FC876179

Overview
NameFC876179
Unique NameFC876179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_YERPS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Yersinia pseudotuberculosis GN=hemL PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.560e-48
Identity = 88/161 (54.66%), Postives = 118/161 (73.29%), Query Frame = 2 
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  +  A++L+PGGVNSPVRAF  VGG P+  +   G++++D+DG  YIDYVGSWGP I+GH    +  A+ E +++G SFGAP  +E  +A++V   VP+++MVR VNSGTEA M  +RLAR +TGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MSKSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLG 161
[Close]
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_YERPP (Glutamate-1-semialdehyde 2,1-aminomutase OS=Yersinia pestis (strain Pestoides F) GN=hemL PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.560e-48
Identity = 88/161 (54.66%), Postives = 118/161 (73.29%), Query Frame = 2 
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  +  A++L+PGGVNSPVRAF  VGG P+  +   G++++D+DG  YIDYVGSWGP I+GH    +  A+ E +++G SFGAP  +E  +A++V   VP+++MVR VNSGTEA M  +RLAR +TGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MSKSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLG 161
[Close]
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_YERPN (Glutamate-1-semialdehyde 2,1-aminomutase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=hemL PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.560e-48
Identity = 88/161 (54.66%), Postives = 118/161 (73.29%), Query Frame = 2 
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  +  A++L+PGGVNSPVRAF  VGG P+  +   G++++D+DG  YIDYVGSWGP I+GH    +  A+ E +++G SFGAP  +E  +A++V   VP+++MVR VNSGTEA M  +RLAR +TGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MSKSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLG 161
[Close]
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_YERPG (Glutamate-1-semialdehyde 2,1-aminomutase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=hemL PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.560e-48
Identity = 88/161 (54.66%), Postives = 118/161 (73.29%), Query Frame = 2 
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  +  A++L+PGGVNSPVRAF  VGG P+  +   G++++D+DG  YIDYVGSWGP I+GH    +  A+ E +++G SFGAP  +E  +A++V   VP+++MVR VNSGTEA M  +RLAR +TGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MSKSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLG 161
[Close]
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_YERPE (Glutamate-1-semialdehyde 2,1-aminomutase OS=Yersinia pestis GN=hemL PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.560e-48
Identity = 88/161 (54.66%), Postives = 118/161 (73.29%), Query Frame = 2 
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  +  A++L+PGGVNSPVRAF  VGG P+  +   G++++D+DG  YIDYVGSWGP I+GH    +  A+ E +++G SFGAP  +E  +A++V   VP+++MVR VNSGTEA M  +RLAR +TGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MSKSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLG 161
[Close]
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_YERPB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=hemL PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.560e-48
Identity = 88/161 (54.66%), Postives = 118/161 (73.29%), Query Frame = 2 
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  +  A++L+PGGVNSPVRAF  VGG P+  +   G++++D+DG  YIDYVGSWGP I+GH    +  A+ E +++G SFGAP  +E  +A++V   VP+++MVR VNSGTEA M  +RLAR +TGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MSKSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLG 161
[Close]
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_YERPA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=hemL PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.560e-48
Identity = 88/161 (54.66%), Postives = 118/161 (73.29%), Query Frame = 2 
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  +  A++L+PGGVNSPVRAF  VGG P+  +   G++++D+DG  YIDYVGSWGP I+GH    +  A+ E +++G SFGAP  +E  +A++V   VP+++MVR VNSGTEA M  +RLAR +TGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MSKSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLG 161
