FC875707

Overview
NameFC875707
Unique NameFC875707
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14243 contig Ccv1_Contig14243:20..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875707 vs. ExPASy Swiss-Prot
Match: UCRI_SYNPW (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain WH7803) GN=petC PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.403e-55
Identity = 98/165 (59.39%), Postives = 121/165 (73.33%), Query Frame = 2
Query:  182 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTE 676
            T +PA  VP MG+RQ MNLL  G+V+      L P   +F PP    +GGGT+AKD +GN + A+ WL+TH  GDR+L +GLKGDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ ++EN  V    WT+
Sbjct:    2 TQMPAGDVPGMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPRAAGSGGGTSAKDELGNAVTASGWLSTHPAGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVENDNVFVSQWTD 166          
BLAST of FC875707 vs. ExPASy Swiss-Prot
Match: UCRIB_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Synechocystis sp. (strain PCC 6803) GN=petC2 PE=3 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 3.139e-55
Identity = 97/159 (61.01%), Postives = 122/159 (76.73%), Query Frame = 2
Query:  203 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTE 676
            VPD+G+RQ MNLL  G ++      L P   +  PP  G +GGG TAKDA+GND+   ++L +H  GDR L +GLKGDPTY+VV+ D T+A+YGINAVCTHLGCVVPWN++ENKF+CPCHGSQYN +G+VVRGPAPLSLALAHA + ++ K+V   WTE
Sbjct:   10 VPDLGRRQFMNLLTFGTITGVAAGALYPAVKYLIPPSSGGSGGGVTAKDALGNDVKVTEFLASHNAGDRVLAQGLKGDPTYIVVQGDDTIANYGINAVCTHLGCVVPWNASENKFMCPCHGSQYNAEGKVVRGPAPLSLALAHATVTDDDKLVLSTWTE 168          
BLAST of FC875707 vs. ExPASy Swiss-Prot
Match: UCRI_SYNP6 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petC PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.354e-55
Identity = 98/161 (60.87%), Postives = 118/161 (73.29%), Query Frame = 2
Query:  194 ADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTE 676
            A  VP MG+RQ MNLL  G+V+      L P   +F PP  G +GGG  AKDA+GND++ + +L  H  GDRTL +GLKGDPTYLVVE  + +  YGINAVCTHLGCVVPWN++ENKF CPCHGSQY+  G+VVRGPAPLSLALAH ++ + KV   PWTE
Sbjct:    7 ASDVPSMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPSSGGSGGGVAAKDALGNDVVLSKFLADHNVGDRTLVQGLKGDPTYLVVESSEAIGDYGINAVCTHLGCVVPWNASENKFKCPCHGSQYDATGKVVRGPAPLSLALAHVSVTDDKVFLSPWTE 167          
BLAST of FC875707 vs. ExPASy Swiss-Prot
Match: UCRI_SYNE7 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus elongatus (strain PCC 7942) GN=petC PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.354e-55
Identity = 98/161 (60.87%), Postives = 118/161 (73.29%), Query Frame = 2
Query:  194 ADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTE 676
            A  VP MG+RQ MNLL  G+V+      L P   +F PP  G +GGG  AKDA+GND++ + +L  H  GDRTL +GLKGDPTYLVVE  + +  YGINAVCTHLGCVVPWN++ENKF CPCHGSQY+  G+VVRGPAPLSLALAH ++ + KV   PWTE
Sbjct:    7 ASDVPSMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPSSGGSGGGVAAKDALGNDVVLSKFLADHNVGDRTLVQGLKGDPTYLVVESSEAIGDYGINAVCTHLGCVVPWNASENKFKCPCHGSQYDATGKVVRGPAPLSLALAHVSVTDDKVFLSPWTE 167          
BLAST of FC875707 vs. ExPASy Swiss-Prot
