FC876179

Overview
NameFC876179
Unique NameFC876179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_HALHL (Glutamate-1-semialdehyde 2,1-aminomutase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=hemL PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.009e-50
Identity = 91/162 (56.17%), Postives = 117/162 (72.22%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            ++ + + F  A+EL+PGGVNSPVRAFK VGG+PI F+  +G +MWD+DG  Y+DYV SWGP + GHAD +++  + ET  KG SFG P  LE  +A  +   VPS+EMVR VNSGTEA M  LRLAR FTGR++I +F+G YHGH D  L +AGSG  TLG+
Sbjct:    1 MQRTHQLFQQARELIPGGVNSPVRAFKGVGGEPIFFERGEGPYMWDVDGKRYVDYVCSWGPLVAGHADPEIVRRVQETAAKGLSFGTPVELEVEMARTLCQHVPSLEMVRLVNSGTEATMSALRLARGFTGRDKIVKFQGNYHGHVDALLAQAGSGALTLGV 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CHLCH (Glutamate-1-semialdehyde 2,1-aminomutase OS=Chlorobium chlorochromatii (strain CaD3) GN=hemL PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.009e-50
Identity = 96/162 (59.26%), Postives = 118/162 (72.84%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-GTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  S E F  AK+ +PGGVNSPVRAFKSVGG PI      G++M D+DGN Y+DYVGSWGP I+G    ++ AAL  T+K  GTSFG P  +E  +AE++   VPS+EMVR VNSGTEA M  +RLAR +TGR++I +FEGCYHGH D FL+KAGSG  TLG
Sbjct:    4 ITRSIELFEKAKKFIPGGVNSPVRAFKSVGGTPIYMAKGSGAYMTDVDGNTYLDYVGSWGPFILGSMHPRITAALEYTLKNIGTSFGTPIEMEIEIAELLCQIVPSLEMVRMVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHGDSFLIKAGSGALTLG 165          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_ALCBS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=hemL PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.009e-50
Identity = 92/159 (57.86%), Postives = 118/159 (74.21%), Query Frame = 2
Query:  215 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATL 691
            K+SE+ F  A++ +PGGVNSPVRAFKSVGG P+ F S +G+H++D D N+YIDYVGSWGP I+GH    V+AA+   +++G SFGAP   E  +A+ V   VPS++MVR VNSGTEA M  +RLAR +TGR +I +FEGCYHGH D  LVKAGSG   +
Sbjct:    4 KHSEQLFRQAQKHIPGGVNSPVRAFKSVGGTPVFFHSARGAHLFDEDDNKYIDYVGSWGPMILGHNHPHVVAAVQAAVEQGLSFGAPTATEVAMADKVCELVPSMDMVRMVNSGTEATMSAIRLARGYTGRNKIIKFEGCYHGHVDSLLVKAGSGAIAI 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_VESOH (Glutamate-1-semialdehyde 2,1-aminomutase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=hemL PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.154e-50
Identity = 91/162 (56.17%), Postives = 120/162 (74.07%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            +  SE  F  A+ ++ GGVNSPVRAF  VGG PI F   KG++++D+DGN+YIDYV SWGP I+GHA+ +V+ A+   ++ G SFGAP  +E +LAE V   +PSIE+VR V+SGTEA M  +RLAR +TGR++I +FEGCYHGH+D  LVKAGS   TLG+
Sbjct:    1 MNQSEVLFAQARTVISGGVNSPVRAFNGVGGNPIFFTRGKGAYLFDVDGNKYIDYVASWGPMILGHANQEVINAIKTNLENGLSFGAPTHIETMLAEKVCELIPSIELVRMVSSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHSDALLVKAGSAALTLGV 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SALTY (Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella typhimurium GN=hemL PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.154e-50
Identity = 90/161 (55.90%), Postives = 119/161 (73.91%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  ++ A+EL+PGGVNSPVRAF  VGG P+  +   G++++D+DG  YIDYVGSWGP ++GH    +  A+ E  ++G SFGAP  +E  +AE+V + VP+++MVR VNSGTEA M  +RLAR FTGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAELVTNLVPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SALTI (Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella typhi GN=hemL PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.154e-50
Identity = 90/161 (55.90%), Postives = 119/161 (73.91%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  ++ A+EL+PGGVNSPVRAF  VGG P+  +   G++++D+DG  YIDYVGSWGP ++GH    +  A+ E  ++G SFGAP  +E  +AE+V + VP+++MVR VNSGTEA M  +RLAR FTGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAELVTNLVPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SALSV (Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella schwarzengrund (strain CVM19633) GN=hemL PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.154e-50
