FC876179

Overview
NameFC876179
Unique NameFC876179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CHLPB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Chlorobium phaeobacteroides (strain BS1) GN=hemL PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.081e-50
Identity = 97/162 (59.88%), Postives = 119/162 (73.46%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-GTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            L  S E F  AK+ +PGGVNSPVRAFKSVGG PI     +G++M D+DGN Y+DYVGSWGP I+G    ++ AA+  T+ K GTSFG P  +E  +AE++   VPSIEMVR VNSGTEA M  +RLAR +TGR++I +FEGCYHGH D FL+KAGSG  TLG
Sbjct:    4 LTRSAELFEKAKQFIPGGVNSPVRAFKSVGGTPIFMAKGQGAYMTDVDGNTYLDYVGSWGPFILGSMHPRITAAIENTLTKIGTSFGTPIEMEIEIAELLTQIVPSIEMVRMVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHGDSFLIKAGSGALTLG 165          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA2_LYSSC (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Lysinibacillus sphaericus (strain C3-41) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.081e-50
Identity = 97/161 (60.25%), Postives = 122/161 (75.78%), Query Frame = 2
Query:  215 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            + S++A+  A +LMPGGVNSPVRAFKSV   PI  +S  G+ + DIDGNEYIDYV SWGP I+GH   +V+ A+ ET  KG+SFGAP   EN LA++V+  +P +EM+RFV+SGTEA M  LR+AR  TGR++I +FEG YHGH D  L+KAGSGVATLGL
Sbjct:    6 EKSKQAYAEAVQLMPGGVNSPVRAFKSVNMDPIFMESGHGAIIKDIDGNEYIDYVLSWGPLILGHTHPEVVKAIAETAAKGSSFGAPTYTENRLAQLVLDRLPGMEMIRFVSSGTEATMSALRVARGVTGRDKILKFEGSYHGHGDSLLIKAGSGVATLGL 166          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_STRMK (Glutamate-1-semialdehyde 2,1-aminomutase OS=Stenotrophomonas maltophilia (strain K279a) GN=hemL PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.412e-50
Identity = 94/159 (59.12%), Postives = 116/159 (72.96%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S   F+ A++L+PGGVNSPVRAFKSVGG+P   +   G++++D+DGN YIDYVGSWGP I+GH    V  A+ + +  G SFGAPC  E  +AE +   VPS EMVR VNSGTEA +  +RLAR  TGR RI +FEGCYHGH D FLVKAGSG+ TLG+
Sbjct:    6 SHALFSRAQQLLPGGVNSPVRAFKSVGGEPFFVERADGAYLYDVDGNRYIDYVGSWGPMIVGHNHPAVRQAVKKAIDNGLSFGAPCAGEVTMAETITRLVPSCEMVRMVNSGTEATLSAIRLARGATGRNRIVKFEGCYHGHGDSFLVKAGSGMLTLGV 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_HAHCH (Glutamate-1-semialdehyde 2,1-aminomutase OS=Hahella chejuensis (strain KCTC 2396) GN=hemL PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.412e-50
Identity = 96/159 (60.38%), Postives = 116/159 (72.96%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            SEE F+ A++ +PGGVNSPVRAF+ VGG P+ F   +G++++D DG  YIDYVGSWGP I+GHA   V  AL   +  G  FGAP  +E  +AE V   VPSIEMVR VNSGTEA M  +RLAR FTGR++I +FEGCYHGHAD  LVKAGSG  TLG+
Sbjct:    4 SEELFSRAQQHIPGGVNSPVRAFRGVGGAPVFFSKGEGAYLYDEDGKRYIDYVGSWGPMILGHAHPDVRQALERQLANGLGFGAPTRIEIDMAEKVCELVPSIEMVRMVNSGTEATMSAIRLARGFTGRDKIVKFEGCYHGHADSLLVKAGSGALTLGI 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_GRAFK (Glutamate-1-semialdehyde 2,1-aminomutase OS=Gramella forsetii (strain KT0803) GN=hemL PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.412e-50
Identity = 89/160 (55.62%), Postives = 121/160 (75.62%), Query Frame = 2
Query:  215 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            K S + F  A++++PGGVNSPVRAFK+VGG+PI  +  +G++++D DGN+ IDY+ SWGP I+GHA   V+ A+ E  KKGTSFG P  +E  +AE+ +  VP+I+ +R VNSGTEACM  +RLAR FTG+E+I +F GCYHGH+D FL++AGSG  T G
Sbjct:    4 KRSSQLFADAQKVIPGGVNSPVRAFKAVGGEPIFIEKAEGAYIYDEDGNKLIDYINSWGPLILGHAHKPVIDAVIEKAKKGTSFGTPTEIETKIAELAVKMVPNIDKIRMVNSGTEACMSAVRLARGFTGKEKIIKFAGCYHGHSDSFLIQAGSGAVTFG 163          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_TERTT (Glutamate-1-semialdehyde 2,1-aminomutase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=hemL PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.844e-50
Identity = 90/162 (55.56%), Postives = 120/162 (74.07%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            + N  E F  A++ +PGGVNSPVRAFK+VGG+P+  D  KG++++DI G  Y+DYV SWGP ++GH DD VL A+   + KG SFGAP  +E  LAE + + +P ++ VRFVNSGTEA M  +RLAR +TGR++I +FEGCYHGH+D  L+KAGSG  TLG+
Sbjct:    1 MSNFSEVFARAQKTIPGGVNSPVRAFKAVGGEPVFIDHAKGAYVYDIHGKRYVDYVLSWGPMLLGHGDDDVLDAVRAKLDKGLSFGAPTEIETELAEKICNIMPGMDKVRFVNSGTEATMSAIRLARGYTGRDKIVKFEGCYHGHSDSLLIKAGSGALTLGV 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CHLL2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=hemL PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.844e-50
Identity = 97/162 (59.88%), Postives = 121/162 (74.69%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-GTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            L  S E F +AK+ +PGGVNSPVRAFKSVGG PI     +G++M D+DGN Y+DYVGSWGP I+G    +V AA+  T++  G+SFG P  +E  +AE++   VPSIEMVR VNSGTEA M  +RLAR +TGR++I +FEGCYHGH D FL+KAGSGV TLG
