FC876172

Overview
NameFC876172
Unique NameFC876172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_CLOPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Clostridium pasteurianum GN=gap PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.056e-18
Identity = 51/121 (42.15%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  364 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            TKV INGFGRIGRL                ND   DAK +A++FKYDS+ G F G I V + + + +NGK +KVF++ DP ++PWG+ G+D V+E +G F            GAK   IS+
Sbjct:    2 TKVAINGFGRIGRLALRRILEVPGLEVVAIND-LTDAKMLAHLFKYDSSQGRFNGEIEVKEGAFV-VNGKEVKVFAEADPEKLPWGELGIDVVLECTGFFTKKEKAEAHVRAGAKKVVISA 120          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PT_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Mus musculus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.056e-18
Identity = 53/127 (41.73%), Postives = 66/127 (51.97%), Query Frame = 1
Query:  328 PPTIQKSRSDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            PP +QK   +    VGINGFGRIGRL                NDPFID +YM YMFKYDSTHG +KG +    +  L ++   I  +  +DP EIPW   G  YVVE +GV+            GA+
Sbjct:   98 PPPLQKPARE--LTVGINGFGRIGRLVLRVCMEKGIRVVAV-NDPFIDPEYMVYMFKYDSTHGRYKGNVE-HKNGQLVVDNLEINTYQCKDPKEIPWSSIGNPYVVECTGVYLSIEAASAHISSGAR 220          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_BACCE (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus cereus GN=gap1 PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.056e-18
Identity = 49/121 (40.50%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  364 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            TK+GINGFGRIGR                 ND   DAK +A++ KYD+ HG     ++  +++++ +NGK IKV ++RDPA++PW DYGV+ VVES+G F           G  K   IS+
Sbjct:    2 TKIGINGFGRIGRNVFRAALNNSEVEVVAIND-LTDAKTLAHLLKYDTVHGTLNAEVSA-NENSIVVNGKEIKVIAERDPAQLPWSDYGVEVVVESTGRFTKKSDAEKHLGGSVKKVIISA 120          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Phytophthora infestans GN=GPDA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.738e-18
Identity = 44/98 (44.90%), Postives = 60/98 (61.22%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            V INGFGRIGRL                NDPF+   YM YM +YD+ HG F G+++  D++ + +NGK I+VF++ +P  I WG+  V YVVES+G F
Sbjct:    3 VAINGFGRIGRLVLRASAKNPLINIVAINDPFVSTTYMEYMLEYDTVHGKFDGSLSH-DETHIFVNGKPIRVFNEMNPENIKWGEEQVQYVVESTGAF 99          

HSP 2 Score: 22.3274 bits (46), Expect = 2.738e-18
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 2
Query:  701 VQKVGISAPSADA 739
            V+KV ISAPS+DA
Sbjct:  113 VEKVVISAPSSDA 125          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_CLOAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Clostridium acetobutylicum GN=gap PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.508e-18
Identity = 50/120 (41.67%), Postives = 68/120 (56.67%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            K+ INGFGRIGRL                ND   DAK +A++FKYDS+ G F G I V + + + +NGK +KVF++ DP ++PWGD G+D V+E +G F            GAK   IS+
Sbjct:    3 KIAINGFGRIGRLALRRILEVPGLEVVAIND-LTDAKMLAHLFKYDSSQGRFNGEIEVKEGAFV-VNGKEVKVFAEADPEKLPWGDLGIDVVLECTGFFTKKEKAEAHVRAGAKKVVISA 120          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PT_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Homo sapiens GN=GAPDHS PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.581e-18
Identity = 56/139 (40.29%), Postives = 73/139 (52.52%), Query Frame = 1
Query:  316 ATEIPPTIQKSRSDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            AT  P  +  +R      VGINGFGRIGRL                NDPFID +YM YMFKYDSTHG +KG++    +  L ++   I V+  ++P +IPW   G  YVVES+GV+            GA+   IS+ S
Sbjct:   63 ATPPPKMVSVARE---LTVGINGFGRIGRLVLRACMEKGVKVVAV-NDPFIDPEYMVYMFKYDSTHGRYKGSVE-FRNGQLVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPS 196          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PT_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Bos taurus GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.983e-18
Identity = 51/122 (41.80%), Postives = 64/122 (52.46%), Query Frame = 1
Query:  298 QPIRATATEIPPTIQKSRSDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            +PI+      PP     +      VGINGFGRIGRL                NDPFID +YM YMFKYDSTHG +KG +       L ++   I VF  + P EIPW   G  +VVE++GV+
Sbjct:   41 EPIKEEVPPPPPPPPAPKKVRELIVGINGFGRIGRLVLRACMEKGVKVVAV-NDPFIDLEYMVYMFKYDSTHGRYKGNVE-HKKGQLVVDNNEISVFQCKQPKEIPWKSVGSPFVVEATGVY 160          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap1 PE=3 SV=4)