Identity = 90/161 (55.90%), Postives = 119/161 (73.91%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  ++ A+EL+PGGVNSPVRAF  VGG P+  +   G++++D+DG  YIDYVGSWGP ++GH    +  A+ E  ++G SFGAP  +E  +AE+V + VP+++MVR VNSGTEA M  +RLAR FTGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAELVTNLVPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SALPK (Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella paratyphi A (strain AKU_12601) GN=hemL PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.154e-50
Identity = 90/161 (55.90%), Postives = 119/161 (73.91%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  ++ A+EL+PGGVNSPVRAF  VGG P+  +   G++++D+DG  YIDYVGSWGP ++GH    +  A+ E  ++G SFGAP  +E  +AE+V + VP+++MVR VNSGTEA M  +RLAR FTGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAELVTNLVPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SALPC (Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella paratyphi C (strain RKS4594) GN=hemL PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.154e-50
Identity = 90/161 (55.90%), Postives = 119/161 (73.91%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  ++ A+EL+PGGVNSPVRAF  VGG P+  +   G++++D+DG  YIDYVGSWGP ++GH    +  A+ E  ++G SFGAP  +E  +AE+V + VP+++MVR VNSGTEA M  +RLAR FTGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAELVTNLVPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SALPB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=hemL PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.154e-50
Identity = 90/161 (55.90%), Postives = 119/161 (73.91%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  ++ A+EL+PGGVNSPVRAF  VGG P+  +   G++++D+DG  YIDYVGSWGP ++GH    +  A+ E  ++G SFGAP  +E  +AE+V + VP+++MVR VNSGTEA M  +RLAR FTGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAELVTNLVPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLG 161          
The following BLAST results are available for this feature:
BLAST of FC876179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_HALHL7.009e-5056.17Glutamate-1-semialdehyde 2,1-aminomutase OS=Halorh... [more]
GSA_CHLCH7.009e-5059.26Glutamate-1-semialdehyde 2,1-aminomutase OS=Chloro... [more]
GSA_ALCBS7.009e-5057.86Glutamate-1-semialdehyde 2,1-aminomutase OS=Alcani... [more]
GSA_VESOH9.154e-5056.17Glutamate-1-semialdehyde 2,1-aminomutase OS=Vesico... [more]
GSA_SALTY9.154e-5055.90Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmon... [more]
GSA_SALTI9.154e-5055.90Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmon... [more]
GSA_SALSV9.154e-5055.90Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmon... [more]
GSA_SALPK9.154e-5055.90Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmon... [more]
GSA_SALPC9.154e-5055.90Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmon... [more]
GSA_SALPB9.154e-5055.90Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmon... [more]

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Properties
Property NameValue
Genbank descriptionC32001C05EF DevOvary1 Citrus clementina cDNA clone C32001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876179 ID=FC876179; Name=FC876179; organism=Citrus clementina; type=EST; length=698bp
GACAGTTTCTTATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAG
AGAGTGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTA
GGGCTTTCATGTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGG
ATCCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGA
AAAATTTCACTTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAA
TTGATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGG
TGGTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATA
TCGATGGCAACGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATT
ATTGGTCACGCAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAA
GAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAG
AAATGGTAATCTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAAC
TCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCAC
TGGGAGAGAGAGGATCATNCAATTTGAGGGTTGTTATCATGGCCATGCTG
ATCCATTTCTTGTCAAGGCTGGTAGTGGAGTTGCCACCCTAGGGCTTC
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