FC875704

Overview
NameFC875704
Unique NameFC875704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_ACTP2 (Chaperone protein dnaJ OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = 3
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            KDYY++L +   A+E +I+  Y RLA K HPDK +    A  +F+EINEAY+VL D  KR  YD  G
Sbjct:    4 KDYYEVLGLQKGASENDIKRAYKRLASKHHPDKNQGSKDAEEKFKEINEAYEVLGDAEKRAAYDQYG 70          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNJB9_RAT (DnaJ homolog subfamily B member 9 OS=Rattus norvegicus GN=Dnajb9 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 3
Query:  162 LLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            L+   K+YY IL V   A+E +I+  + +LA+K+HPDK K  D A ++F+EI EAY+ LSD  +R+EYD  G
Sbjct:   20 LILASKNYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPD-AEAKFREIAEAYETLSDANRRKEYDIIG 90          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNJB9_MOUSE (DnaJ homolog subfamily B member 9 OS=Mus musculus GN=Dnajb9 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 3
Query:  162 LLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            L+   K YY IL V   A+E +I+  + +LA+K+HPDK K  D A ++F+EI EAY+ LSD   R+EYD+ G
Sbjct:   20 LILASKSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPD-AEAKFREIAEAYETLSDANSRKEYDTIG 90          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNJB8_MOUSE (DnaJ homolog subfamily B member 8 OS=Mus musculus GN=Dnajb8 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 31/67 (46.27%), Postives = 47/67 (70.15%), Query Frame = 3
Query:  180 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD-RDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            +YY++L V   A+ E+I+  Y +LAL+WHPDK  D ++ A  +F++++EAY+VLSD  KR  YD  G
Sbjct:    3 NYYEVLGVQSSASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKQVSEAYEVLSDSKKRSVYDRAG 69          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNJ6B_XENLA (DnaJ homolog subfamily B member 6-B OS=Xenopus laevis GN=dnajb6-B PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 3
Query:  180 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD-RDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            +YY +L V  +++ ++I+  Y RLALKWHPDK  D ++ A  RF+E+ EAY+VLSD  KR  YD  G
Sbjct:    3 EYYDVLGVQRNSSPDDIKKAYRRLALKWHPDKNPDNKEEAERRFKEVAEAYEVLSDSKKRDIYDKYG 69          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_PSYWF (Chaperone protein dnaJ OS=Psychrobacter sp. (strain PRwf-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 3
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            +D+Y++L VD  A E EI+  Y +LA+K+HPD+  D   A  +F+E + AY+VLSD  KR  YD  G
Sbjct:    4 RDFYEVLGVDRSADEREIKKAYRKLAMKYHPDRNSDDPDAEEKFKEASMAYEVLSDKEKRSAYDRMG 70          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_MANSM (Chaperone protein dnaJ OS=Mannheimia succiniciproducens (strain MBEL55E) GN=dnaJ PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 3
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            +DYY+ L V   A E+EI+  Y RLA+K+HPD+      A  +F+E+NEAY++L D  KR  YD  G
Sbjct:    4 QDYYETLGVQKGADEKEIKRAYKRLAMKYHPDRTNGDKAAEEKFKEVNEAYEILMDKEKRAAYDQYG 70          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_ERYRH (Chaperone protein dnaJ OS=Erysipelothrix rhusiopathiae GN=dnaJ PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 3
