FC875709

Overview
NameFC875709
Unique NameFC875709
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875709 vs. ExPASy Swiss-Prot
Match: AT2A2_RAT (Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 OS=Rattus norvegicus GN=Atp2a2 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.520e-26
Identity = 75/176 (42.61%), Postives = 97/176 (55.11%), Query Frame = 3
Query:    3 VGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNP------CDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFVGR 512
            VG ATVG    W+         +  DG   V++ QL+++ QC                     DNP      C  F       MT++LSVLV IEM N+LN+LSE+ SLL MPPW N WL+ ++ +S  LHFLILYV  L  IF I PL+  +WL+VL I+ PV+L+DE LKFV R
Sbjct:  843 VGAATVGAAAWWF---------IAADGGPRVSFYQLSHFLQCKE-------------------DNPDFEGVDCAIFESPY--PMTMALSVLVTIEMCNALNSLSENQSLLRMPPWENIWLVGSICLSMSLHFLILYVEPLPLIFQITPLNLTQWLMVLKISLPVILMDETLKFVAR 988          
BLAST of FC875709 vs. ExPASy Swiss-Prot
Match: AT2A2_MOUSE (Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 OS=Mus musculus GN=Atp2a2 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.520e-26
Identity = 75/176 (42.61%), Postives = 97/176 (55.11%), Query Frame = 3
Query:    3 VGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNP------CDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFVGR 512
            VG ATVG    W+         +  DG   V++ QL+++ QC                     DNP      C  F       MT++LSVLV IEM N+LN+LSE+ SLL MPPW N WL+ ++ +S  LHFLILYV  L  IF I PL+  +WL+VL I+ PV+L+DE LKFV R
Sbjct:  843 VGAATVGAAAWWF---------IAADGGPRVSFYQLSHFLQCKE-------------------DNPDFDGVDCAIFESPY--PMTMALSVLVTIEMCNALNSLSENQSLLRMPPWENIWLVGSICLSMSLHFLILYVEPLPLIFQITPLNLTQWLMVLKISLPVILMDETLKFVAR 988          
BLAST of FC875709 vs. ExPASy Swiss-Prot
Match: AT2A1_BOVIN (Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 OS=Bos taurus GN=ATP2A1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.520e-26
Identity = 75/170 (44.12%), Postives = 98/170 (57.65%), Query Frame = 3
Query:    3 VGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFVGR 512
            VG ATVG    W+ +          DG   VTYSQLT++ +C        SP         F    C+ F   +   MT++LSVLV IEM N+LN+LSE+ SL+ MPPWVN WL+ ++ +S  LHFLILYV  L  IF +  L    WL+VL I+ PV+ +DE+LKFV R
Sbjct:  843 VGAATVGAAAWWFLYAE--------DGPH-VTYSQLTHFMKCSEH-----SP--------DFEGVDCEVFEAPQ--PMTMALSVLVTIEMCNALNSLSENQSLVRMPPWVNIWLVGSIGLSMSLHFLILYVDPLPMIFKLQALDLYHWLMVLKISLPVIGLDEILKFVAR 988          
BLAST of FC875709 vs. ExPASy Swiss-Prot
Match: AT2A2_RABIT (Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 OS=Oryctolagus cuniculus GN=ATP2A2 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.986e-26
Identity = 75/176 (42.61%), Postives = 97/176 (55.11%), Query Frame = 3
Query:    3 VGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNP------CDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFVGR 512
            VG ATVG    W+         +  DG   V++ QL+++ QC                     DNP      C  F       MT++LSVLV IEM N+LN+LSE+ SLL MPPW N WL+ ++ +S  LHFLILYV  L  IF I PL+  +WL+VL I+ PV+L+DE LKFV R
Sbjct:  843 VGAATVGAAAWWF---------IAADGGPRVSFYQLSHFLQCKE-------------------DNPDFEGVDCAIFESPY--PMTMALSVLVTIEMCNALNSLSENQSLLRMPPWENIWLVGSICLSMSLHFLILYVEPLPLIFQITPLNVTQWLMVLKISLPVILMDETLKFVAR 988          
