FC876179

Overview
NameFC876179
Unique NameFC876179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PELPB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=hemL PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.146e-50
Identity = 96/162 (59.26%), Postives = 118/162 (72.84%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-GTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            L  S E F  AK+ +PGGVNSPVRAFKSVGG P+      G++M D+DGN Y+DYVGSWGP I+G    ++ AAL  T+K  GTSFG P  +E  +AE++   VPS+EMVR VNSGTEA M  +RLAR +TGR++I +FEGCYHGH D FL+KAGSG  TLG
Sbjct:    4 LTKSAELFEKAKKFIPGGVNSPVRAFKSVGGTPVYMAKGSGAYMTDVDGNTYLDYVGSWGPFILGSMHPRITAALEYTLKNIGTSFGTPIEMEIEIAELLCKIVPSLEMVRMVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHGDSFLIKAGSGALTLG 165          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PROVI (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=hemL PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.109e-50
Identity = 97/162 (59.88%), Postives = 118/162 (72.84%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-GTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            L  S E F  AK+ +PGGVNSPVRAFKSVGG PI     +G++M D+DGN Y+DYVGSWGP I+G    ++ AAL  T+   GTSFG P  +E  +AE+++  VPSIEMVR VNSGTEA M  +RLAR  TGR++I +FEGCYHGH D FL+KAGSG  TLG
Sbjct:    4 LTRSAELFEKAKKFIPGGVNSPVRAFKSVGGNPIFMAKGQGAYMTDVDGNTYLDYVGSWGPFILGSMHPRITAALERTLTTIGTSFGTPIEMEIEIAELLVEIVPSIEMVRMVNSGTEATMSAVRLARGCTGRDKIIKFEGCYHGHGDSFLIKAGSGALTLG 165          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PELLD (Glutamate-1-semialdehyde 2,1-aminomutase OS=Pelodictyon luteolum (strain DSM 273) GN=hemL PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.109e-50
Identity = 98/163 (60.12%), Postives = 118/163 (72.39%), Query Frame = 2
Query:  209 TLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-GTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            T   S E F  AK+ +PGGVNSPVRAFKSVGG PI     +G++M D+DGN Y+DYVGSWGP I+G    ++ AAL  T+ K GTSFG P  +E  +AE++   VPSIEMVR VNSGTEA M  +RLAR  TGR++I +FEGCYHGH D FL+KAGSG  TLG
Sbjct:    3 THTRSAELFEKAKKFIPGGVNSPVRAFKSVGGNPIFMAKGQGAYMTDVDGNTYLDYVGSWGPFILGSMHPRITAALEHTLTKIGTSFGTPIEMEIEIAELLTKIVPSIEMVRMVNSGTEATMSAVRLARGCTGRDKIIKFEGCYHGHGDSFLIKAGSGALTLG 165          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_GEOSL (Glutamate-1-semialdehyde 2,1-aminomutase OS=Geobacter sulfurreducens GN=hemL PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.109e-50
Identity = 96/159 (60.38%), Postives = 115/159 (72.33%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S++ F  A+E +PGGVNSPVRAFKSVG  P+      G  + D D N YIDYVGSWGP I+GH   QV+ A+   ++ G+SFGAP  LE  LA MVI AVPSIEMVR V+SGTEA M  +RLAR +TGR++I +F GCYHGHAD  LVKAGSG AT G+
Sbjct:    6 SKDLFTQAQEFIPGGVNSPVRAFKSVGADPLFIKKAFGCTITDADNNSYIDYVGSWGPMILGHCHPQVVEAVKRAVESGSSFGAPTELEITLARMVIDAVPSIEMVRMVSSGTEATMSAIRLARGYTGRDKIIKFSGCYHGHADALLVKAGSGAATFGV 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CHLPD (Glutamate-1-semialdehyde 2,1-aminomutase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=hemL PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.109e-50
Identity = 95/159 (59.75%), Postives = 118/159 (74.21%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-GTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            S E F  AK+ +PGGVNSPVRAFKSVGG PI     +G+++ D+DGN Y+DYVGSWGP I+G    ++ AAL  T+K  GTSFG P  +E  +AE++   VPS+EMVR VNSGTEA M  +RLAR +TGR++I +FEGCYHGH D FL+KAGSG  TLG
Sbjct:    7 SAELFEKAKQFIPGGVNSPVRAFKSVGGTPIYMAKGRGAYLTDVDGNSYLDYVGSWGPFILGSMHPRITAALEYTLKNIGTSFGTPIEMEIEIAELLCKIVPSLEMVRMVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHGDSFLIKAGSGALTLG 165          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_XANCP (Glutamate-1-semialdehyde 2,1-aminomutase OS=Xanthomonas campestris pv. campestris GN=hemL PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.367e-50
Identity = 95/159 (59.75%), Postives = 113/159 (71.07%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S   F+ A+ LMPGGVNSPVRAFKSVGG+P       G++++D+DGN YIDYVGSWGP I GH    V  A+   ++ G SFGAPC  E  +AE +   VPS EMVR VNSGTEA +  +RLAR  TGR RI +FEGCYHGH D FLVKAGSG+ TLG+
Sbjct:    6 SHALFSQAQNLMPGGVNSPVRAFKSVGGEPFFVARADGAYLFDVDGNRYIDYVGSWGPMIAGHNHPAVREAVERAIRDGLSFGAPCEAEVTMAETITRLVPSCEMVRMVNSGTEATLSAIRLARGATGRNRIVKFEGCYHGHGDSFLVKAGSGMLTLGV 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_XANCB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Xanthomonas campestris pv. campestris (strain B100) GN=hemL PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.367e-50
