FC876179

Overview
NameFC876179
Unique NameFC876179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_FRATF (Glutamate-1-semialdehyde 2,1-aminomutase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=hemL PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.945e-48
Identity = 93/160 (58.13%), Postives = 119/160 (74.38%), Query Frame = 2
Query:  218 NSEEAFNVAKELMPGGVNSPVRAFKSVGGQ-PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            NS+  F  A++ +PGGVNSPVRAFKSVG + P      KG++++D+D N+YIDY+GSWGP I+GH DD VL A+   +K G S+GAPC  E  LA+ +I  +P+IE VRFVNSGTEA +  +RLARA+T R +I +FEGCYHGHAD FLV AGSG  +LG
Sbjct:    6 NSQILFAEAQQYIPGGVNSPVRAFKSVGQEFPRFIKFAKGAYLYDVDWNKYIDYIGSWGPMILGHCDDDVLEAIQCQVKNGLSYGAPCKQEVDLAKKIIELMPNIEQVRFVNSGTEATISAIRLARAYTCRNKIIKFEGCYHGHADEFLVAAGSGALSLG 165          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CUPTR (Glutamate-1-semialdehyde 2,1-aminomutase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=hemL PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.945e-48
Identity = 91/159 (57.23%), Postives = 113/159 (71.07%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVAT 688
            +  +++ F+ A++ +PGGVNSPVRAF+SVGG P      +G +MWD DG  YIDY+GSWGP I+GHA  +V+ A+ ET     SFGAP   E  +AE +   VPSIE VR V+SGTEA M  LRLAR FTGR+ I +FEGCYHGHAD  LVKAGSG+ T
Sbjct:    1 MSRNQQLFDRAQQTIPGGVNSPVRAFRSVGGTPRFITRAEGPYMWDADGQRYIDYIGSWGPMIVGHAHPEVVRAVQETAAHSFSFGAPTEAEITMAEEICKLVPSIEQVRLVSSGTEATMSALRLARGFTGRDLIIKFEGCYHGHADSLLVKAGSGLLT 159          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_ACTPJ (Glutamate-1-semialdehyde 2,1-aminomutase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=hemL PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.945e-48
Identity = 89/161 (55.28%), Postives = 117/161 (72.67%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE+ F  A++++PGGVNSPVRAFK VGG P+     +G+++ D DG +YIDYVGSWGP ++GH    ++ A+ + +  G SFGAP   E  LAE+V   VPSIE+VR V+SGTEA M  +RLAR +TGR++I +FEGCYHGH+D  LVKAGSG  TLG
Sbjct:    1 MSKSEQLFEKAQKVIPGGVNSPVRAFKGVGGTPVFIQKAEGAYITDSDGKKYIDYVGSWGPMVLGHNHPAIIDAVLKAVPNGLSFGAPTESEITLAELVTKLVPSIELVRMVSSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHSDSLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_ACTP7 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=hemL PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.945e-48
Identity = 89/161 (55.28%), Postives = 117/161 (72.67%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE+ F  A++++PGGVNSPVRAFK VGG P+     +G+++ D DG +YIDYVGSWGP ++GH    ++ A+ + +  G SFGAP   E  LAE+V   VPSIE+VR V+SGTEA M  +RLAR +TGR++I +FEGCYHGH+D  LVKAGSG  TLG
Sbjct:    1 MSKSEQLFEKAQKVIPGGVNSPVRAFKGVGGTPVFIQKAEGAYITDSDGKKYIDYVGSWGPMVLGHNHPAIIDAVLKAVPNGLSFGAPTESEITLAELVTKLVPSIELVRMVSSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHSDSLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_ACTP2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=hemL PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.945e-48
Identity = 89/161 (55.28%), Postives = 117/161 (72.67%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE+ F  A++++PGGVNSPVRAFK VGG P+     +G+++ D DG +YIDYVGSWGP ++GH    ++ A+ + +  G SFGAP   E  LAE+V   VPSIE+VR V+SGTEA M  +RLAR +TGR++I +FEGCYHGH+D  LVKAGSG  TLG
Sbjct:    1 MSKSEQLFEKAQKVIPGGVNSPVRAFKGVGGTPVFIQKAEGAYITDSDGKKYIDYVGSWGPMVLGHNHPAIIDAVLKAVPNGLSFGAPTESEITLAELVTKLVPSIELVRMVSSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHSDSLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SHEPA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=hemL PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.846e-48
Identity = 92/161 (57.14%), Postives = 115/161 (71.43%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  S+E F  AK+ +PGGVNSPVRAF  VGG P   +   G++++D DG +YIDYVGSWGP I+GH   ++  A+ + ++ G SFGAP  LE  +AE VI  VPSIE VR V+SGTEA M  +RLAR FT R++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MTRSDELFEQAKKTIPGGVNSPVRAFSGVGGSPRFIEKADGAYIFDADGKKYIDYVGSWGPMILGHNHPKIREAVLKAVENGLSFGAPTELEITMAEKVIEMVPSIEQVRMVSSGTEATMSAIRLARGFTNRDKILKFEGCYHGHADCLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SHEFN (Glutamate-1-semialdehyde 2,1-aminomutase OS=Shewanella frigidimarina (strain NCIMB 400) GN=hemL PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.846e-48
