FC876179

Overview
NameFC876179
Unique NameFC876179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA1_LISMC (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.179e-51
Identity = 98/159 (61.64%), Postives = 121/159 (76.10%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            SE+AF  AK+++PGGVNSPVRAF SV   P+  D  KG+++ D+DGNEYIDYV SWGP I+GHAD  V+ A+ +   KGTSFG P  +E  LA++VI  VPSIE+VR V+SGTEA M  +RLAR +T RE+I +FEG YHGH D  L+KAGSGVATLGL
Sbjct:    7 SEKAFKEAKKVLPGGVNSPVRAFNSVDASPVFMDHGKGAYITDVDGNEYIDYVLSWGPLILGHADPAVVNAITKAALKGTSFGTPTEIETELAKLVIERVPSIEIVRMVSSGTEATMSAIRLARGYTKREKILKFEGSYHGHGDSLLIKAGSGVATLGL 165          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_DESRM (Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulfotomaculum reducens (strain MI-1) GN=hemL PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.846e-51
Identity = 96/161 (59.63%), Postives = 118/161 (73.29%), Query Frame = 2
Query:  215 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            + SEE F  A+ ++PGGVNSPVRAFKSVG  P       GS MWD+DGNEYIDY+ SWGP I+GH    V+ AL + ++KGT++GAP  LE  LA+M+  A+PS+EMVR VNSGTEA M  LRLARA+T R +I +FEGCYHGH D  L+KAGSG  T G+
Sbjct:    6 QKSEEMFEQAQRIIPGGVNSPVRAFKSVGMNPPFIARANGSRMWDVDGNEYIDYICSWGPQILGHRHPAVIHALQDCLEKGTTYGAPTDLEVTLAQMLTEALPSVEMVRMVNSGTEATMSALRLARAYTNRSKIIKFEGCYHGHHDSLLIKAGSGALTHGV 166          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA2_BACSK (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Bacillus clausii (strain KSM-K16) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.846e-51
Identity = 102/159 (64.15%), Postives = 119/159 (74.84%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S EAF  A+ LMPGGVNSPVRAFKSVG  P+     KG+ + DIDGNEYIDYV SWGP I+GHA+D V+  L +  + GTSFGAP   E  LA++VI  VPSI++VR VNSGTEA M  LRLAR +TGR +I +F GCYHGH D  L+KAGSGVATLGL
Sbjct:    7 SIEAFKEAQPLMPGGVNSPVRAFKSVGMNPVYMKEGKGAKIKDIDGNEYIDYVLSWGPLILGHANDVVVEELKKATELGTSFGAPHEYETRLAKLVIERVPSIDVVRMVNSGTEATMSALRLARGYTGRNKILKFVGCYHGHGDSLLIKAGSGVATLGL 165          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA2_LISMH (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.716e-51
Identity = 98/159 (61.64%), Postives = 120/159 (75.47%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            SE+AF  AK+++PGGVNSPVRAF SV   P+  D  KG+++ DIDGNEYIDYV SWGP I+GHA+  V+ A+     KGTSFG P  +E  LA++VI  VPSIE+VR V+SGTEA M  +RLAR +T RE+I +FEG YHGH D  L+KAGSGVATLGL
Sbjct:    7 SEKAFKEAKKVLPGGVNSPVRAFNSVDASPVFMDHGKGAYITDIDGNEYIDYVLSWGPLILGHANPSVVQAITNAAMKGTSFGTPTEIETELAKLVIERVPSIEIVRMVSSGTEATMSAIRLARGYTKREKILKFEGSYHGHGDSLLIKAGSGVATLGL 165          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA1_LISW6 (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.854e-51
Identity = 98/159 (61.64%), Postives = 121/159 (76.10%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            SE+AF  AK+++PGGVNSPVRAF SV   P+  D  KG+++ DIDGNEYIDYV SWGP I+GHA+  V+ A+ +   KGTSFG P  +E  LA++VI  VPSIE+VR V+SGTEA M  +RLAR +T RE+I +FEG YHGH D  L+KAGSGVATLGL
Sbjct:    7 SEKAFKEAKKVLPGGVNSPVRAFNSVDATPVFMDHGKGAYITDIDGNEYIDYVLSWGPLILGHANPSVVDAITKAAMKGTSFGTPTEIETELAKLVIERVPSIEIVRMVSSGTEATMSAIRLARGYTKREKILKFEGSYHGHGDSLLIKAGSGVATLGL 165          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_THICR (Glutamate-1-semialdehyde 2,1-aminomutase OS=Thiomicrospira crunogena (strain XCL-2) GN=hemL PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.339e-51
Identity = 92/162 (56.79%), Postives = 119/162 (73.46%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            + NS   F  A+  +PGGVNSPVRAFK VGG P+ F+S KG+++ D DG +YIDYV SWGPAI+GH    V+ A+    +KG SFGAP  +E  +A+MV   +PS++MVR V+SGTEA M  +RLAR +TGR++I +FEGCYHGH+D  LVKAGSG  TLG+
Sbjct:    1 MSNSHTLFEAAQAHIPGGVNSPVRAFKGVGGDPVFFESAKGAYLTDADGKQYIDYVASWGPAILGHTHPDVIKAVQTQAEKGLSFGAPTEIETTMADMVCDLIPSMDMVRMVSSGTEATMTAIRLARGYTGRDKIVKFEGCYHGHSDSLLVKAGSGALTLGV 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_STRM5 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Stenotrophomonas maltophilia (strain R551-3) GN=hemL PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.339e-51
Identity = 94/159 (59.12%), Postives = 116/159 (72.96%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S   F+ A++L+PGGVNSPVRAFKSVGG+P   +   G++++D+DGN YIDYVGSWGP I+GH    V  A+ + +  G SFGAPC  E  +AE +   VPS EMVR VNSGTEA +  +RLAR  TGR RI +FEGCYHGH D FLVKAGSG+ TLG+