BLAST of FC875709 vs. ExPASy Swiss-Prot
Match: AT2A2_HUMAN (Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 OS=Homo sapiens GN=ATP2A2 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.986e-26
Identity = 75/176 (42.61%), Postives = 97/176 (55.11%), Query Frame = 3
Query:    3 VGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNP------CDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFVGR 512
            VG ATVG    W+         +  DG   V++ QL+++ QC                     DNP      C  F       MT++LSVLV IEM N+LN+LSE+ SLL MPPW N WL+ ++ +S  LHFLILYV  L  IF I PL+  +WL+VL I+ PV+L+DE LKFV R
Sbjct:  843 VGAATVGAAAWWF---------IAADGGPRVSFYQLSHFLQCKE-------------------DNPDFEGVDCAIFESPY--PMTMALSVLVTIEMCNALNSLSENQSLLRMPPWENIWLVGSICLSMSLHFLILYVEPLPLIFQITPLNVTQWLMVLKISLPVILMDETLKFVAR 988          
BLAST of FC875709 vs. ExPASy Swiss-Prot
Match: AT2A3_HUMAN (Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 OS=Homo sapiens GN=ATP2A3 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.387e-26
Identity = 71/170 (41.76%), Postives = 102/170 (60.00%), Query Frame = 3
Query:    3 VGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFVGR 512
            VG+ATV     W+ + +        +G  +  Y QL N+ +C           +  N +F   D  C+ F        T++LSVLV IEM N+LN++SE+ SLL MPPW+NPWLL+A+++S  LHFLIL VP L  IF + PLS  +W++VL I+ PV+L+DE LK++ R
Sbjct:  844 VGLATVAAATWWFVYDA--------EGPHINFY-QLRNFLKC-----------SEDNPLFAGID--CEVFESRF--PTTMALSVLVTIEMCNALNSVSENQSLLRMPPWMNPWLLVAVAMSMALHFLILLVPPLPLIFQVTPLSGRQWVVVLQISLPVILLDEALKYLSR 989          
BLAST of FC875709 vs. ExPASy Swiss-Prot
Match: AT2A3_RAT (Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 OS=Rattus norvegicus GN=Atp2a3 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.745e-25
Identity = 71/170 (41.76%), Postives = 100/170 (58.82%), Query Frame = 3
Query:    3 VGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFVGR 512
            VG+ATV     W+ + +        +G   VT+ QL N+ +C           +  N +F   D  C+ F        T++LSVLV IEM N+LN++SE+ SLL MPPW+NPWLL A+ +S  LHFLIL VP L  IF + PLS  +W +VL ++ PV+L+DE LK++ R
Sbjct:  844 VGLATVAAATWWFLYDA--------EGPQ-VTFHQLRNFLKC-----------SEDNPLFAGID--CEVFESRF--PTTMALSVLVTIEMCNALNSVSENQSLLRMPPWLNPWLLGAVVMSMALHFLILLVPPLPLIFQVTPLSGRQWGVVLQMSLPVILLDEALKYLSR 989          
BLAST of FC875709 vs. ExPASy Swiss-Prot
Match: AT2A3_MOUSE (Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 OS=Mus musculus GN=Atp2a3 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.090e-24
Identity = 70/170 (41.18%), Postives = 97/170 (57.06%), Query Frame = 3
Query:    3 VGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFVGR 512
            VG+ATV     W+ + +        +G   VT+ QL N+ +C        +P  AG     F                T++LSVLV IEM N+LN++SE+ SLL MPPW+NPWLL A+ +S  LHFLIL VP L  IF + PLS  +W +VL ++ PV+L+DE LK++ R
Sbjct:  844 VGLATVAAATWWFLYDA--------EGPQ-VTFYQLRNFLKCSE-----DNPLFAGIDCKVFESR----------FPTTMALSVLVTIEMCNALNSVSENQSLLRMPPWLNPWLLGAVVMSMALHFLILLVPPLPLIFQVTPLSGRQWGVVLQMSLPVILLDEALKYLSR 989          
BLAST of FC875709 vs. ExPASy Swiss-Prot
Match: AT2A3_CHICK (Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 OS=Gallus gallus GN=ATP2A3 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.423e-24
