FC875703

Overview
NameFC875703
Unique NameFC875703
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875703 vs. ExPASy Swiss-Prot
Match: XTH21_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 21 OS=Arabidopsis thaliana GN=XTH21 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.206e-52
Identity = 100/196 (51.02%), Postives = 134/196 (68.37%), Query Frame = 3
Query:  102 SSMVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFN--HVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWA 683
            S+++ MS+  SLF+GL ++ +V    F+     +W     ++  +G  L L LD  SG+GF SK++YL+GKV +QIKLV G+SAGTVT FY+ S G   +E DFEFLGN +G+PY+V TNVY  G G+REQ+  LWFDPT  FH YS+LWN   +VF +D  PIR   NLE  G+ +PK+Q M +Y S+WNADDWA
Sbjct:    4 STLLVMSI--SLFLGLSILLVVHGKDFNQDIDITWGDGRGNILNNGTLLNLGLDQSSGSGFQSKAEYLYGKVDMQIKLVPGNSAGTVTTFYLKSQGLTWDEIDFEFLGNVSGDPYIVHTNVYTQGKGDREQQFYLWFDPTAAFHNYSILWNPSHIVFYIDGKPIREFKNLEVLGVAYPKNQPMRMYGSLWNADDWA 197          
BLAST of FC875703 vs. ExPASy Swiss-Prot
Match: XTH13_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 13 OS=Arabidopsis thaliana GN=XTH13 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.174e-52
Identity = 94/185 (50.81%), Postives = 127/185 (68.65%), Query Frame = 3
Query:  135 LFVGLLMVGLVSSAKFDDLYQTSWAFN--HVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWA 683
            L + LL++  +S+  F D +  +W     ++   G  L   LD  SG+GF SK +YLFGK+ +++KLV G+SAGTVTA+Y+SS G   +E DFEFLGN TG+PY++ TNV+  G GNRE +  LWFDPT +FHTY++LWN   ++FLVD  PIRV  N E  G+ +PK Q M +YSS+W ADDWA
Sbjct:   11 LLLSLLLLISLSAGSFYDNFDITWGNGRANIVESGQLLTCTLDKISGSGFQSKKEYLFGKIDMKMKLVAGNSAGTVTAYYLSSKGETWDEIDFEFLGNVTGQPYVLHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQPMKIYSSLWEADDWA 195          
BLAST of FC875703 vs. ExPASy Swiss-Prot
Match: XTH12_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 12 OS=Arabidopsis thaliana GN=XTH12 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.369e-52
Identity = 95/185 (51.35%), Postives = 124/185 (67.03%), Query Frame = 3
Query:  135 LFVGLLMVGLVSSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWA 683
            L   LL++  V++  F D +  +W          G  L   LD  SG+GF SK +YLFGK+ ++IKLV G+SAGTVTA+Y+SS G   +E DFEFLGN TG+PY++ TNV+  G GNRE +  LWFDPT +FHTY++LWN   ++FLVD  PIRV  N E  G+ +PK Q M +YSS+W ADDWA
Sbjct:   12 LLASLLILIGVATGSFYDSFDITWGAGRANIFESGQLLTCTLDKTSGSGFQSKKEYLFGKIDMKIKLVPGNSAGTVTAYYLSSKGETWDEIDFEFLGNVTGQPYVIHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQPMKIYSSLWEADDWA 196          
BLAST of FC875703 vs. ExPASy Swiss-Prot
Match: XTH24_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 3.560e-51
Identity = 95/185 (51.35%), Postives = 129/185 (69.73%), Query Frame = 3
Query:  138 FVGLLMVGL-VSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWA 683
            F  LL+    VS+A F+     +W      +  +G  L L+LD  SG+GF SK++YLFGK+ +QIKLV G+SAGTVT FY+ S+G   +E DFEFLGN +G+PY + TNVY  G G++EQ+  LWFDPT  FHTYS+LWN ++++  VD+TPIR   N E  G+ FPK++ M +Y+S+WNADDWA
Sbjct:    9 FTTLLVAAFSVSAADFNTDVNVAWGNGRGKILNNGQLLTLSLDKSSGSGFQSKTEYLFGKIDMQIKLVPGNSAGTVTTFYLKSEGSTWDEIDFEFLGNMSGDPYTLHTNVYTQGKGDKEQQFHLWFDPTANFHTYSILWNPQRIILTVDDTPIREFKNYESLGVLFPKNKPMRMYASLWNADDWA 193          