Sbjct:    4 LTKSAELFELAKKFIPGGVNSPVRAFKSVGGTPIYMAKGEGAYMTDVDGNTYLDYVGSWGPFILGSMQPRVTAAIEYTLRNIGSSFGTPIEMEIEIAELLSRIVPSIEMVRMVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHGDSFLIKAGSGVLTLG 165          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_GEOLS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=hemL PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.409e-50
Identity = 96/163 (58.90%), Postives = 119/163 (73.01%), Query Frame = 2
Query:  209 TLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            T   S   F+ A+ ++PGGVNSPVRAFKSVG  P+      GS ++D D N YIDYVGSWGP I+GH   +V+ A+ + M+ G+SFGAP  LE  LA+MVI A+PSIEMVR V+SGTEA M  +RLAR +TGR++I +F GCYHGHAD  LVKAGSG AT G+
Sbjct:    2 THTRSHTLFDQARRIIPGGVNSPVRAFKSVGADPLFIKRASGSKIFDEDNNTYIDYVGSWGPMILGHCFPEVVNAVKQCMENGSSFGAPTELEITLAQMVIDAMPSIEMVRMVSSGTEATMSAIRLARGYTGRDKILKFSGCYHGHADALLVKAGSGAATFGV 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CHLTE (Glutamate-1-semialdehyde 2,1-aminomutase OS=Chlorobium tepidum GN=hemL PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.409e-50
Identity = 97/162 (59.88%), Postives = 120/162 (74.07%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-GTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            L  S E F  AK+ +PGGVNSPVRAFKSVGG PI     +G++M D+DGN Y+DYVGSWGP I+G    +V AA+  T++  GTSFG P  LE  +AE++   VPS+EMVR VNSGTEA M  +RLAR +TG+++I +FEGCYHGH D FL+KAGSGV TLG
Sbjct:    4 LTRSAELFEKAKKFIPGGVNSPVRAFKSVGGTPIYMAKGQGAYMTDVDGNTYLDYVGSWGPFILGSMHPRVTAAIEYTLRNIGTSFGTPIELEIEIAELLCKIVPSLEMVRMVNSGTEATMSAVRLARGYTGKDKIIKFEGCYHGHGDSFLIKAGSGVLTLG 165          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PROA2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=hemL PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.146e-50
Identity = 97/162 (59.88%), Postives = 118/162 (72.84%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-GTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            L  S E F  AK+ +PGGVNSPVRAFKSVGG PI     +G++M D+DGN Y+DYVGSWGP I+G    ++ AAL  T+ K GTSFG P  +E  +AE++   VPSIEMVR VNSGTEA M  +RLAR +T R++I +FEGCYHGH D FL+KAGSG  TLG
Sbjct:    4 LTRSAELFEKAKQFIPGGVNSPVRAFKSVGGTPIYMAKGQGAYMTDVDGNTYLDYVGSWGPFILGSMHPRITAALEHTLTKIGTSFGTPIEMEIEIAELLCQIVPSIEMVRMVNSGTEATMSAVRLARGYTSRDKIIKFEGCYHGHGDSFLIKAGSGALTLG 165          
The following BLAST results are available for this feature:
BLAST of FC876179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_CHLPB1.081e-5059.88Glutamate-1-semialdehyde 2,1-aminomutase OS=Chloro... [more]
GSA2_LYSSC1.081e-5060.25Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Lysi... [more]
GSA_STRMK1.412e-5059.12Glutamate-1-semialdehyde 2,1-aminomutase OS=Stenot... [more]
GSA_HAHCH1.412e-5060.38Glutamate-1-semialdehyde 2,1-aminomutase OS=Hahell... [more]
GSA_GRAFK1.412e-5055.63Glutamate-1-semialdehyde 2,1-aminomutase OS=Gramel... [more]
GSA_TERTT1.844e-5055.56Glutamate-1-semialdehyde 2,1-aminomutase OS=Teredi... [more]
GSA_CHLL21.844e-5059.88Glutamate-1-semialdehyde 2,1-aminomutase OS=Chloro... [more]
GSA_GEOLS2.409e-5058.90Glutamate-1-semialdehyde 2,1-aminomutase OS=Geobac... [more]
GSA_CHLTE2.409e-5059.88Glutamate-1-semialdehyde 2,1-aminomutase OS=Chloro... [more]
GSA_PROA23.146e-5059.88Glutamate-1-semialdehyde 2,1-aminomutase OS=Prosth... [more]

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Properties
Property NameValue
Genbank descriptionC32001C05EF DevOvary1 Citrus clementina cDNA clone C32001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876179 ID=FC876179; Name=FC876179; organism=Citrus clementina; type=EST; length=698bp
GACAGTTTCTTATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAG
AGAGTGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTA
GGGCTTTCATGTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGG
ATCCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGA
AAAATTTCACTTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAA
TTGATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGG
TGGTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATA
TCGATGGCAACGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATT
ATTGGTCACGCAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAA
GAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAG
AAATGGTAATCTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAAC
TCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCAC
TGGGAGAGAGAGGATCATNCAATTTGAGGGTTGTTATCATGGCCATGCTG
ATCCATTTCTTGTCAAGGCTGGTAGTGGAGTTGCCACCCTAGGGCTTC
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