Query:  165 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            +A  +D+Y+IL V   AT+ EI+  Y +LA K+HPD  K+ D A ++F+E+ EAY+VLSD  KR  YD  G
Sbjct:    1 MADKRDFYEILGVSKSATDAEIKKAYRQLAKKYHPDINKE-DGAEAKFKEVQEAYEVLSDSQKRANYDQFG 70          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOPH (Chaperone protein dnaJ OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 29/71 (40.85%), Postives = 48/71 (67.61%), Query Frame = 3
Query:  165 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            +A  +DYY++L +   A+++EI+  Y +LA ++HPD       A ++F+E +EAY VLSDP K+R++D  G
Sbjct:    1 MADKRDYYEVLGISKSASDDEIKKAYRKLAKQYHPDANPGDQTAEAKFKEASEAYAVLSDPEKKRQFDQFG 71          
BLAST of FC875704 vs. ExPASy Swiss-Prot
Match: DNAJ_BURS3 (Chaperone protein dnaJ OS=Burkholderia sp. (strain 383) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 30/67 (44.78%), Postives = 45/67 (67.16%), Query Frame = 3
Query:  177 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 377
            +DYY++L V  +A ++EI+  Y +LA+K+HPD+  D   A   F+E+ EAY++LSD  KR  YD  G
Sbjct:    4 RDYYEVLGVAKNAGDDEIKKAYRKLAMKYHPDRNPDNKDAEEHFKEVKEAYEMLSDGQKRAAYDQYG 70          
The following BLAST results are available for this feature:
BLAST of FC875704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
DNAJ_ACTP26.359e-1149.25Chaperone protein dnaJ OS=Actinobacillus pleuropne... [more]
DNJB9_RAT8.306e-1147.22DnaJ homolog subfamily B member 9 OS=Rattus norveg... [more]
DNJB9_MOUSE8.306e-1147.22DnaJ homolog subfamily B member 9 OS=Mus musculus ... [more]
DNJB8_MOUSE8.306e-1146.27DnaJ homolog subfamily B member 8 OS=Mus musculus ... [more]
DNJ6B_XENLA8.306e-1149.25DnaJ homolog subfamily B member 6-B OS=Xenopus lae... [more]
DNAJ_PSYWF8.306e-1146.27Chaperone protein dnaJ OS=Psychrobacter sp. (strai... [more]
DNAJ_MANSM8.306e-1146.27Chaperone protein dnaJ OS=Mannheimia succiniciprod... [more]
DNAJ_ERYRH8.306e-1147.89Chaperone protein dnaJ OS=Erysipelothrix rhusiopat... [more]
DNAJ_CLOPH8.306e-1140.85Chaperone protein dnaJ OS=Clostridium phytoferment... [more]
DNAJ_BURS38.306e-1144.78Chaperone protein dnaJ OS=Burkholderia sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionC31401H06EF CTVClemen1 Citrus clementina cDNA clone C31401H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875704 ID=FC875704; Name=FC875704; organism=Citrus clementina; type=EST; length=696bp
GAAGCGCTTAAGCCTTTGTAACTAGTTTTGAGCTCTATTGTCTGTCTCGT
GTTTGTGTCCCCTCTACTACAGAGGTCATGATGTGGGACGAATGGGTCGA
TTGCAACAATAACGATGAACAAACACAACAGGATTCCCATATCAATTTTG
ATTTTCTTTCTCTTCTCGCCAAACCCAAGGATTATTATAAAATATTGGAA
GTTGATTACGATGCCACGGAGGAAGAAATTAGGTCCAATTACATTCGTCT
AGCGCTGAAATGGCACCCAGATAAGCAAAAGGATCGAGATTGTGCAACTT
CGAGATTTCAAGAGATAAACGAGGCTTACCAGGTTTTGAGCGATCCTGTC
AAAAGGAGAGAATATGACAGCAAAGGGATGTTGCACATATATGATCGCAA
CATAATTGAGTATCTTAATCGCTACAAGGGCTTAATATTAACTTGCAATG
GTCTTGGGATGAGGCATTCAATTGTGTAATATGTTGTCAGCACAGTTGGG
GCAGTTCATATTGGGAGGCATAGAATTACCAATGCTGCAAATAGCATTGA
GGGCATGGAGAATAGCAGTTAATATGTATTGCGATAACTTGAATGCCCTT
GTATAATAGAAACCAATGCTAAAACATCGTTGTGTAACAGCTAATGCCTG
CCAATTTGGGGTTACATTGTCCAAAAAAAAAAAAAAAAAAAAAAAA
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