BLAST of FC875703 vs. ExPASy Swiss-Prot
Match: XTH14_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 14 OS=Arabidopsis thaliana GN=XTH14 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.145e-49
Identity = 93/193 (48.19%), Postives = 125/193 (64.77%), Query Frame = 3
Query:  114 KMSLIFSLFVGL-LMVGLVSSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWA 683
            K  L+ SL + +   V   S+  F + +  +W         +G  L   LD  SG+GF SK +YLFGK+ +++KLV G+SAGTVTA+Y+SS G   +E DFEFLGN TG PY + TNV+  G G+RE +  LWFDPT +FHTY++ WN   ++FLVD  PIRV  N E  G+ +PK+Q M +YSS+W ADDWA
Sbjct:    7 KQPLLLSLLLAIGFFVVAASAGNFYESFDITWGNGRANIFENGQLLTCTLDKVSGSGFQSKKEYLFGKIDMKLKLVAGNSAGTVTAYYLSSKGTAWDEIDFEFLGNRTGHPYTIHTNVFTGGKGDREMQFRLWFDPTADFHTYTVHWNPVNIIFLVDGIPIRVFKNNEKNGVAYPKNQPMRIYSSLWEADDWA 199          
BLAST of FC875703 vs. ExPASy Swiss-Prot
Match: XTH26_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.072e-47
Identity = 91/189 (48.15%), Postives = 123/189 (65.08%), Query Frame = 3
Query:  120 SLIFSLFVGLLMVGLVS-SAKFDDLYQTSWAFNHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWA 683
            +L+F L   L  +G     A F   +  +W  +H+  +G  L+L LD  +G+   SK  +LFG V + IKLV G+SAGTV A+Y+SS G  H+E DFEFLGN TG+PY + TN+Y  G GNREQ+   WF+PT  FH Y++ WN  +VV+ VD TPIRV  N E +GI +P  Q M V++S+WNA+DWA
Sbjct:    8 TLMFVLAAALATLGRTFVEADFSKNFIVTWGKDHMFMNGTNLRLVLDKSAGSAIKSKVAHLFGSVEMLIKLVPGNSAGTVAAYYLSSTGSTHDEIDFEFLGNATGQPYTIHTNLYAQGKGNREQQFRPWFNPTNGFHNYTIHWNPSEVVWFVDGTPIRVFRNYESEGIAYPNKQGMKVFASLWNAEDWA 196          
BLAST of FC875703 vs. ExPASy Swiss-Prot
Match: XTH20_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 20 OS=Arabidopsis thaliana GN=XTH20 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.948e-47
Identity = 81/151 (53.64%), Postives = 110/151 (72.85%), Query Frame = 3
Query:  231 GDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWA 683
            G+ L L+LD +SG+GF S  ++L+GKV +Q+KLV G+SAGTVT FY+ S G   +E DFEFLGN +G PY + TNVY  G G++EQ+  LWFDPT +FHTY ++WN ++V+F +D  PIR   N E  G+PFPK Q M +Y+S+W A+ WA
Sbjct:   49 GNLLSLSLDKFSGSGFQSHQEFLYGKVEVQMKLVPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVDFHTYCIIWNPQRVIFTIDGIPIREFKNSEALGVPFPKHQPMRLYASLWEAEHWA 199          
BLAST of FC875703 vs. ExPASy Swiss-Prot
Match: XTH19_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 19 OS=Arabidopsis thaliana GN=XTH19 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.980e-45
Identity = 79/151 (52.32%), Postives = 105/151 (69.54%), Query Frame = 3
Query:  231 GDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWA 683
            G  L L+LD  SG+GF S  ++L+GK  +Q+KLV G+SAGTVT FY+ S G   +E DFEFLGN +G PY + TNVY  G G++EQ+  LWFDPT  FHTY + WN ++++F VD  PIR   N E +G+PFP  Q M +Y+S+W A+ WA
Sbjct:   44 GKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNISGHPYTLHTNVYTKGSGDKEQQFHLWFDPTANFHTYCITWNPQRIIFTVDGIPIREFMNAESRGVPFPTKQPMRLYASLWEAEHWA 194          
BLAST of FC875703 vs. ExPASy Swiss-Prot