Sbjct:    6 SHALFSRAQQLLPGGVNSPVRAFKSVGGEPFFVERADGAYLYDVDGNRYIDYVGSWGPMIVGHNHTAVRQAVKKAIDNGLSFGAPCAAEVTMAETITRLVPSCEMVRMVNSGTEATLSAIRLARGATGRNRIVKFEGCYHGHGDSFLVKAGSGMLTLGV 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_DESAP (Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulforudis audaxviator (strain MP104C) GN=hemL PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.339e-51
Identity = 99/159 (62.26%), Postives = 121/159 (76.10%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S + F  A++ MPGGVNSPVRAFK+VGG PI F   +G+ ++D+DGN YIDYV SWGP I+GHA   V+ A+ E  + GTSFGAP  LE  LA +++ A+PS+EMVR VNSGTEA M  LRLARA+T RE+I +FEGCYHGHAD  LVKAGSG  TLG+
Sbjct:    8 SAQMFAEAQKYMPGGVNSPVRAFKAVGGDPIFFLRGEGALLFDVDGNRYIDYVASWGPLILGHAHPLVVRAVKECAEFGTSFGAPNELEIELARLLVEALPSVEMVRLVNSGTEATMSALRLARAYTKREKIVKFEGCYHGHADALLVKAGSGALTLGV 166          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA1_LISMO (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Listeria monocytogenes GN=hemL1 PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.339e-51
Identity = 97/159 (61.01%), Postives = 120/159 (75.47%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            SE+AF  AK+++PGGVNSPVRAF SV   P+  D  KG+++ D+DGNEYIDYV SWGP I+GH D  V+ A+ +   KGTSFG P  +E  LA++VI  VPSIE+VR V+SGTEA M  +RLAR +T RE+I +FEG YHGH D  L+KAGSGVATLGL
Sbjct:    7 SEKAFKEAKKVLPGGVNSPVRAFNSVDASPVFMDHGKGAYITDVDGNEYIDYVLSWGPLILGHTDPAVVNAITKAALKGTSFGTPTEIETELAKLVIERVPSIEIVRMVSSGTEATMSAIRLARGYTKREKILKFEGSYHGHGDSLLIKAGSGVATLGL 165          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_FRAP2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=hemL PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.279e-51
Identity = 95/160 (59.38%), Postives = 120/160 (75.00%), Query Frame = 2
Query:  218 NSEEAFNVAKELMPGGVNSPVRAFKSVGGQ-PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            NS+  F  A + +PGGVNSPVRAFKSVG + P    S KG++++D+D N+YIDY+GSWGP I+GH DD VL A+   +K G S+GAPC  E  LA+ ++  +P+IE VRFVNSGTEA M  +RLARA+TGR +I +FEGCYHGHAD FLV AGSG  +LG
Sbjct:    6 NSQSLFQEALQYIPGGVNSPVRAFKSVGQEFPRFIKSAKGAYLYDVDWNKYIDYIGSWGPMILGHGDDDVLEAIQCQLKNGLSYGAPCKQEIELAKKIVELMPNIEQVRFVNSGTEATMSAIRLARAYTGRNKIIKFEGCYHGHADEFLVAAGSGALSLG 165          
The following BLAST results are available for this feature:
BLAST of FC876179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA1_LISMC2.179e-5161.64Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=List... [more]
GSA_DESRM2.846e-5159.63Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulf... [more]
GSA2_BACSK2.846e-5164.15Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Baci... [more]
GSA2_LISMH3.716e-5161.64Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=List... [more]
GSA1_LISW64.854e-5161.64Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=List... [more]
GSA_THICR6.339e-5156.79Glutamate-1-semialdehyde 2,1-aminomutase OS=Thiomi... [more]
GSA_STRM56.339e-5159.12Glutamate-1-semialdehyde 2,1-aminomutase OS=Stenot... [more]
GSA_DESAP6.339e-5162.26Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulf... [more]
GSA1_LISMO6.339e-5161.01Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=List... [more]
GSA_FRAP28.279e-5159.38Glutamate-1-semialdehyde 2,1-aminomutase OS=Franci... [more]

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Properties
Property NameValue
Genbank descriptionC32001C05EF DevOvary1 Citrus clementina cDNA clone C32001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876179 ID=FC876179; Name=FC876179; organism=Citrus clementina; type=EST; length=698bp
GACAGTTTCTTATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAG
AGAGTGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTA
GGGCTTTCATGTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGG
ATCCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGA
AAAATTTCACTTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAA
TTGATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGG
TGGTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATA
TCGATGGCAACGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATT
ATTGGTCACGCAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAA
GAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAG
AAATGGTAATCTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAAC
TCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCAC
TGGGAGAGAGAGGATCATNCAATTTGAGGGTTGTTATCATGGCCATGCTG
ATCCATTTCTTGTCAAGGCTGGTAGTGGAGTTGCCACCCTAGGGCTTC
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