FC876162

Overview
NameFC876162
Unique NameFC876162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10311 contig Ccv1_Contig10311:2..362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_STRR6 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=metE PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.752e-13
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = 1 
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            M++ I+G+PR+G  RELKF  E ++  + S E+L   + DLR+  W  + E GI  IPSN FS+YD  LD   +   VP     N      + YF++ RG
Sbjct:    1 MSTTIIGFPRLGEFRELKFTTEKYFRKEISEEELLAAAKDLRAKHWNIVKEKGITEIPSNDFSHYDNFLDAAFLFNVVPASVQ-NLDLSDLERYFALGRG 99
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_STRPN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptococcus pneumoniae GN=metE PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.752e-13
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = 1 
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            M++ I+G+PR+G  RELKF  E ++  + S E+L   + DLR+  W  + E GI  IPSN FS+YD  LD   +   VP     N      + YF++ RG
Sbjct:    1 MSTTIIGFPRLGEFRELKFTTEKYFRKEISEEELLAAAKDLRAKHWNIVKEKGITEIPSNDFSHYDNFLDAAFLFNVVPASVQ-NLDLSDLERYFALGRG 99
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_STRP4 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=metE PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.752e-13
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = 1 
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            M++ I+G+PR+G  RELKF  E ++  + S E+L   + DLR+  W  + E GI  IPSN FS+YD  LD   +   VP     N      + YF++ RG
Sbjct:    1 MSTTIIGFPRLGEFRELKFTTEKYFRKEISEEELLAAAKDLRAKHWNIVKEKGITEIPSNDFSHYDNFLDAAFLFNVVPASVQ-NLDLSDLERYFALGRG 99
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_STRP2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=metE PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.752e-13
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = 1 
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            M++ I+G+PR+G  RELKF  E ++  + S E+L   + DLR+  W  + E GI  IPSN FS+YD  LD   +   VP     N      + YF++ RG
Sbjct:    1 MSTTIIGFPRLGEFRELKFTTEKYFRKEISEEELLAAAKDLRAKHWNIVKEKGITEIPSNDFSHYDNFLDAAFLFNVVPASVQ-NLDLSDLERYFALGRG 99
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_PSEE4 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas entomophila (strain L48) GN=metE PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 37/99 (37.37%), Postives = 57/99 (57.58%), Query Frame = 1 
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYN-WNGGEIGFDVYFSMARG 342
            +H +G+PR+G  RELK A E++W G+     L  V   LR++ W+    AGI+ +P   F++YDQVL  +   G +P R+   +G +      F+MARG
Sbjct:    4 AHNLGFPRIGRDRELKKAQEAYWKGELDEAGLCAVGRGLRAAHWQAQKAAGIELLPVGDFAWYDQVLTHSLTFGVIPERFRAKDGAKPTLQTLFAMARG 102
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BURVG (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=metE PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.130e-13
Identity = 37/101 (36.63%), Postives = 59/101 (58.42%), Query Frame = 1 
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNAS 351
            +H +G+PR+G +RELKF LE +W+G ++ ++L  + A LR   W    +  +   P   F++YD VLD +  LG +P R     G+   D YF +ARG ++
Sbjct:    4 THNLGFPRIGAQRELKFGLERYWNGDATRDELTALGAALRRRHWSDQRD--LDLAPLGDFAFYDHVLDMSFTLGNLPKRVQDFHGD-ALDNYFRVARGRSA 101
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_STAAW (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Staphylococcus aureus (strain MW2) GN=metE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.778e-12
Identity = 37/96 (38.54%), Postives = 52/96 (54.17%), Query Frame = 1 
Query:   58 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGN 345
            +G+PR+G KRE K A+ES+W  K S E+L +   DL            +  IP   FS YD +LDT+ +   +P R+   G  I  D+ F +ARGN
Sbjct:    9 LGFPRLGRKREWKKAIESYWAKKISKEELDQTLTDLHKENLLLQKYYHLDSIPVGDFSLYDHILDTSLLFNIIPERF--QGRTIDDDLLFDIARGN 102
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_STAAT (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=metE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.778e-12
Identity = 37/96 (38.54%), Postives = 52/96 (54.17%), Query Frame = 1 
Query:   58 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGN 345
            +G+PR+G KRE K A+ES+W  K S E+L +   DL            +  IP   FS YD +LDT+ +   +P R+   G  I  D+ F +ARGN
Sbjct:    9 LGFPRLGRKREWKKAIESYWAKKISKEELDQTLTDLHKENLLLQKYYHLDSIPVGDFSLYDHILDTSLLFNIIPERF--QGRTIDDDLLFDIARGN 102
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_STAAS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Staphylococcus aureus (strain MSSA476) GN=metE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.778e-12
Identity = 37/96 (38.54%), Postives = 52/96 (54.17%), Query Frame = 1 
Query:   58 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGN 345
            +G+PR+G KRE K A+ES+W  K S E+L +   DL            +  IP   FS YD +LDT+ +   +P R+   G  I  D+ F +ARGN
Sbjct:    9 LGFPRLGRKREWKKAIESYWAKKISKEELDQTLTDLHKENLLLQKYYHLDSIPVGDFSLYDHILDTSLLFNIIPERF--QGRTIDDDLLFDIARGN 102
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_STAAR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Staphylococcus aureus (strain MRSA252) GN=metE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.778e-12
Identity = 37/96 (38.54%), Postives = 52/96 (54.17%), Query Frame = 1 
Query:   58 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGN 345
            +G+PR+G KRE K A+ES+W  K S E+L +   DL            +  IP   FS YD +LDT+ +   +P R+   G  I  D+ F +ARGN
Sbjct:    9 LGFPRLGRKREWKKAIESYWAKKISKEELDQTLTDLHKENLLLQKYYHLDSIPVGDFSLYDHILDTSLLFNIIPERF--QGRTIDDDLLFDIARGN 102
The following BLAST results are available for this feature:
BLAST of FC876162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
METE_STRR62.752e-1339.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STRPN2.752e-1339.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STRP42.752e-1339.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STRP22.752e-1339.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEE43.594e-1337.375-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURVG6.130e-1336.635-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STAAW6.778e-1238.545-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STAAT6.778e-1238.545-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STAAS6.778e-1238.545-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STAAR6.778e-1238.545-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC32001A06EF DevOvary1 Citrus clementina cDNA clone C32001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876162 ID=FC876162; Name=FC876162; organism=Citrus clementina; type=EST; length=361bp
CTCGACTCTCAATTTCTCTGCTCTTCTTTCTCTGTTTGTAAAATGGCATC
TCACATCGTTGGATACCCACGCATGGGCCCCAAGAGGGAGCTCAAGTTCG
CGTTGGAATCCTTCTGGGATGGCAAGAGCAGCGCCGAGGATTTGCAAAAG
GTGTCCGCTGATCTCAGATCCTCCATCTGGAAACAGATGTCCGAGGCCGG
GATCAAATACATTCCCAGCAACACTTTCTCCTACTACGACCAAGTGCTCG
ACACCACCGCAATGCTCGGTGCCGTGCCACCTAGGTATAACTGGAACGGC
GGCGAGATTGGATTCGATGTTTACTTCTCCATGGCCAGAGGAAACGCCTC
TGTTCCCGCTA
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