[Close]
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_YERP3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=hemL PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.560e-48
Identity = 88/161 (54.66%), Postives = 118/161 (73.29%), Query Frame = 2 
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  +  A++L+PGGVNSPVRAF  VGG P+  +   G++++D+DG  YIDYVGSWGP I+GH    +  A+ E +++G SFGAP  +E  +A++V   VP+++MVR VNSGTEA M  +RLAR +TGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MSKSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLG 161
[Close]
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_TOLAT (Glutamate-1-semialdehyde 2,1-aminomutase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=hemL PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.560e-48
Identity = 88/163 (53.99%), Postives = 117/163 (71.78%), Query Frame = 2 
Query:  206 FTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            ++ + SE+ F  A++ +PGGVNSPVRAF  VGG P       G++++D+DGN YIDYVGSWGP ++GH    + AA+   ++ G S+GAP   E ++AEM+   +P +EMVR VNSGTEA M  +RLAR +TGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    3 YSTQRSEQLFTAAQQSIPGGVNSPVRAFNGVGGTPRFIAKADGAYLFDVDGNRYIDYVGSWGPMLLGHNHPAIKAAVLAAVENGLSYGAPTESEVLMAEMIRQIMPDMEMVRMVNSGTEATMSAIRLARGYTGRDKIVKFEGCYHGHADCLLVKAGSGALTLG 165
[Close]
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SHEHH (Glutamate-1-semialdehyde 2,1-aminomutase OS=Shewanella halifaxensis (strain HAW-EB4) GN=hemL PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.560e-48
Identity = 92/161 (57.14%), Postives = 114/161 (70.81%), Query Frame = 2 
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  S+E F  AK+ +PGGVNSPVRAF  VGG P   +   G++++D DG +YIDYVGSWGP I+GH   ++  A+   ++ G SFGAP  LE  +AE VI  VPSIE VR V+SGTEA M  +RLAR FT R++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MTRSDELFEQAKKTIPGGVNSPVRAFSGVGGSPRFIEKADGAYIFDADGKKYIDYVGSWGPMILGHNHPKIREAVLAAVENGLSFGAPTELEITMAEKVIEMVPSIEQVRMVSSGTEATMSAIRLARGFTNRDKILKFEGCYHGHADCLLVKAGSGALTLG 161
The following BLAST results are available for this feature:
BLAST of FC876179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_YERPS6.560e-4854.66Glutamate-1-semialdehyde 2,1-aminomutase OS=Yersin... [more]
GSA_YERPP6.560e-4854.66Glutamate-1-semialdehyde 2,1-aminomutase OS=Yersin... [more]
GSA_YERPN6.560e-4854.66Glutamate-1-semialdehyde 2,1-aminomutase OS=Yersin... [more]
GSA_YERPG6.560e-4854.66Glutamate-1-semialdehyde 2,1-aminomutase OS=Yersin... [more]
GSA_YERPE6.560e-4854.66Glutamate-1-semialdehyde 2,1-aminomutase OS=Yersin... [more]
GSA_YERPB6.560e-4854.66Glutamate-1-semialdehyde 2,1-aminomutase OS=Yersin... [more]
GSA_YERPA6.560e-4854.66Glutamate-1-semialdehyde 2,1-aminomutase OS=Yersin... [more]
GSA_YERP36.560e-4854.66Glutamate-1-semialdehyde 2,1-aminomutase OS=Yersin... [more]
GSA_TOLAT6.560e-4853.99Glutamate-1-semialdehyde 2,1-aminomutase OS=Tolumo... [more]
GSA_SHEHH6.560e-4857.14Glutamate-1-semialdehyde 2,1-aminomutase OS=Shewan... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32001C05EF DevOvary1 Citrus clementina cDNA clone C32001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876179 ID=FC876179; Name=FC876179; organism=Citrus clementina; type=EST; length=698bp
GACAGTTTCTTATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAG
AGAGTGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTA
GGGCTTTCATGTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGG
ATCCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGA
AAAATTTCACTTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAA
TTGATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGG
TGGTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATA
TCGATGGCAACGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATT
ATTGGTCACGCAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAA
GAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAG
AAATGGTAATCTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAAC
TCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCAC
TGGGAGAGAGAGGATCATNCAATTTGAGGGTTGTTATCATGGCCATGCTG
ATCCATTTCTTGTCAAGGCTGGTAGTGGAGTTGCCACCCTAGGGCTTC
back to top