FC876179

Overview
NameFC876179
Unique NameFC876179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_BURA4 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Burkholderia ambifaria (strain MC40-6) GN=hemL PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.933e-49
Identity = 92/161 (57.14%), Postives = 114/161 (70.81%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            + N++  F  A++ +PGGVNSPVRAF+SVGG P      +G + WD DG +YIDY+GSWGP I+GH   +VL+A+ + +  G SFGAP   E  +AE +   VPSIE VR V+SGTEA M  LRLAR FTGR RI +FEGCYHGHAD  LVKAGSG+ T G
Sbjct:    1 MSNNQILFERAQKTIPGGVNSPVRAFRSVGGTPRFVSRAQGPYFWDADGKQYIDYIGSWGPMIVGHVHPEVLSAVQKVLADGFSFGAPTEAEIEIAEEICKLVPSIEQVRMVSSGTEATMSALRLARGFTGRSRIVKFEGCYHGHADSLLVKAGSGLLTFG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_ANASK (Glutamate-1-semialdehyde 2,1-aminomutase OS=Anaeromyxobacter sp. (strain K) GN=hemL PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.933e-49
Identity = 91/159 (57.23%), Postives = 117/159 (73.58%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S++ F  A +L PGGVNSPVRAFK VGG P      KGSH++D+DGN+Y+DYV SWGP I+GH   +V+  + + MK+G+SFGAP   E +LAE+V   +P +E +RFV+SGTEA    +R+AR FTGR+ I +F+GCYHG  DP LVKAGSGV TLGL
Sbjct:    6 SQKLFEKANDLFPGGVNSPVRAFKGVGGTPRFISRAKGSHIFDVDGNDYVDYVLSWGPMIVGHCHPEVMREVQDAMKEGSSFGAPSPREILLAELVRERMPWVEKMRFVSSGTEATTSAIRVARGFTGRDDIVKFDGCYHGAGDPLLVKAGSGVETLGL 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_ANAD2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=hemL PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.933e-49
Identity = 91/159 (57.23%), Postives = 117/159 (73.58%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S++ F  A +L PGGVNSPVRAFK VGG P      KGSH++D+DGN+Y+DYV SWGP I+GH   +V+  + + MK+G+SFGAP   E +LAE+V   +P +E +RFV+SGTEA    +R+AR FTGR+ I +F+GCYHG  DP LVKAGSGV TLGL
Sbjct:    6 SQKLFEKANDLFPGGVNSPVRAFKGVGGTPRFISRAKGSHIFDVDGNDYVDYVLSWGPMIVGHCHPEVMREVQDAMKEGSSFGAPSPREILLAELVRERMPWVEKMRFVSSGTEATTSAIRVARGFTGRDDIVKFDGCYHGAGDPLLVKAGSGVETLGL 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_THEYD (Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=hemL PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.749e-49
Identity = 94/159 (59.12%), Postives = 117/159 (73.58%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S++ +  A +LMPGGVNSPVRAFK+VGG P+     KGS ++D+DGNEYIDYV SWGP I+GHA   V+ AL + ++KGTS+GAP  LE  LA +V  A PSIE +RFVNSGTEA M  +R+AR FT R ++ +FEGCYHGH D  LV AGSG AT  +
Sbjct:    6 SKKLYKQALKLMPGGVNSPVRAFKAVGGNPLFIAKAKGSKIYDVDGNEYIDYVLSWGPLILGHAYPSVVKALKKAIEKGTSYGAPTELEIKLATLVKKAFPSIEKLRFVNSGTEATMSAIRVARGFTKRNKVIKFEGCYHGHVDGLLVSAGSGGATFSI 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SHEPW (Glutamate-1-semialdehyde 2,1-aminomutase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=hemL PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.749e-49
Identity = 93/161 (57.76%), Postives = 116/161 (72.05%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  S+E F  AK+ +PGGVNSPVRAF  VGG P   +   G++++D DG +YIDYVGSWGP I+GH   ++ AA+ E ++ G SFGAP  LE  +AE VI  VPS+E VR V+SGTEA M  +RLAR FT R++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MTRSDELFEQAKKTIPGGVNSPVRAFNGVGGSPRFIEKADGAYIFDADGKKYIDYVGSWGPMILGHNHPKIRAAVLEAVENGLSFGAPTELEVTMAEKVIEMVPSMEQVRMVSSGTEATMSAIRLARGFTSRDKILKFEGCYHGHADCLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SHEDO (Glutamate-1-semialdehyde 2,1-aminomutase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=hemL PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.749e-49
Identity = 92/161 (57.14%), Postives = 117/161 (72.67%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  F  AK+ +PGGVNSPVRAF  VGG P+  +   G++++D DGN+YIDYVGSWGP I+GH   ++  A+ + ++ G SFGAP  LE  +AE VI+ VPSIE VR V+SGTEA M  +RLAR +T R++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MNRSEALFEQAKKTIPGGVNSPVRAFNGVGGSPLFIEKADGAYIFDADGNKYIDYVGSWGPMILGHNHPKIRQAVLDAVENGLSFGAPTELEVKMAEKVIAMVPSIEQVRMVSSGTEATMSAIRLARGYTNRDKILKFEGCYHGHADCLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_BURTA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=hemL PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.749e-49
Identity = 93/161 (57.76%), Postives = 111/161 (68.94%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            + N++  F  A+  +PGGVNSPVRAF+SVGG P      +G++ WD DG  YIDY+GSWGP I+GH    VLAA+   +  G SFGAP   E  +AE +   VPSIE VR V+SGTEA M  LRLAR FTGR RI +FEGCYHGHAD  LVKAGSG+ T G
