK 647
            +K++ +GD  VGKT ++ RF    F   T+ +T+GIDF +K + ++   V+LQ+WDTAGQERFRS+  +Y R             + SF N   W+ E++     DV+++L+GNK D  ++R V  E+GE  ++E  + F+ETSAK+G N+   F  IA  L    T + ++ +
Sbjct:   65 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQERVVKREDGEKLAKEYGLPFMETSAKSGLNVDLAFTAIAKELKQRSTKAPSEPR 238          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.813e-28
Identity = 63/160 (39.38%), Postives = 95/160 (59.38%), Query Frame = 3
Query:  132 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 611
            KL+ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  +T+  + + ++LQ+WDTAGQERFR++  +Y R              +SF N   W   V      D  I LVGNK D    RQVS E+G+  + +LNV F+E SAK+  N+  +F ++A+ +
Sbjct:   16 KLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCDDEVNRQVSKEQGQELAAKLNVPFLEASAKSNENVDSIFYELASII 175          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.813e-28
Identity = 61/160 (38.12%), Postives = 95/160 (59.38%), Query Frame = 3
Query:  132 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 611
            KL+ +GD  VGK+ ++ RF  D+F  ++  TIGIDF  +T+ + ++ V+LQ+WDTAGQERFR++  +Y R              +SF N   W   V++     V ++LVGNK DL EKR VS E+G+A + +  + F+E S+K   N++  F  +A  +
Sbjct:   13 KLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRI 172          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 6.813e-28
Identity = 66/161 (40.99%), Postives = 94/161 (58.39%), Query Frame = 3
Query:  132 KLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 611
            K++ LGD  VGKT  + +F    F   T+ AT+GIDF +K + ++   V+LQ+WDTAGQERFRS+  +Y R             + SF N   W+ E+      DV+I+L+GNK D+  +R +  E+GE  +RE  V F+ETSAK G N++  F  IA  L
Sbjct:   31 KVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKEL 191          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.813e-28
Identity = 66/192 (34.38%), Postives = 108/192 (56.25%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPG-------------METLSSNKQKNG*RES 665
            +K++ +GD  VGK+ ++ RF  D + +T+ +TIG+DF  KT+ L+ +T++LQ+WDTAGQERFR++  SY R             + SF N  +W+ E+      +V  +LVGNKTDLV ++ V   + ++ +    + FIETSAK   N++  F  +A  +               ++  S NK K+G ++S
Sbjct:   11 FKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNRLADIQETPKPDEVDIKSKNKTKSGGKKS 202          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.813e-28
Identity = 57/157 (36.31%), Postives = 98/157 (62.42%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 599
            +K+V +GD +VGK++++TR+  ++F+   +ATIG++F +++M ++ + V+ Q+WDTAGQERFR++  +Y R               +F N  +W+DE+ T   + V  +L+GNK DL   R VS+EEG++ +    + F+ETSA    N+K  F  +
Sbjct:   13 FKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMV 169          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.897e-28
Identity = 63/201 (31.34%), Postives = 117/201 (58.21%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSNKQKNG*RESEVYTGMHHSPVSVSGCSVMHPG 731
            +K+V +GD +VGK+ I+ RF  ++F    ++TIG++F ++T+ ++ +TV+ Q+WDTAGQER+R++  +Y R             RQ+F +  +W++E+R     +++I+L+GNK DLV +R V  E+ +  + +  + F+ETSA    N++  F  +   +  +     NK+     ES+     + +  S+SG  ++ PG
Sbjct:   18 FKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNI----VNKKSLAADESQ----GNGNSASLSGQKIIIPG 210          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.897e-28
Identity = 56/154 (36.36%), Postives = 97/154 (62.99%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLF 590
            +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE FRS+  SY R             R +F + + W+++ R    S+++I+L+GNK+DL  +R+V  EEGEA +RE  ++F+ETSAK   N++  F
Sbjct:    7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 160          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.897e-28
Identity = 56/154 (36.36%), Postives = 97/154 (62.99%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLF 590
            +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE FRS+  SY R             R +F + + W+++ R    S+++I+L+GNK+DL  +R+V  EEGEA +RE  ++F+ETSAK   N++  F
Sbjct:    7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 160          
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.897e-28
Identity = 56/154 (36.36%), Postives = 97/154 (62.99%), Query Frame = 3
Query:  129 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLF 590
            +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE FRS+  SY R             R +F + + W+++ R    S+++I+L+GNK+DL  +R+V  EEGEA +RE  ++F+ETSAK   N++  F
Sbjct:    7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 160          
The following BLAST results are available for this feature:
BLAST of FC875676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB26_RAT5.216e-2836.78Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]
SEC4_CANAL6.813e-2839.38Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
RYL1_YARLI6.813e-2838.13Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RAB37_HUMAN6.813e-2840.99Ras-related protein Rab-37 OS=Homo sapiens GN=RAB3... [more]
RAB1D_DICDI6.813e-2834.38Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
ARA4_ARATH6.813e-2836.31Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
RB11A_LOTJA8.897e-2831.34Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RAB2A_RABIT8.897e-2836.36Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB8.897e-2836.36Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE8.897e-2836.36Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]

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Properties
Property NameValue
Genbank descriptionC31401F01EF CTVClemen1 Citrus clementina cDNA clone C31401F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875676 ID=FC875676; Name=FC875676; organism=Citrus clementina; type=EST; length=769bp
AACACTGAACAGAGTCTTGGCTTTACTAAAATTGCTTCAGCTTATTAAAC
AAATCAACTCACCGTCTCTTACTGATCTTTCCCAGTTTGTTGACTCTGAA
AATGGCGCCGGTGTCGGCTCTCGCAAAGTACAAGCTGGTGTTTTTAGGAG
ATCAATCTGTGGGCAAAACAAGTATCATCACTCGCTTCATGTATGATAAA
TTCGATAACACCTATCAGGCTACAATTGGTATTGATTTCCTTTCAAAAAC
TATGTACCTTGAAGATCGAACTGTTCGTCTGCAGCTGTGGGATACAGCTG
GACAGGAAAGATTTAGAAGTCTCATTCCAAGCTACATCAGGGATTCTTCT
GTTGCTGTTGTTGTATATGATGTTGCAAGCCGGCAATCTTTCTTGAACAC
TTCAAAATGGATTGATGAGGTTCGAACCGAGAGGGGTAGTGATGTCATCA
TTGTCCTTGTTGGGAACAAAACTGACCTTGTGGAAAAAAGGCAAGTCTCC
ATAGAGGAAGGAGAAGCCAAATCTCGGGAACTCAACGTCATGTTCATTGA
AACGAGTGCTAAAGCTGGTTTTAATATAAAGCCTTTGTTTCGGAAAATTG
CTGCAGCATTGCCAGGGATGGAAACACTTTCTTCAAACAAGCAGAAGAAT
GGTTGACGTGAATCTGAGGTCTACACTGGCATGCATCACAGTCCAGTCTC
AGTCAGTGGATGCTCTGTGATGCATCCTGGACGCTGGTGCTATGTCCTCC
AGCTATTAGTCTTCGACTT
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