Identity = 69/170 (40.59%), Postives = 101/170 (59.41%), Query Frame = 3
Query:    3 VGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFVGR 512
            VG+ATVG    W+ + +        +G   V++ QL N+ +C           T  N +F   +  C+ F        T++LSVLV IEM N+LN++SE+ SLL MPPW+N WLL A+ +S  LHF ILYV  +  IF + PLS+ +W++VL I+ PV+L+DE LK++ R
Sbjct:  844 VGLATVGAATWWFLYDA--------EGPQ-VSFHQLRNFMRC-----------TEDNPIFEGVN--CEIFESRY--PTTMALSVLVTIEMCNALNSVSENQSLLRMPPWLNIWLLGAIVMSMALHFFILYVKPMPLIFQVTPLSWPQWVVVLKISLPVILLDEGLKYLSR 989          
BLAST of FC875709 vs. ExPASy Swiss-Prot
Match: ATC1_DUNBI (Cation-transporting ATPase CA1 OS=Dunaliella bioculata GN=CA1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.140e-24
Identity = 71/166 (42.77%), Postives = 97/166 (58.43%), Query Frame = 3
Query:    3 VGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLK 500
            VGI TV  FI WY       I+    G+  +T+SQLT++  C S       P  A +         C+ FH       T+S+SVLV +EMFN+LN LSED SLL +PPW N WL+ A++ S  LHF ILY    A +FG+  LSF EW +V+ ++ PV+L+DE++K
Sbjct:  859 VGIVTVYGFIWWY-------ISFPEGGN--MTWSQLTHFQACAS------QPGGAKD---------CEVFHSKH--PTTISMSVLVVVEMFNALNNLSEDSSLLRIPPWDNKWLVGAIATSMALHFGILYTGASA-MFGVTGLSFAEWTMVIKLSAPVILVDEIMK 997          
The following BLAST results are available for this feature:
BLAST of FC875709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
AT2A2_RAT1.520e-2642.61Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A2_MOUSE1.520e-2642.61Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A1_BOVIN1.520e-2644.12Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A2_RABIT1.986e-2642.61Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A2_HUMAN1.986e-2642.61Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A3_HUMAN3.387e-2641.76Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A3_RAT3.745e-2541.76Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A3_MOUSE1.090e-2441.18Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A3_CHICK1.423e-2440.59Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
ATC1_DUNBI4.140e-2442.77Cation-transporting ATPase CA1 OS=Dunaliella biocu... [more]

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Properties
Property NameValue
Genbank descriptionC31401H11EF CTVClemen1 Citrus clementina cDNA clone C31401H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875709 ID=FC875709; Name=FC875709; organism=Citrus clementina; type=EST; length=631bp
ATGTTGGAATAGCAACGGTTGGTGTTTTCATCATTTGGTATACACATGGT
TCTTTCTTGGGCATCAATCTCATTGGCGACGGTCACAGCCTTGTCACATA
CTCCCAGCTCACTAACTGGGGCCAGTGCCCATCCTGGGGGAATTTTACCG
TTTCTCCCTTCACAGCTGGTAATCAGGTTTTCACATTCAACGATAACCCT
TGTGATTATTTCCATGGCGGCAAAGTAAAAGCAATGACACTTTCTCTTTC
TGTGCTGGTCGCCATTGAAATGTTTAACTCCCTCAATGCCCTCTCTGAGG
ATGGAAGCCTATTGACAATGCCCCCATGGGTCAACCCTTGGCTCCTTTTG
GCTATGTCCGTCTCCTTTGGCCTACACTTCTTGATCCTCTACGTGCCGTT
CCTAGCTCAAATTTTTGGTATCGTGCCCTTAAGCTTTAACGAATGGCTCT
TGGTATTGGCCATTGCATTCCCTGTGGTATTGATCGATGAGGTTCTAAAG
TTTGTCGGCAGATGTACAAATGGATCTCAAACATCAAGAAGAAAATCTTC
AAAACCAAAATCAGAGTGAGTGACCGGCAAATGAAGTGCCATCAATTGGT
TAGTACCATTCCAATGGTCCTCTCGCACACT
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