Identity = 93/161 (57.76%), Postives = 114/161 (70.81%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  F  AK+ +PGGVNSPVRAF  VGG P+  +   G++++D DG +YIDYVGSWGP I+GH   ++  A+ + +  G SFGAP  LE  +AE VIS VPSIE VR V+SGTEA M  +RLAR FT R+ I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MTRSEVLFEQAKKTIPGGVNSPVRAFNGVGGSPLFIEKADGAYIFDADGKKYIDYVGSWGPMILGHNHPKIRQAVLDAVDNGLSFGAPTELEVKMAEKVISMVPSIEQVRMVSSGTEATMSAIRLARGFTNRDNILKFEGCYHGHADCLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_RALME (Glutamate-1-semialdehyde 2,1-aminomutase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=hemL PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.846e-48
Identity = 91/159 (57.23%), Postives = 114/159 (71.70%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVAT 688
            +  +++ F+ A++ +PGGVNSPVRAF+SVGG P      +G++MWD DG  YIDY+GSWGP I+GHA   V+ A+ ET  +  SFGAP   E  +AE +   VPSIE VR V+SGTEA M  LRLAR FTGR+ I +FEGCYHGHAD  LVKAGSG+ T
Sbjct:    1 MSRNQQLFDRAQQTIPGGVNSPVRAFRSVGGTPRFITRAEGAYMWDADGQRYIDYIGSWGPMIVGHAHPDVVRAVQETATQSFSFGAPTEAEIDMAEEICKLVPSIEQVRLVSSGTEATMSALRLARGFTGRDLIIKFEGCYHGHADSLLVKAGSGLLT 159          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PSEAE (Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudomonas aeruginosa GN=hemL PE=3 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 3.846e-48
Identity = 91/162 (56.17%), Postives = 117/162 (72.22%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            +  SE  FN A++ +PGGVNSPVRAFKSVGG P+ F   +G+++ D D   Y+DYVGSWGP I+GH+   VL A+   +  G S+GAP  LE  +A++V S VPS+EMVR V+SGTEA M  +RLAR +TGR+ I +FEGCYHGH+D  LVKAGSG  T G+
Sbjct:    1 MSRSETLFNNAQKHIPGGVNSPVRAFKSVGGTPLFFKHAEGAYVLDEDDKRYVDYVGSWGPMILGHSHPDVLDAVRRQLDHGLSYGAPTALEVEMADLVCSMVPSMEMVRMVSSGTEATMSAIRLARGYTGRDSIIKFEGCYHGHSDSLLVKAGSGALTFGV 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PSEAB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=hemL PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.846e-48
Identity = 91/162 (56.17%), Postives = 117/162 (72.22%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            +  SE  FN A++ +PGGVNSPVRAFKSVGG P+ F   +G+++ D D   Y+DYVGSWGP I+GH+   VL A+   +  G S+GAP  LE  +A++V S VPS+EMVR V+SGTEA M  +RLAR +TGR+ I +FEGCYHGH+D  LVKAGSG  T G+
Sbjct:    1 MSRSETLFNNAQKHIPGGVNSPVRAFKSVGGTPLFFKHAEGAYVLDEDDKRYVDYVGSWGPMILGHSHPDVLDAVRRQLDHGLSYGAPTALEVEMADLVCSMVPSMEMVRMVSSGTEATMSAIRLARGYTGRDSIIKFEGCYHGHSDSLLVKAGSGALTFGV 162          
The following BLAST results are available for this feature:
BLAST of FC876179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_FRATF2.945e-4858.13Glutamate-1-semialdehyde 2,1-aminomutase OS=Franci... [more]
GSA_CUPTR2.945e-4857.23Glutamate-1-semialdehyde 2,1-aminomutase OS=Cupria... [more]
GSA_ACTPJ2.945e-4855.28Glutamate-1-semialdehyde 2,1-aminomutase OS=Actino... [more]
GSA_ACTP72.945e-4855.28Glutamate-1-semialdehyde 2,1-aminomutase OS=Actino... [more]
GSA_ACTP22.945e-4855.28Glutamate-1-semialdehyde 2,1-aminomutase OS=Actino... [more]
GSA_SHEPA3.846e-4857.14Glutamate-1-semialdehyde 2,1-aminomutase OS=Shewan... [more]
GSA_SHEFN3.846e-4857.76Glutamate-1-semialdehyde 2,1-aminomutase OS=Shewan... [more]
GSA_RALME3.846e-4857.23Glutamate-1-semialdehyde 2,1-aminomutase OS=Ralsto... [more]
GSA_PSEAE3.846e-4856.17Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudo... [more]
GSA_PSEAB3.846e-4856.17Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudo... [more]

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Properties
Property NameValue
Genbank descriptionC32001C05EF DevOvary1 Citrus clementina cDNA clone C32001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876179 ID=FC876179; Name=FC876179; organism=Citrus clementina; type=EST; length=698bp
GACAGTTTCTTATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAG
AGAGTGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTA
GGGCTTTCATGTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGG
ATCCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGA
AAAATTTCACTTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAA
TTGATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGG
TGGTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATA
TCGATGGCAACGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATT
ATTGGTCACGCAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAA
GAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAG
AAATGGTAATCTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAAC
TCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCAC
TGGGAGAGAGAGGATCATNCAATTTGAGGGTTGTTATCATGGCCATGCTG
ATCCATTTCTTGTCAAGGCTGGTAGTGGAGTTGCCACCCTAGGGCTTC
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