Match: UCRI_NOSSP (Cytochrome b6-f complex iron-sulfur subunit OS=Nostoc sp. (strain PCC 7906) GN=petC PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.354e-55
Identity = 98/158 (62.03%), Postives = 115/158 (72.78%), Query Frame = 2
Query:  203 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTE 676
            VPDMG+RQ MNLL  G V+      L P   +F PP  G AGGGTTAKD +GND+  + +L     GDR L +GLKGDPTY+VVE  + +  YGINA+CTHLGCVVPWN AENKF CPCHGSQY+  G+VVRGPAPLSLALAHAN  + K++  PWTE
Sbjct:   10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVKYFIPPASGGAGGGTTAKDELGNDVSLSKFLENRNAGDRALVQGLKGDPTYIVVENKQAIKDYGINAICTHLGCVVPWNVAENKFKCPCHGSQYDETGKVVRGPAPLSLALAHANTVDDKIILSPWTE 167          
BLAST of FC875707 vs. ExPASy Swiss-Prot
Match: UCRI_SYNR3 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain RCC307) GN=petC PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.993e-55
Identity = 98/165 (59.39%), Postives = 118/165 (71.52%), Query Frame = 2
Query:  182 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTE 676
            T I A  VP MG+RQ MNLL  G+V+      L P   +F PP    AGGGTTAKD +GND+ A+ WL  H  GDR+L +GLKGDPTYL+V+   ++  YGINA+CTHLGCVVPWN+  NKF+CPCHGSQY+  G+VVRGPAPLSLALAH N+EN  V    W+E
Sbjct:    2 TQISAKDVPGMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPKASGAGGGTTAKDELGNDVTASGWLADHKEGDRSLVQGLKGDPTYLIVDGPDSIGDYGINAICTHLGCVVPWNAGANKFMCPCHGSQYDATGKVVRGPAPLSLALAHVNVENDNVFVSQWSE 166          
BLAST of FC875707 vs. ExPASy Swiss-Prot
Match: UCRI_THEEB (Cytochrome b6-f complex iron-sulfur subunit OS=Thermosynechococcus elongatus (strain BP-1) GN=petC PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.133e-55
Identity = 97/159 (61.01%), Postives = 121/159 (76.10%), Query Frame = 2
Query:  203 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTE 676
            VPDMG+RQ MNLL  G ++      L P   +F PP  G  GGG  AKDA+GNDI  +++L  H PGDR+L +G+KGDPTY++V +D  +A+YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY++ G+VVRGPAPLSLAL  A + E+ K+VF PWTE
Sbjct:   10 VPDMGRRQFMNLLTFGTITGTALGALYPVVKYFIPPASGGTGGGAVAKDALGNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNVSENKFICPCHGSQYDSTGKVVRGPAPLSLALVKATVTEDDKLVFTPWTE 168          
BLAST of FC875707 vs. ExPASy Swiss-Prot
Match: UCRI_SYNSC (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9605) GN=petC PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.133e-55
Identity = 97/165 (58.79%), Postives = 122/165 (73.94%), Query Frame = 2
Query:  182 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTE 676
            T + +  VP MG+RQ MNLL  G+V+      L P A +F PP    +GGGT+AKD +GN I A+ WL++H  GDR+L +GLKGDPTYL+VE +  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY++ G+VVRGPAPLSLALA+ ++EN  V    WTE
Sbjct:    2 TQLSSSDVPGMGRRQFMNLLTFGSVTGVALGALYPVANYFIPPKAAGSGGGTSAKDELGNPITASGWLSSHPEGDRSLVQGLKGDPTYLIVEGEDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDSTGKVVRGPAPLSLALANVSVENDNVFVSQWTE 166          
BLAST of FC875707 vs. ExPASy Swiss-Prot
Match: UCRI_SYNS3 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9311) GN=petC PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.133e-55
Identity = 97/165 (58.79%), Postives = 120/165 (72.73%), Query Frame = 2
