FC876162

Overview
NameFC876162
Unique NameFC876162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10311 contig Ccv1_Contig10311:2..362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_STRSY (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptococcus suis (strain 05ZYH33) GN=metE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.251e-14
Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            M + I+G+PR+G  RELKF  E ++  +   E+L + + DLR+  W  + EAGI  IPSN FS+YD VLD   +   +P     +      + YF++ARG
Sbjct:    1 MTTTIIGFPRIGEHRELKFITEKYFRNEIPQEELLEAAKDLRAKHWNIVKEAGITEIPSNDFSHYDNVLDAAVLFNIIPKAVQ-DLELTDLEKYFALARG 99          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_STRGC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=metE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.251e-14
Identity = 41/101 (40.59%), Postives = 62/101 (61.39%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEI-GFDVYFSMARG 342
            M++ I+G+PR+G  RELKF  E ++  + SA++L   + +LR+  W  + E GI  IPSN FS+YD VLD   +   VP   +  G E+   + YF++ARG
Sbjct:    1 MSTTIIGFPRLGEFRELKFTTEKYFRKEISADELLAAAKELRAKHWNIVKEKGISEIPSNDFSHYDNVLDAAFLFNVVPS--SVRGLELTDLERYFALARG 99          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_CORGL (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Corynebacterium glutamicum GN=metE PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.245e-14
Identity = 42/111 (37.84%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   46 ASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYN------WNGGEIGFDVYFSMARGNASVPA 360
            +S + G PR+G KRELKFALE +W+G     +L + +  L ++    +S  G+  +P    SYYD +LDT A+LG +P R++       +G  +  D YF  ARG  ++PA
Sbjct:    6 SSTVAGLPRIGAKRELKFALEGYWNGSIEGRELAQTARQLVNTASDSLS--GLDSVPFAGRSYYDAMLDTAAILGVLPERFDDIADHENDGLPLWIDRYFGAARGTETLPA 114          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_CORGB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Corynebacterium glutamicum (strain R) GN=metE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.245e-14
Identity = 42/111 (37.84%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   46 ASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYN------WNGGEIGFDVYFSMARGNASVPA 360
            +S + G PR+G KRELKFALE +W+G     +L + +  L ++    +S  G+  +P    SYYD +LDT A+LG +P R++       +G  +  D YF  ARG  ++PA
Sbjct:    6 SSTVAGLPRIGAKRELKFALEGYWNGSIEGRELAQTARQLVNTASDSLS--GLDSVPFAGRSYYDAMLDTAAILGVLPERFDDIADHENDGLPLWIDRYFGAARGTETLPA 114          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_STRTD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=metE PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.545e-14
Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            M++ I+G+PR+G  RELKF  E ++  + +A++L   + DLR+  W  + E GI  IPSN FS+YD  LD   +   VP     N      + YF++ARG
Sbjct:    1 MSTTIIGFPRLGEFRELKFTTEKYFRNEITADELLAAAKDLRAKHWNIVKEKGITEIPSNDFSHYDNFLDAAFLFNVVPESVK-NLDLTELEQYFALARG 99          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BACHD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bacillus halodurans GN=metE PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.545e-14
Identity = 40/106 (37.74%), Postives = 55/106 (51.89%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            M +  +GYPR+G  RE K ALESFW   ++ E L     +LR +  +   E  +  IP   F+ YD VLD   M G +P R+   G       YF+MARG+ +  A
Sbjct:    1 MLTSNLGYPRIGENREWKKALESFWANDTTEEQLLATMKELRLNHLRVQQEQEVDLIPVGDFTLYDHVLDMAVMFGIIPKRFLQQGDTPTLSTYFAMARGSKNAQA 106          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_RUTMC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=metE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.241e-14
Identity = 38/101 (37.62%), Postives = 60/101 (59.41%), Query Frame = 1
Query:   52 HIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASV 354
            H +G+PR+G  RELKFALE +W    S ++L + ++ L    W+  ++  + ++P   FS+YD VLD + +LG +P R   N  +   D YF +ARG A +
Sbjct:    5 HNLGFPRIGRHRELKFALEKYWSNAISQDELLQTASTLCKQYWQNQNK--LDWVPVGDFSFYDHVLDMSFLLGNIPKRAE-NLSDNELDNYFRVARGRAFI 102          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_STRMU (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptococcus mutans GN=metE PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.458e-14
Identity = 38/96 (39.58%), Postives = 54/96 (56.25%), Query Frame = 1
Query:   58 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGN 345
            +GYPR+G  RE K  +E++W GK S  DL   + +LR    K+   AG+  IP   FS YD +LD +     +P R+      I  D+YF++ARGN
Sbjct:    7 LGYPRLGENREWKKLIEAYWAGKVSKNDLFAGAKELRLDFLKKQLNAGLDLIPVGDFSLYDHILDLSVQFNIIPKRFAKE--PIDIDLYFAIARGN 100          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BACCN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=metE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.235e-13
Identity = 42/103 (40.78%), Postives = 57/103 (55.34%), Query Frame = 1
Query:   43 MASHI--VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGN 345
            MA H   +GYPR+G +RE K  LE+FW  K   + L     ++         E GI +IP   F+YYD VLDT  MLG +P R+  +      D+YF+MARG+
Sbjct:    1 MALHTSNLGYPRIGLQREWKKTLEAFWAQKIDEQQLITTMKEIHLEHLNVQKEKGIDFIPIGDFTYYDHVLDTAYMLGFIPSRF--SNFTSYLDIYFAMARGS 101          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_STRPI (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=metE PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.107e-13
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            M++ IVG+PR+G  RELKF  E ++  + S E+L   + DLR+  W  + E GI  IPSN FS+YD  LD   +   VP     N      + YF++ RG
Sbjct:    1 MSTTIVGFPRLGEFRELKFTTEKYFRKEISEEELLAAAKDLRAKHWNIVKEKGITEIPSNDFSHYDNFLDAAFLFNVVPASVQ-NLDLSDLERYFALGRG 99          
The following BLAST results are available for this feature:
BLAST of FC876162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
METE_STRSY3.251e-1439.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STRGC3.251e-1440.595-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CORGL4.245e-1437.845-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CORGB4.245e-1437.845-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STRTD5.545e-1439.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BACHD5.545e-1437.745-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RUTMC7.241e-1437.625-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STRMU9.458e-1439.585-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BACCN1.235e-1340.785-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STRPI2.107e-1340.005-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC32001A06EF DevOvary1 Citrus clementina cDNA clone C32001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876162 ID=FC876162; Name=FC876162; organism=Citrus clementina; type=EST; length=361bp
CTCGACTCTCAATTTCTCTGCTCTTCTTTCTCTGTTTGTAAAATGGCATC
TCACATCGTTGGATACCCACGCATGGGCCCCAAGAGGGAGCTCAAGTTCG
CGTTGGAATCCTTCTGGGATGGCAAGAGCAGCGCCGAGGATTTGCAAAAG
GTGTCCGCTGATCTCAGATCCTCCATCTGGAAACAGATGTCCGAGGCCGG
GATCAAATACATTCCCAGCAACACTTTCTCCTACTACGACCAAGTGCTCG
ACACCACCGCAATGCTCGGTGCCGTGCCACCTAGGTATAACTGGAACGGC
GGCGAGATTGGATTCGATGTTTACTTCTCCATGGCCAGAGGAAACGCCTC
TGTTCCCGCTA
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