Match: XTH18_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 18 OS=Arabidopsis thaliana GN=XTH18 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.504e-45
Identity = 80/152 (52.63%), Postives = 105/152 (69.08%), Query Frame = 3
Query:  228 DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWA 683
            DG  L L+LD  SG+GF S  ++L+GK  +Q+KLV G+SAGTVT FY+ S G   +E DFEFLGN +G PY + TNVY  G G++EQ+  LWFDPT  FHTY + WN ++++F VD  PIR   N E  G+PFP  Q M +Y+S+W A+ WA
Sbjct:   48 DGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNLSGHPYTLHTNVYTKGSGDKEQQFHLWFDPTVNFHTYCITWNPQRIIFTVDGIPIREFKNSESIGVPFPTKQPMRLYASLWEAEHWA 199          
BLAST of FC875703 vs. ExPASy Swiss-Prot
Match: XTH17_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 17 OS=Arabidopsis thaliana GN=XTH17 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.494e-45
Identity = 80/152 (52.63%), Postives = 105/152 (69.08%), Query Frame = 3
Query:  228 DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWA 683
            DG  L L+LD  SG+GF S  ++L+GK  +Q+KLV G+SAGTVT FY+ S G   +E DFEFLGN +G PY + TNVY  G G++EQ+  LWFDPT  FHTY + WN ++++F VD  PIR   N E  G+PFP  Q M +Y+S+W A+ WA
Sbjct:   48 DGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVNFHTYCITWNPQRIIFTVDGIPIREFKNPEAIGVPFPTRQPMRLYASLWEAEHWA 199          
The following BLAST results are available for this feature:
BLAST of FC875703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
XTH21_ARATH4.206e-5251.02Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH13_ARATH7.174e-5250.81Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH12_ARATH9.369e-5251.35Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH24_ARATH3.560e-5151.35Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH14_ARATH1.145e-4948.19Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH26_ARATH1.072e-4748.15Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH20_ARATH6.948e-4753.64Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH19_ARATH4.980e-4552.32Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH18_ARATH6.504e-4552.63Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH17_ARATH8.494e-4552.63Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionC31401H05EF CTVClemen1 Citrus clementina cDNA clone C31401H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875703 ID=FC875703; Name=FC875703; organism=Citrus clementina; type=EST; length=684bp
GACAGATCAGCATTTCAAAGTAGAAGCTTCAACTTCCCTCCACTTCACTG
GGCCTGCTCTGCTCATTCGCTTACTTCCTCTCCCCGTTCTTCTGTCTTCA
TTCTTCAATGGTTAAAATGTCTTTGATTTTCAGTCTGTTTGTGGGTCTTT
TAATGGTAGGTTTGGTCAGCTCAGCTAAGTTTGATGACCTTTATCAAACA
AGCTGGGCATTTAATCATGTTCAGTATGATGGGGACACTCTCAAGCTTAA
CCTCGATAATTATTCCGGAGCTGGGTTTGCGTCAAAGAGCAAGTATTTGT
TTGGGAAAGTCTCCATCCAAATTAAACTTGTAGGGGGTGACTCTGCTGGA
ACTGTCACTGCCTTCTATATGTCATCAGACGGTCCAAATCACAACGAGTT
CGATTTTGAGTTCCTGGGGAACACTACAGGAGAGCCATACTTAGTCCAAA
CCAATGTTTATGTGAATGGTGTGGGCAACAGAGAGCAGAGACTTGACCTC
TGGTTCGACCCAACAAAGGAATTTCATACCTATTCCCTCCTTTGGAACCA
GCGCCAAGTTGTATTTTTGGTGGATGAGACCCCAATTAGAGTGCACACTA
ACTTGGAGCACAAAGGAATTCCCTTCCCAAAGGACCAAGCCATGGGTGTG
TACAGTTCAATATGGAATGCTGATGACTGGGCCA
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