FC875676

Overview
NameFC875676
Unique NameFC875676
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length769
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAP1A_MOUSE (Ras-related protein Rap-1A OS=Mus musculus GN=Rap1a PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.629e-13
Identity = 50/178 (28.09%), Postives = 91/178 (51.12%), Query Frame = 3 
Query:  120 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSNKQK 647
            + +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTAG E+F ++   Y++             + +F +     +++ R +   DV ++LVGNK DL ++R V  E+G+  +R+  N  F+E+SAK+  N+  +F  +   +     +   K K
Sbjct:    1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPK 177
[Close]
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAP1A_HUMAN (Ras-related protein Rap-1A OS=Homo sapiens GN=RAP1A PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.629e-13
Identity = 50/178 (28.09%), Postives = 91/178 (51.12%), Query Frame = 3 
Query:  120 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSNKQK 647
            + +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTAG E+F ++   Y++             + +F +     +++ R +   DV ++LVGNK DL ++R V  E+G+  +R+  N  F+E+SAK+  N+  +F  +   +     +   K K
Sbjct:    1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPK 177
[Close]
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAP1A_BOVIN (Ras-related protein Rap-1A OS=Bos taurus GN=RAP1A PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.629e-13
Identity = 50/178 (28.09%), Postives = 91/178 (51.12%), Query Frame = 3 
Query:  120 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSNKQK 647
            + +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTAG E+F ++   Y++             + +F +     +++ R +   DV ++LVGNK DL ++R V  E+G+  +R+  N  F+E+SAK+  N+  +F  +   +     +   K K
Sbjct:    1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPK 177
[Close]
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAN_XENTR (GTP-binding nuclear protein Ran OS=Xenopus tropicalis GN=ran PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.629e-13
Identity = 50/169 (29.59%), Postives = 83/169 (49.11%), Query Frame = 3 
Query:  126 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKW-IDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIKPLFRKIAAALPG 617
            ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQE+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ +++       +AKS    R+ N+ + + SAK+ +N +  F  +A  L G
Sbjct:   10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170
[Close]
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAN_XENLA (GTP-binding nuclear protein Ran OS=Xenopus laevis GN=ran PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.629e-13
Identity = 50/169 (29.59%), Postives = 83/169 (49.11%), Query Frame = 3 
Query:  126 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKW-IDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIKPLFRKIAAALPG 617
            ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQE+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ +++       +AKS    R+ N+ + + SAK+ +N +  F  +A  L G
Sbjct:   10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170
[Close]
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAN_RAT (GTP-binding nuclear protein Ran OS=Rattus norvegicus GN=Ran PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.629e-13
Identity = 50/169 (29.59%), Postives = 83/169 (49.11%), Query Frame = 3 
Query:  126 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKW-IDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIKPLFRKIAAALPG 617
            ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQE+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ +++       +AKS    R+ N+ + + SAK+ +N +  F  +A  L G
Sbjct:   10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170
[Close]
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAN_PONAB (GTP-binding nuclear protein Ran OS=Pongo abelii GN=RAN PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.629e-13
Identity = 50/169 (29.59%), Postives = 83/169 (49.11%), Query Frame = 3 
Query:  126 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKW-IDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIKPLFRKIAAALPG 617
            ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQE+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ +++       +AKS    R+ N+ + + SAK+ +N +  F  +A  L G
Sbjct:   10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170
[Close]
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAN_MOUSE (GTP-binding nuclear protein Ran OS=Mus musculus GN=Ran PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.629e-13
Identity = 50/169 (29.59%), Postives = 83/169 (49.11%), Query Frame = 3 
Query:  126 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKW-IDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIKPLFRKIAAALPG 617
            ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQE+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ +++       +AKS    R+ N+ + + SAK+ +N +  F  +A  L G
Sbjct:   10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170
[Close]
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAN_MACFA (GTP-binding nuclear protein Ran OS=Macaca fascicularis GN=RAN PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.629e-13
Identity = 50/169 (29.59%), Postives = 83/169 (49.11%), Query Frame = 3 
Query:  126 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKW-IDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIKPLFRKIAAALPG 617
            ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQE+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ +++       +AKS    R+ N+ + + SAK+ +N +  F  +A  L G
Sbjct:   10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170
[Close]
BLAST of FC875676 vs. ExPASy Swiss-Prot
Match: RAN_HUMAN (GTP-binding nuclear protein Ran OS=Homo sapiens GN=RAN PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.629e-13
Identity = 50/169 (29.59%), Postives = 83/169 (49.11%), Query Frame = 3 
Query:  126 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKW-IDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIKPLFRKIAAALPG 617
            ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQE+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ +++       +AKS    R+ N+ + + SAK+ +N +  F  +A  L G
Sbjct:   10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170
The following BLAST results are available for this feature:
BLAST of FC875676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAP1A_MOUSE1.629e-1328.09Ras-related protein Rap-1A OS=Mus musculus GN=Rap1... [more]
RAP1A_HUMAN1.629e-1328.09Ras-related protein Rap-1A OS=Homo sapiens GN=RAP1... [more]
RAP1A_BOVIN1.629e-1328.09Ras-related protein Rap-1A OS=Bos taurus GN=RAP1A ... [more]
RAN_XENTR1.629e-1329.59GTP-binding nuclear protein Ran OS=Xenopus tropica... [more]
RAN_XENLA1.629e-1329.59GTP-binding nuclear protein Ran OS=Xenopus laevis ... [more]
RAN_RAT1.629e-1329.59GTP-binding nuclear protein Ran OS=Rattus norvegic... [more]
RAN_PONAB1.629e-1329.59GTP-binding nuclear protein Ran OS=Pongo abelii GN... [more]
RAN_MOUSE1.629e-1329.59GTP-binding nuclear protein Ran OS=Mus musculus GN... [more]
RAN_MACFA1.629e-1329.59GTP-binding nuclear protein Ran OS=Macaca fascicul... [more]
RAN_HUMAN1.629e-1329.59GTP-binding nuclear protein Ran OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionC31401F01EF CTVClemen1 Citrus clementina cDNA clone C31401F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875676 ID=FC875676; Name=FC875676; organism=Citrus clementina; type=EST; length=769bp
AACACTGAACAGAGTCTTGGCTTTACTAAAATTGCTTCAGCTTATTAAAC
AAATCAACTCACCGTCTCTTACTGATCTTTCCCAGTTTGTTGACTCTGAA
AATGGCGCCGGTGTCGGCTCTCGCAAAGTACAAGCTGGTGTTTTTAGGAG
ATCAATCTGTGGGCAAAACAAGTATCATCACTCGCTTCATGTATGATAAA
TTCGATAACACCTATCAGGCTACAATTGGTATTGATTTCCTTTCAAAAAC
TATGTACCTTGAAGATCGAACTGTTCGTCTGCAGCTGTGGGATACAGCTG
GACAGGAAAGATTTAGAAGTCTCATTCCAAGCTACATCAGGGATTCTTCT
GTTGCTGTTGTTGTATATGATGTTGCAAGCCGGCAATCTTTCTTGAACAC
TTCAAAATGGATTGATGAGGTTCGAACCGAGAGGGGTAGTGATGTCATCA
TTGTCCTTGTTGGGAACAAAACTGACCTTGTGGAAAAAAGGCAAGTCTCC
ATAGAGGAAGGAGAAGCCAAATCTCGGGAACTCAACGTCATGTTCATTGA
AACGAGTGCTAAAGCTGGTTTTAATATAAAGCCTTTGTTTCGGAAAATTG
CTGCAGCATTGCCAGGGATGGAAACACTTTCTTCAAACAAGCAGAAGAAT
GGTTGACGTGAATCTGAGGTCTACACTGGCATGCATCACAGTCCAGTCTC
AGTCAGTGGATGCTCTGTGATGCATCCTGGACGCTGGTGCTATGTCCTCC
AGCTATTAGTCTTCGACTT
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