Query:  182 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTE 676
            T +PA  VP MG+RQ MNLL  G+V+      L P A +F PP     GGGT+AKD +GN + A+ WL++H  GDR+L +GLKGDPTYL+VE    + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ +++N  V    WTE
Sbjct:    2 TQMPASDVPGMGRRQFMNLLTFGSVTGVALGALYPVANYFIPPRAAGGGGGTSAKDELGNSVTASGWLSSHAEGDRSLVQGLKGDPTYLIVEGVDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVDNDNVFVSQWTE 166          
BLAST of FC875707 vs. ExPASy Swiss-Prot
Match: UCRI_SYNEL (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus elongatus GN=petC PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.133e-55
Identity = 97/159 (61.01%), Postives = 121/159 (76.10%), Query Frame = 2
Query:  203 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTE 676
            VPDMG+RQ MNLL  G ++      L P   +F PP  G  GGG  AKDA+GNDI  +++L  H PGDR+L +G+KGDPTY++V +D  +A+YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY++ G+VVRGPAPLSLAL  A + E+ K+VF PWTE
Sbjct:   10 VPDMGRRQFMNLLTFGTITGTALGALYPVVKYFIPPASGGTGGGAVAKDALGNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNVSENKFICPCHGSQYDSTGKVVRGPAPLSLALVKATVTEDDKLVFTPWTE 168          
The following BLAST results are available for this feature:
BLAST of FC875707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRI_SYNPW2.403e-5559.39Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRIB_SYNY33.139e-5561.01Cytochrome b6-f complex iron-sulfur subunit 2 OS=S... [more]
UCRI_SYNP65.354e-5560.87Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNE75.354e-5560.87Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_NOSSP5.354e-5562.03Cytochrome b6-f complex iron-sulfur subunit OS=Nos... [more]
UCRI_SYNR36.993e-5559.39Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_THEEB9.133e-5561.01Cytochrome b6-f complex iron-sulfur subunit OS=The... [more]
UCRI_SYNSC9.133e-5558.79Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNS39.133e-5558.79Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNEL9.133e-5561.01Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]

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Properties
Property NameValue
Genbank descriptionC31401H09EF CTVClemen1 Citrus clementina cDNA clone C31401H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875707 ID=FC875707; Name=FC875707; organism=Citrus clementina; type=EST; length=687bp
GGGTTGCCTCCAATAATTCTCCACAATGGCTTCCTCCTCTTCTCTCTCCT
CAGCAACTCCTTCTCAGCTATGCTCAAGCAAGAGTGGTATGTTCTGTCCA
TCGAGAGCTTTTCTTGTGAAACCAGCAAGGACCCAGATGGTGACAAAGAA
TCCAATGGGAATGAAGATCAAGTGCCAGGCTACAAGTATTCCAGCTGATA
GAGTGCCTGATATGGGCAAGAGGCAGCTCATGAATTTGCTTCTCTTGGGT
GCTGTTTCTCTTCCCACTGGATTTATGTTGGTTCCTTATGCGACCTTCTT
TGCCCCACCTGGTTTAGGAAGTGCTGGTGGTGGTACTACTGCCAAGGATG
CCATTGGCAATGACATCATTGCCGCTGATTGGCTTAACACGCACGGCCCT
GGGGACCGAACCCTCACCGAAGGATTGAAGGGAGATCCAACCTACCTTGT
TGTGGAAAAAGACAAAACACTTGCATCATATGGAATCAATGCTGTCTGCA
CTCACCTTGGATGTGTGGTGCCATGGAATTCAGCTGAGAACAAGTTCATC
TGTCCCTGCCACGGATCCCAATACAATAACCAAGGAAGAGTTGTGAGAGG
GCCTGCTCCATTGTCATTGGCATTGGCTCATGCCAACATTGAAAATGGTA
AGGTAGTCTTCGTTCCATGGACGGAACAGATTTCAGA
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