FC875704

Overview
NameFC875704
Unique NameFC875704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPIN (Chaperone protein dnaJ OS=Leptospira interrogans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 3
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            + YY IL V   A +EEI+S Y +LA+K+HPDK K    +  +F+E  EAY++L DP KR+ YD  G
Sbjct:    4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFG 70          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPIC (Chaperone protein dnaJ OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 3
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            + YY IL V   A +EEI+S Y +LA+K+HPDK K    +  +F+E  EAY++L DP KR+ YD  G
Sbjct:    4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFG 70          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPBL (Chaperone protein dnaJ OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 3
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            + YY IL V   A +EEI+S Y +LA+K+HPDK K    +  +F+E  EAY++L DP KR+ YD  G
Sbjct:    4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFG 70          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPBJ (Chaperone protein dnaJ OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 3
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            + YY IL V   A +EEI+S Y +LA+K+HPDK K    +  +F+E  EAY++L DP KR+ YD  G
Sbjct:    4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFG 70          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_LACSS (Chaperone protein dnaJ OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 33/71 (46.48%), Postives = 49/71 (69.01%), Query Frame = 3
Query:  165 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            +A+ +DYY +L V  DA+++EI+  Y +L+ K+HPD  K  D A ++F+E+ EAY+ LSDP KR  YD  G
Sbjct:    1 MAEKRDYYDVLGVGRDASDDEIKKAYRKLSKKYHPDINKAPD-AEAKFKEVTEAYEALSDPQKRAAYDQYG 70          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_LACSK (Chaperone protein dnaJ OS=Lactobacillus sakei GN=dnaJ PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 33/71 (46.48%), Postives = 49/71 (69.01%), Query Frame = 3
Query:  165 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            +A+ +DYY +L V  DA+++EI+  Y +L+ K+HPD  K  D A ++F+E+ EAY+ LSDP KR  YD  G
Sbjct:    1 MAEKRDYYDVLGVGRDASDDEIKKAYRKLSKKYHPDINKAPD-AEAKFKEVTEAYEALSDPQKRAAYDQYG 70          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_GLUDA (Chaperone protein dnaJ OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 3
Query:  165 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            +A   DYY +LEV  DA  +E++  Y RLA+++HPD+      A +RF+EINEAY +L D  KR  YD  G
Sbjct:    1 MATKLDYYAVLEVTRDANGDELKKAYRRLAMQYHPDRNPGDASAEARFKEINEAYDILKDEQKRAAYDRFG 71          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOSW (Chaperone protein dnaJ OS=Geobacillus sp. (strain WCH70) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 3
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            +DYY+IL V  +AT+EEI+  Y +L+ K+HPD  K+ D A  +F+EI EAY+VLSD  KR  YD  G
Sbjct:    4 RDYYEILGVSKNATKEEIKKAYRKLSKKYHPDINKEPD-AAEKFKEIKEAYEVLSDDQKRAHYDQFG 69          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_CUPTR (Chaperone protein dnaJ OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 30/67 (44.78%), Postives = 47/67 (70.15%), Query Frame = 3
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            +DYY++L V  +A+++EI+  Y +LA+K+HPD+  D   A  +F+E  EAY++LSDP K+  YD  G
Sbjct:    4 RDYYEVLGVGKNASDDEIKKAYRKLAMKFHPDRNPDSKDAEEKFKEAKEAYEMLSDPEKKAAYDQYG 70          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_BACTR (Chaperone protein dnaJ OS=Bacillus thermoglucosidasius GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 3
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            +DYY+IL V  +AT+EEI+  Y +L+ K+HPD  K+ D A  +F+EI EAY+VLSD  KR  YD  G
Sbjct:    4 RDYYEILGVSKNATKEEIKKAYRKLSKKYHPDINKEPD-AAEKFKEIKEAYEVLSDDQKRAHYDQFG 69          
The following BLAST results are available for this feature:
BLAST of FC875704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
DNAJ_LEPIN1.674e-1147.76Chaperone protein dnaJ OS=Leptospira interrogans G... [more]
DNAJ_LEPIC1.674e-1147.76Chaperone protein dnaJ OS=Leptospira interrogans s... [more]
DNAJ_LEPBL1.674e-1147.76Chaperone protein dnaJ OS=Leptospira borgpeterseni... [more]
DNAJ_LEPBJ1.674e-1147.76Chaperone protein dnaJ OS=Leptospira borgpeterseni... [more]
DNAJ_LACSS1.674e-1146.48Chaperone protein dnaJ OS=Lactobacillus sakei subs... [more]
DNAJ_LACSK1.674e-1146.48Chaperone protein dnaJ OS=Lactobacillus sakei GN=d... [more]
DNAJ_GLUDA1.674e-1146.48Chaperone protein dnaJ OS=Gluconacetobacter diazot... [more]
DNAJ_GEOSW1.674e-1152.24Chaperone protein dnaJ OS=Geobacillus sp. (strain ... [more]
DNAJ_CUPTR1.674e-1144.78Chaperone protein dnaJ OS=Cupriavidus taiwanensis ... [more]
DNAJ_BACTR1.674e-1152.24Chaperone protein dnaJ OS=Bacillus thermoglucosida... [more]

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Properties
Property NameValue
Genbank descriptionC31401H06EF CTVClemen1 Citrus clementina cDNA clone C31401H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875704 ID=FC875704; Name=FC875704; organism=Citrus clementina; type=EST; length=696bp
GAAGCGCTTAAGCCTTTGTAACTAGTTTTGAGCTCTATTGTCTGTCTCGT
GTTTGTGTCCCCTCTACTACAGAGGTCATGATGTGGGACGAATGGGTCGA
TTGCAACAATAACGATGAACAAACACAACAGGATTCCCATATCAATTTTG
ATTTTCTTTCTCTTCTCGCCAAACCCAAGGATTATTATAAAATATTGGAA
GTTGATTACGATGCCACGGAGGAAGAAATTAGGTCCAATTACATTCGTCT
AGCGCTGAAATGGCACCCAGATAAGCAAAAGGATCGAGATTGTGCAACTT
CGAGATTTCAAGAGATAAACGAGGCTTACCAGGTTTTGAGCGATCCTGTC
AAAAGGAGAGAATATGACAGCAAAGGGATGTTGCACATATATGATCGCAA
CATAATTGAGTATCTTAATCGCTACAAGGGCTTAATATTAACTTGCAATG
GTCTTGGGATGAGGCATTCAATTGTGTAATATGTTGTCAGCACAGTTGGG
GCAGTTCATATTGGGAGGCATAGAATTACCAATGCTGCAAATAGCATTGA
GGGCATGGAGAATAGCAGTTAATATGTATTGCGATAACTTGAATGCCCTT
GTATAATAGAAACCAATGCTAAAACATCGTTGTGTAACAGCTAATGCCTG
CCAATTTGGGGTTACATTGTCCAAAAAAAAAAAAAAAAAAAAAAAA
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