Sbjct:    1 MSNNQTLFERAQRTIPGGVNSPVRAFRSVGGTPRFVARAQGAYFWDADGKRYIDYIGSWGPMIVGHVHPDVLAAVQRVLADGFSFGAPTEAEIEIAEEICKLVPSIEQVRMVSSGTEATMSALRLARGFTGRSRIVKFEGCYHGHADSLLVKAGSGLLTFG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_BURPS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Burkholderia pseudomallei GN=hemL PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.749e-49
Identity = 93/161 (57.76%), Postives = 111/161 (68.94%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            + N++  F  A+  +PGGVNSPVRAF+SVGG P      +G++ WD DG  YIDY+GSWGP I+GH    VLAA+   +  G SFGAP   E  +AE +   VPSIE VR V+SGTEA M  LRLAR FTGR RI +FEGCYHGHAD  LVKAGSG+ T G
Sbjct:    1 MSNNQTLFERAQRTIPGGVNSPVRAFRSVGGTPRFVARAQGAYFWDADGKRYIDYIGSWGPMIVGHVHPDVLAAVQRVLADGFSFGAPTEAEIEIAEEICKLVPSIEQVRMVSSGTEATMSALRLARGFTGRSRIVKFEGCYHGHADSLLVKAGSGLLTFG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_BURP6 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Burkholderia pseudomallei (strain 668) GN=hemL PE=3 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 7.749e-49
Identity = 93/161 (57.76%), Postives = 111/161 (68.94%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            + N++  F  A+  +PGGVNSPVRAF+SVGG P      +G++ WD DG  YIDY+GSWGP I+GH    VLAA+   +  G SFGAP   E  +AE +   VPSIE VR V+SGTEA M  LRLAR FTGR RI +FEGCYHGHAD  LVKAGSG+ T G
Sbjct:    1 MSNNQTLFERAQRTIPGGVNSPVRAFRSVGGTPRFVARAQGAYFWDADGKRYIDYIGSWGPMIVGHVHPDVLAAVQHVLADGFSFGAPTEAEIEIAEEICKLVPSIEQVRMVSSGTEATMSALRLARGFTGRSRIVKFEGCYHGHADSLLVKAGSGLLTFG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_BURP1 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Burkholderia pseudomallei (strain 1710b) GN=hemL PE=3 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 7.749e-49
Identity = 93/161 (57.76%), Postives = 111/161 (68.94%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            + N++  F  A+  +PGGVNSPVRAF+SVGG P      +G++ WD DG  YIDY+GSWGP I+GH    VLAA+   +  G SFGAP   E  +AE +   VPSIE VR V+SGTEA M  LRLAR FTGR RI +FEGCYHGHAD  LVKAGSG+ T G
Sbjct:    1 MSNNQTLFERAQRTIPGGVNSPVRAFRSVGGTPRFVARAQGAYFWDADGKRYIDYIGSWGPMIVGHVHPDVLAAVQRVLADGFSFGAPTEAEIEIAEEICKLVPSIEQVRMVSSGTEATMSALRLARGFTGRSRIVKFEGCYHGHADSLLVKAGSGLLTFG 161          
The following BLAST results are available for this feature:
BLAST of FC876179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_BURA45.933e-4957.14Glutamate-1-semialdehyde 2,1-aminomutase OS=Burkho... [more]
GSA_ANASK5.933e-4957.23Glutamate-1-semialdehyde 2,1-aminomutase OS=Anaero... [more]
GSA_ANAD25.933e-4957.23Glutamate-1-semialdehyde 2,1-aminomutase OS=Anaero... [more]
GSA_THEYD7.749e-4959.12Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermo... [more]
GSA_SHEPW7.749e-4957.76Glutamate-1-semialdehyde 2,1-aminomutase OS=Shewan... [more]
GSA_SHEDO7.749e-4957.14Glutamate-1-semialdehyde 2,1-aminomutase OS=Shewan... [more]
GSA_BURTA7.749e-4957.76Glutamate-1-semialdehyde 2,1-aminomutase OS=Burkho... [more]
GSA_BURPS7.749e-4957.76Glutamate-1-semialdehyde 2,1-aminomutase OS=Burkho... [more]
GSA_BURP67.749e-4957.76Glutamate-1-semialdehyde 2,1-aminomutase OS=Burkho... [more]
GSA_BURP17.749e-4957.76Glutamate-1-semialdehyde 2,1-aminomutase OS=Burkho... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32001C05EF DevOvary1 Citrus clementina cDNA clone C32001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876179 ID=FC876179; Name=FC876179; organism=Citrus clementina; type=EST; length=698bp
GACAGTTTCTTATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAG
AGAGTGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTA
GGGCTTTCATGTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGG
ATCCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGA
AAAATTTCACTTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAA
TTGATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGG
TGGTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATA
TCGATGGCAACGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATT
ATTGGTCACGCAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAA
GAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAG
AAATGGTAATCTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAAC
TCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCAC
TGGGAGAGAGAGGATCATNCAATTTGAGGGTTGTTATCATGGCCATGCTG
ATCCATTTCTTGTCAAGGCTGGTAGTGGAGTTGCCACCCTAGGGCTTC
back to top