FC876162

Overview
NameFC876162
Unique NameFC876162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10311 contig Ccv1_Contig10311:2..362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_THIDA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=metE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.559e-16
Identity = 44/101 (43.56%), Postives = 64/101 (63.37%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNAS 351
            +H +G+PR+G +RELKFALES+W G+SS + L+ V ADLR   W+   +A +  +P   F++YDQVLD +  LG +P R     G    D  F +ARG ++
Sbjct:    4 THNLGFPRIGARRELKFALESYWKGESSRDALEAVGADLRRRHWQ--DQAALDLVPVGDFAFYDQVLDMSFTLGNLPERVQGFDGH-PLDNAFRVARGRSA 101          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_NEIMF (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=metE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.559e-16
Identity = 36/98 (36.73%), Postives = 57/98 (58.16%), Query Frame = 1
Query:   52 HIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGN 345
            H  G+PR+G  RELKFA E +W  + S ++L  V+ DLR   WK  + A   ++    F++YD +LD     GA+P R+ ++   +  + +F +ARGN
Sbjct:    5 HFSGFPRVGAFRELKFAQEKYWRKEISEQELLAVAKDLREKNWKHQAAANADFVAVGDFTFYDHILDLQVATGAIPARFGFDSQNLSLEQFFQLARGN 102          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_LACLS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=metE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.559e-16
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRY-NWNGGEIGFDVYFSMARG 342
            M   I+ +PR+G  RELKFALE ++  + S  +LQ V+ +LR   WK   EAGI Y  SN FS+YDQ LD +  LG +P RY      E+  D  F++ARG
Sbjct:    1 MKKSIIAFPRIGSNRELKFALEKYFRKEISEAELQIVAKELRLESWKSQKEAGIDYPISNDFSFYDQTLDLSIALGVIPERYKKLKLNEL--DTLFALARG 99          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BIFLI (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=metE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.559e-16
Identity = 40/96 (41.67%), Postives = 57/96 (59.38%), Query Frame = 1
Query:   55 IVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            + G+PR+G  RELK  +E +W G +    ++  +A+LR+  W+    AGI  I SN FSYYDQ+LDT  +L  +P RY     +   D  F+MARG
Sbjct:    7 VSGFPRIGQNRELKKIIEGYWKGANDLAAVKATAAELRAKHWRLQQAAGIDLIASNDFSYYDQMLDTAILLNVIPQRYQRLAFDDQEDTLFAMARG 102          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_PSEA7 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas aeruginosa (strain PA7) GN=metE PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.659e-16
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +H +G+PR+G  RELK ALE++W G+     L +V  +LR   W+   +AGI+ +P   F++YDQVL  +   G +P R+    G+   D  F+MARG A
Sbjct:    4 AHTLGFPRIGRDRELKKALEAYWKGELDQPGLLQVGRELRRQHWQLQKDAGIELLPVGDFAWYDQVLAHSLAFGVIPERFRPADGQPTLDTLFAMARGVA 103          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_COXB2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Coxiella burnetii (strain CbuG_Q212) GN=metE PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.659e-16
Identity = 41/100 (41.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +H +G+PR+G KRE+K  +E++W G+ S + LQ+ + +L+ + WK  +EAG+  IP   FS+YD VLD    +GA+P R+      I  D  F  ARG A
Sbjct:    4 AHNLGFPRIGIKREMKKTVEAYWRGEISQQQLQQQAIELQLTNWKIQAEAGVDLIPVGDFSWYDHVLDMAVRVGAIPSRFKALNSNI-TDTMFCTARGQA 102          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_PSEPW (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas putida (strain W619) GN=metE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.473e-16
Identity = 41/102 (40.20%), Postives = 63/102 (61.76%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRY-NWNGGEIGFDVYFSMARGNAS 351
            +H +G+PR+G  RELK A E+FW G+     L+KV  DLR++ W+   +AGI+ +P   F++YDQVL  +   G +P R+   +G +      F+MARG A+
Sbjct:    4 AHNLGFPRIGRDRELKKAQEAFWKGELDEAGLRKVGRDLRAAHWQAQKDAGIELLPVGDFAWYDQVLTHSLTFGVIPERFRGHDGAKPTLQTLFAMARGVAT 105          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_NEIMB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Neisseria meningitidis serogroup B GN=metE PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.473e-16
Identity = 36/98 (36.73%), Postives = 56/98 (57.14%), Query Frame = 1
Query:   52 HIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGN 345
            H  G+PR+G  RELKFA E +W  + S ++L  V+ DLR   WK    A   ++    F++YD +LD     GA+P R+ ++   +  + +F +ARGN
Sbjct:    5 HFSGFPRVGAFRELKFAQEKYWRKEISEQELLAVAKDLREKNWKHQVAANADFVAVGDFTFYDHILDLQVATGAIPARFGFDSQNLSLEQFFQLARGN 102          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BURPS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia pseudomallei GN=metE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.473e-16
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSAD----LRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            +HI+G+PR+G +RELKFALE +W   +SA D ++   D    LR+  W+   +AG+  +    F++YD VL T A +G +P R+ ++   +    YF+ ARGNA+ PA
Sbjct:    4 AHILGFPRIGAQRELKFALERYWRDGASA-DAERALVDTGRALRAEHWRIERDAGLDCVTVGDFAWYDHVLTTLAHVGGLPRRFGFDARALTLADYFAAARGNAAQPA 110          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BURP6 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia pseudomallei (strain 668) GN=metE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.473e-16
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSAD----LRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            +HI+G+PR+G +RELKFALE +W   +SA D ++   D    LR+  W+   +AG+  +    F++YD VL T A +G +P R+ ++   +    YF+ ARGNA+ PA
Sbjct:    4 AHILGFPRIGAQRELKFALERYWRDGASA-DAERALVDTGRALRAEHWRIERDAGLDCVTVGDFAWYDHVLTTLAHVGGLPRRFGFDAHALTLADYFAAARGNAAQPA 110          
The following BLAST results are available for this feature:
BLAST of FC876162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
METE_THIDA1.559e-1643.565-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NEIMF1.559e-1636.735-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_LACLS1.559e-1645.545-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BIFLI1.559e-1641.675-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEA72.659e-1640.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_COXB22.659e-1641.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEPW3.473e-1640.205-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NEIMB3.473e-1636.735-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURPS3.473e-1639.815-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURP63.473e-1639.815-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC32001A06EF DevOvary1 Citrus clementina cDNA clone C32001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876162 ID=FC876162; Name=FC876162; organism=Citrus clementina; type=EST; length=361bp
CTCGACTCTCAATTTCTCTGCTCTTCTTTCTCTGTTTGTAAAATGGCATC
TCACATCGTTGGATACCCACGCATGGGCCCCAAGAGGGAGCTCAAGTTCG
CGTTGGAATCCTTCTGGGATGGCAAGAGCAGCGCCGAGGATTTGCAAAAG
GTGTCCGCTGATCTCAGATCCTCCATCTGGAAACAGATGTCCGAGGCCGG
GATCAAATACATTCCCAGCAACACTTTCTCCTACTACGACCAAGTGCTCG
ACACCACCGCAATGCTCGGTGCCGTGCCACCTAGGTATAACTGGAACGGC
GGCGAGATTGGATTCGATGTTTACTTCTCCATGGCCAGAGGAAACGCCTC
TGTTCCCGCTA
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