FC875704

Overview
NameFC875704
Unique NameFC875704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_ECOHS (Chaperone protein dnaJ OS=Escherichia coli O9:H4 (strain HS) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 3 
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            +DYY+IL V   A E EI+  Y RLA+K+HPD+ +    A ++F+EI EAY+VL+D  KR  YD  G
Sbjct:    4 QDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYG 70
[Close]
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_ECO8A (Chaperone protein dnaJ OS=Escherichia coli O8 (strain IAI1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 3 
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            +DYY+IL V   A E EI+  Y RLA+K+HPD+ +    A ++F+EI EAY+VL+D  KR  YD  G
Sbjct:    4 QDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYG 70
[Close]
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_ECO81 (Chaperone protein dnaJ OS=Escherichia coli O81 (strain ED1a) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 3 
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            +DYY+IL V   A E EI+  Y RLA+K+HPD+ +    A ++F+EI EAY+VL+D  KR  YD  G
Sbjct:    4 QDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYG 70
[Close]
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_ECO7I (Chaperone protein dnaJ OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 3 
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            +DYY+IL V   A E EI+  Y RLA+K+HPD+ +    A ++F+EI EAY+VL+D  KR  YD  G
Sbjct:    4 QDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYG 70
[Close]
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_ECO5E (Chaperone protein dnaJ OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 3 
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            +DYY+IL V   A E EI+  Y RLA+K+HPD+ +    A ++F+EI EAY+VL+D  KR  YD  G
Sbjct:    4 QDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAETKFKEIKEAYEVLTDSQKRAAYDQYG 70
[Close]
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_ECO57 (Chaperone protein dnaJ OS=Escherichia coli O157:H7 GN=dnaJ PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 3 
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            +DYY+IL V   A E EI+  Y RLA+K+HPD+ +    A ++F+EI EAY+VL+D  KR  YD  G
Sbjct:    4 QDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYG 70
[Close]
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_ECO55 (Chaperone protein dnaJ OS=Escherichia coli (strain 55989 / EAEC) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 3 
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            +DYY+IL V   A E EI+  Y RLA+K+HPD+ +    A ++F+EI EAY+VL+D  KR  YD  G
Sbjct:    4 QDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYG 70
[Close]
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_ECO45 (Chaperone protein dnaJ OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 3 
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            +DYY+IL V   A E EI+  Y RLA+K+HPD+ +    A ++F+EI EAY+VL+D  KR  YD  G
Sbjct:    4 QDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYG 70
[Close]
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_ECO27 (Chaperone protein dnaJ OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 3 
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            +DYY+IL V   A E EI+  Y RLA+K+HPD+ +    A ++F+EI EAY+VL+D  KR  YD  G
Sbjct:    4 QDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYG 70
[Close]
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_ECO24 (Chaperone protein dnaJ OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 3 
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            +DYY+IL V   A E EI+  Y RLA+K+HPD+ +    A ++F+EI EAY+VL+D  KR  YD  G
Sbjct:    4 QDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYG 70
The following BLAST results are available for this feature:
BLAST of FC875704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
DNAJ_ECOHS4.869e-1149.25Chaperone protein dnaJ OS=Escherichia coli O9:H4 (... [more]
DNAJ_ECO8A4.869e-1149.25Chaperone protein dnaJ OS=Escherichia coli O8 (str... [more]
DNAJ_ECO814.869e-1149.25Chaperone protein dnaJ OS=Escherichia coli O81 (st... [more]
DNAJ_ECO7I4.869e-1149.25Chaperone protein dnaJ OS=Escherichia coli O7:K1 (... [more]
DNAJ_ECO5E4.869e-1149.25Chaperone protein dnaJ OS=Escherichia coli O157:H7... [more]
DNAJ_ECO574.869e-1149.25Chaperone protein dnaJ OS=Escherichia coli O157:H7... [more]
DNAJ_ECO554.869e-1149.25Chaperone protein dnaJ OS=Escherichia coli (strain... [more]
DNAJ_ECO454.869e-1149.25Chaperone protein dnaJ OS=Escherichia coli O45:K1 ... [more]
DNAJ_ECO274.869e-1149.25Chaperone protein dnaJ OS=Escherichia coli O127:H6... [more]
DNAJ_ECO244.869e-1149.25Chaperone protein dnaJ OS=Escherichia coli O139:H2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31401H06EF CTVClemen1 Citrus clementina cDNA clone C31401H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875704 ID=FC875704; Name=FC875704; organism=Citrus clementina; type=EST; length=696bp
GAAGCGCTTAAGCCTTTGTAACTAGTTTTGAGCTCTATTGTCTGTCTCGT
GTTTGTGTCCCCTCTACTACAGAGGTCATGATGTGGGACGAATGGGTCGA
TTGCAACAATAACGATGAACAAACACAACAGGATTCCCATATCAATTTTG
ATTTTCTTTCTCTTCTCGCCAAACCCAAGGATTATTATAAAATATTGGAA
GTTGATTACGATGCCACGGAGGAAGAAATTAGGTCCAATTACATTCGTCT
AGCGCTGAAATGGCACCCAGATAAGCAAAAGGATCGAGATTGTGCAACTT
CGAGATTTCAAGAGATAAACGAGGCTTACCAGGTTTTGAGCGATCCTGTC
AAAAGGAGAGAATATGACAGCAAAGGGATGTTGCACATATATGATCGCAA
CATAATTGAGTATCTTAATCGCTACAAGGGCTTAATATTAACTTGCAATG
GTCTTGGGATGAGGCATTCAATTGTGTAATATGTTGTCAGCACAGTTGGG
GCAGTTCATATTGGGAGGCATAGAATTACCAATGCTGCAAATAGCATTGA
GGGCATGGAGAATAGCAGTTAATATGTATTGCGATAACTTGAATGCCCTT
GTATAATAGAAACCAATGCTAAAACATCGTTGTGTAACAGCTAATGCCTG
CCAATTTGGGGTTACATTGTCCAAAAAAAAAAAAAAAAAAAAAAAA
back to top