FC876172

Overview
NameFC876172
Unique NameFC876172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:93..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_HAEIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Haemophilus influenzae GN=gapA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.782e-21
Identity = 54/114 (47.37%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            K+GINGFGRIGR+                ND  ID +YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + WG  GVD  VE++G+F            GAK
Sbjct:    4 KIGINGFGRIGRIVFRAAQHRDDIEVVGIND-LIDVEYMAYMLKYDSTHGRFDGTVEV-KDGNLVVNGKTIRVTAERDPANLNWGAIGVDIAVEATGLFLTDETARKHITAGAK 115          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.782e-21
Identity = 56/123 (45.53%), Postives = 67/123 (54.47%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            K+GINGFGRIGRL                NDPFI   YM YMFKYDS HG +K   + V D+ TL    K + VF +R+P EIP    G +Y+VES+GVF           GGAK   IS+ S
Sbjct:    5 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGAWKHHELKVKDEKTLLFGEKPVVVFGRRNPEEIPRASTGAEYIVESTGVFTDKDKAAAHLKGGAKKVIISAPS 127          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_BOLED (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Boletus edulis GN=GPD PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.551e-21
Identity = 52/93 (55.91%), Postives = 59/93 (63.44%), Query Frame = 1
Query:  454 NDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            NDPFID  YM YMFKYDS HG F+G ++   D  L INGK I VF++RDPA IPWG  G  YVVES+GVF           GGAK   IS+ S
Sbjct:   12 NDPFIDLDYMVYMFKYDSVHGRFEGEVST-KDGKLVINGKAITVFAERDPANIPWGTVGAQYVVESTGVFTTIEKASAHLKGGAKKVIISAPS 103          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_SALTY (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhimurium GN=gapA PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.551e-21
Identity = 54/114 (47.37%), Postives = 67/114 (58.77%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            KVGINGFGRIGR+                ND  +DA+YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + W + GVD V E++G+F            GAK
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDAEYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAK 115          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_SALTI (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhi GN=gapA PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.551e-21
Identity = 54/114 (47.37%), Postives = 67/114 (58.77%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            KVGINGFGRIGR+                ND  +DA+YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + W + GVD V E++G+F            GAK
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDAEYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAK 115          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_ESCF3 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gapA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.288e-20
Identity = 54/114 (47.37%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            KVGINGFGRIGR+                ND  +DA YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + W + GVD V E++G+F            GAK
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAK 115          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_LACDT (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Lactarius deterrimus GN=GPD PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.682e-20
Identity = 52/93 (55.91%), Postives = 59/93 (63.44%), Query Frame = 1
Query:  454 NDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            +DPFID +YM YMFKYDS HG FKGT+ +  D  L I+G  I VF +RDPA I WG  G DYVVESSGVF           GGAK   IS+ S
Sbjct:   12 SDPFIDLQYMVYMFKYDSVHGRFKGTVEI-KDGKLVIDGHPITVFQERDPANIQWGSVGADYVVESSGVFTTVDKASAHLKGGAKKVIISAPS 103          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gap1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.197e-20
Identity = 54/122 (44.26%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            K+GINGFGRIGRL                ND  + A  +AY+FKYDSTHG + GT+ V  +  + I+ + I  FS+R+PA++PWGD G DYVVES+G+F            GAK   IS+ S
Sbjct:    3 KIGINGFGRIGRLVARIAMANPQVTLVGIND-LVPASNLAYLFKYDSTHGSYGGTV-VAKEEGIVIDDQFIPCFSQRNPAQLPWGDLGADYVVESTGLFTTYATAENHLKAGAKRVIISAPS 122          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_SHIFL (Glyceraldehyde-3-phosphate dehydrogenase A OS=Shigella flexneri GN=gapA PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.197e-20
Identity = 54/114 (47.37%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            KVGINGFGRIGR+                ND  +DA YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + W + GVD V E++G+F            GAK
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAK 115          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_ECOLI (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli (strain K12) GN=gapA PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.197e-20
Identity = 54/114 (47.37%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            KVGINGFGRIGR+                ND  +DA YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + W + GVD V E++G+F            GAK
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAK 115          
The following BLAST results are available for this feature:
BLAST of FC876172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
G3P_HAEIN5.782e-2147.37Glyceraldehyde-3-phosphate dehydrogenase OS=Haemop... [more]
G3PC_ANTMA5.782e-2145.53Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_BOLED7.551e-2155.91Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P1_SALTY7.551e-2147.37Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_SALTI7.551e-2147.37Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_ESCF31.288e-2047.37Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P_LACDT1.682e-2055.91Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P1_SYNY32.197e-2044.26Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Syne... [more]
G3P1_SHIFL2.197e-2047.37Glyceraldehyde-3-phosphate dehydrogenase A OS=Shig... [more]
G3P1_ECOLI2.197e-2047.37Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionC32001B08EF DevOvary1 Citrus clementina cDNA clone C32001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876172 ID=FC876172; Name=FC876172; organism=Citrus clementina; type=EST; length=740bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACATGAAGGGGTG
GTGCAAAAGGTGGGTATATCAGCTCCATCAGCTGATGCAC
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