HSP 1 Score: 89.7373 bits (221), Expect = 1.741e-17
Identity = 51/120 (42.50%), Postives = 63/120 (52.50%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            KVGINGFGRIGRL                ND  +    +AY+ KYDSTHG  +  +   DD  + I+G  I   S R+PAE+PWG  G DYVVES+G+F            GAK   IS+
Sbjct:    5 KVGINGFGRIGRLVLRAGINNPNIEFVGIND-LVPPDNLAYLLKYDSTHGKLRSQVEAKDDGIV-IDGHFIPCVSVRNPAELPWGKLGADYVVESTGLFTDSEGASKHLQAGAKRVIISA 122          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PG_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 3.878e-17
Identity = 52/132 (39.39%), Postives = 72/132 (54.55%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXN----DPFIDAKYMAYMFKYDSTHGVFKGTIN-------VVDDSTLEING-KLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            KVGINGFGRIGR+                     D   DA+Y AY  KYDS HG FK +++       V  D TL +NG +++ V ++R+PA++PWG  GV+YV+ES+G+F           GGA+   IS+
Sbjct:    4 KVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHSVSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEGHLRGGARKVVISA 135          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_BACME (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus megaterium GN=gap PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.065e-17
Identity = 50/120 (41.67%), Postives = 65/120 (54.17%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            K+GINGFGRIGR                 ND   DA  +A++ KYDS HG     + VVD S L +NGK I++ ++RDPA++ WG  GV+ VVES+G F            GAK   IS+
Sbjct:    4 KIGINGFGRIGRNVFRAALKNDNVEVVAIND-LTDANMLAHLLKYDSVHGKLDAEV-VVDGSNLVVNGKTIEISAERDPAQLSWGKQGVEIVVESTGFFTKRADAAKHLEAGAKKVIISA 121          
The following BLAST results are available for this feature:
BLAST of FC876172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
G3P_CLOPA2.056e-1842.15Glyceraldehyde-3-phosphate dehydrogenase OS=Clostr... [more]
G3PT_MOUSE2.056e-1841.73Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P1_BACCE2.056e-1840.50Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P_PHYIN2.738e-1844.90Glyceraldehyde-3-phosphate dehydrogenase OS=Phytop... [more]
G3P_CLOAB3.508e-1841.67Glyceraldehyde-3-phosphate dehydrogenase OS=Clostr... [more]
G3PT_HUMAN4.581e-1840.29Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PT_BOVIN5.983e-1841.80Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P1_ANAVT1.741e-1742.50Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3PG_TRYBB3.878e-1739.39Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P_BACME5.065e-1741.67Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]

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Properties
Property NameValue
Genbank descriptionC32001B08EF DevOvary1 Citrus clementina cDNA clone C32001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876172 ID=FC876172; Name=FC876172; organism=Citrus clementina; type=EST; length=740bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACATGAAGGGGTG
GTGCAAAAGGTGGGTATATCAGCTCCATCAGCTGATGCAC
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