Identity = 95/159 (59.75%), Postives = 113/159 (71.07%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S   F+ A+ LMPGGVNSPVRAFKSVGG+P       G++++D+DGN YIDYVGSWGP I GH    V  A+   ++ G SFGAPC  E  +AE +   VPS EMVR VNSGTEA +  +RLAR  TGR RI +FEGCYHGH D FLVKAGSG+ TLG+
Sbjct:    6 SHALFSQAQNLMPGGVNSPVRAFKSVGGEPFFVARADGAYLFDVDGNRYIDYVGSWGPMIAGHNHPAVREAVERAIRDGLSFGAPCEAEVTMAETITRLVPSCEMVRMVNSGTEATLSAIRLARGATGRNRIVKFEGCYHGHGDSFLVKAGSGMLTLGV 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_XANC8 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=hemL PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.367e-50
Identity = 95/159 (59.75%), Postives = 113/159 (71.07%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S   F+ A+ LMPGGVNSPVRAFKSVGG+P       G++++D+DGN YIDYVGSWGP I GH    V  A+   ++ G SFGAPC  E  +AE +   VPS EMVR VNSGTEA +  +RLAR  TGR RI +FEGCYHGH D FLVKAGSG+ TLG+
Sbjct:    6 SHALFSQAQNLMPGGVNSPVRAFKSVGGEPFFVARADGAYLFDVDGNRYIDYVGSWGPMIAGHNHPAVREAVERAIRDGLSFGAPCEAEVTMAETITRLVPSCEMVRMVNSGTEATLSAIRLARGATGRNRIVKFEGCYHGHGDSFLVKAGSGMLTLGV 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SULSY (Glutamate-1-semialdehyde 2,1-aminomutase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=hemL PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.009e-50
Identity = 96/161 (59.63%), Postives = 118/161 (73.29%), Query Frame = 2
Query:  215 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            + S+E F  A++ + GGVNSPVRAFK+V   PI     KG  +WD+D NEYIDYV SWGP I+GHA DQV+ A+ +    GTSFGAP  LE  +A+ VI AV S+EMVRFVNSGTEA M  +RLAR +T R++I +F+GCYHGH D  LV AGSGVATLG+
Sbjct:    4 QKSKELFQEAQKYLVGGVNSPVRAFKAVEADPIFIKKGKGCRIWDVDDNEYIDYVLSWGPLILGHAHDQVINAIKQISNYGTSFGAPTELEVEMAKAVIDAVKSVEMVRFVNSGTEATMSAIRLARGYTKRKKIIKFDGCYHGHGDSLLVSAGSGVATLGI 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_ROSCS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=hemL PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.009e-50
Identity = 97/159 (61.01%), Postives = 118/159 (74.21%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            SE  F  A+ L PGGVNSPVRAF++VGG P      +G+ + D+DGN YIDYV SWGP I+GHA   V+AA+ E    GTSFGAP  LE+ LA ++  A+PS+EMVRFV+SGTEA M  LRLARA T R+++ +F GCYHGH D FLV+AGSGVATLGL
Sbjct:    6 SESLFAEARSLFPGGVNSPVRAFRAVGGAPRFIARGEGAFLVDVDGNRYIDYVLSWGPLILGHAHPNVVAAIAEQAAHGTSFGAPTELESELARLITQAMPSVEMVRFVSSGTEAAMSALRLARAATRRDKVIKFAGCYHGHFDGFLVQAGSGVATLGL 164          
The following BLAST results are available for this feature:
BLAST of FC876179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_PELPB3.146e-5059.26Glutamate-1-semialdehyde 2,1-aminomutase OS=Pelodi... [more]
GSA_PROVI4.109e-5059.88Glutamate-1-semialdehyde 2,1-aminomutase OS=Prosth... [more]
GSA_PELLD4.109e-5060.12Glutamate-1-semialdehyde 2,1-aminomutase OS=Pelodi... [more]
GSA_GEOSL4.109e-5060.38Glutamate-1-semialdehyde 2,1-aminomutase OS=Geobac... [more]
GSA_CHLPD4.109e-5059.75Glutamate-1-semialdehyde 2,1-aminomutase OS=Chloro... [more]
GSA_XANCP5.367e-5059.75Glutamate-1-semialdehyde 2,1-aminomutase OS=Xantho... [more]
GSA_XANCB5.367e-5059.75Glutamate-1-semialdehyde 2,1-aminomutase OS=Xantho... [more]
GSA_XANC85.367e-5059.75Glutamate-1-semialdehyde 2,1-aminomutase OS=Xantho... [more]
GSA_SULSY7.009e-5059.63Glutamate-1-semialdehyde 2,1-aminomutase OS=Sulfur... [more]
GSA_ROSCS7.009e-5061.01Glutamate-1-semialdehyde 2,1-aminomutase OS=Roseif... [more]

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Properties
Property NameValue
Genbank descriptionC32001C05EF DevOvary1 Citrus clementina cDNA clone C32001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876179 ID=FC876179; Name=FC876179; organism=Citrus clementina; type=EST; length=698bp
GACAGTTTCTTATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAG
AGAGTGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTA
GGGCTTTCATGTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGG
ATCCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGA
AAAATTTCACTTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAA
TTGATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGG
TGGTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATA
TCGATGGCAACGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATT
ATTGGTCACGCAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAA
GAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAG
AAATGGTAATCTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAAC
TCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCAC
TGGGAGAGAGAGGATCATNCAATTTGAGGGTTGTTATCATGGCCATGCTG
ATCCATTTCTTGTCAAGGCTGGTAGTGGAGTTGCCACCCTAGGGCTTC
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