FC876179

Overview
NameFC876179
Unique NameFC876179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_RHOBA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Rhodopirellula baltica GN=hemL PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.560e-48
Identity = 92/158 (58.23%), Postives = 113/158 (71.52%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            S  AF  A  LMPGGVNSP RAF +VGG P+  +  +G +++DIDGN YIDY+GSWGP I+GHA  +V+ A+ +   KGTS+GAP   E+ LAE +I AVPSIE VR VNSGTEA M  LR+AR  TGR+++ +F G YHGH D  LV AGS  ATLG
Sbjct:   18 SVAAFQRASALMPGGVNSPARAFGAVGGTPLFIERAEGPYLYDIDGNRYIDYIGSWGPMILGHAHPEVINAITQAAAKGTSYGAPTEAESRLAEQIIEAVPSIEKVRLVNSGTEATMSALRVARGATGRKKVIKFAGNYHGHVDSLLVAAGSAAATLG 175          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_RALEJ (Glutamate-1-semialdehyde 2,1-aminomutase OS=Ralstonia eutropha (strain JMP134) GN=hemL PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.560e-48
Identity = 91/159 (57.23%), Postives = 113/159 (71.07%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVAT 688
            +  +++ F+ A++ +PGGVNSPVRAF+SVGG P      +G++MWD DG  YIDY+GSWGP I+GHA   V+ A+ ET     SFGAP   E  +AE +   VPSIE VR V+SGTEA M  LRLAR FTGR+ I +FEGCYHGHAD  LVKAGSG+ T
Sbjct:    1 MSRNQQLFDRAQQTIPGGVNSPVRAFRSVGGTPRFITCAEGAYMWDADGQRYIDYIGSWGPMIVGHAHPDVVRAVQETAAHSFSFGAPTEAEIDMAEEICKLVPSIEQVRLVSSGTEATMSALRLARGFTGRDLIIKFEGCYHGHADSLLVKAGSGLLT 159          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_NITSB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Nitratiruptor sp. (strain SB155-2) GN=hemL PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.560e-48
Identity = 92/161 (57.14%), Postives = 113/161 (70.19%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            L  SE A+  A   +PGGV+SPVRAFKSVGG P   D  +G+ ++DIDGN YIDYV SWGP I GHAD + L A+ E  +KG SFG P LLE  LA  ++    +I+ +RFV+SGTEA M  +RLAR +TGR+ I +FEGCYHGH+D  LV AGSG AT G
Sbjct:    2 LSKSEAAYKEALRYIPGGVDSPVRAFKSVGGVPPFIDRGEGAFLYDIDGNRYIDYVQSWGPLIFGHADKETLEAVCEQAQKGLSFGTPTLLETELAREIVELFDNIDKIRFVSSGTEAVMSAIRLARGYTGRDDIVKFEGCYHGHSDSLLVSAGSGAATFG 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_METI4 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Methylacidiphilum infernorum (isolate V4) GN=hemL PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.560e-48
Identity = 92/156 (58.97%), Postives = 115/156 (73.72%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVAT 688
            SE+ +  A+E+ PGGVNSPVR+F+SVGG P      KGS + D+DGN+Y DYV SWG  I GHA   V+ A+GE +K GTS+GA   LE  LA ++ SA+PSIE +RFVNSGTEACM  +R+AR  +GRE+I +FEGCYHGH+D  LVKAGSG  T
Sbjct:   11 SEKLWKEAQEIFPGGVNSPVRSFQSVGGFPFYVSRAKGSKITDVDGNDYTDYVCSWGALIHGHAHPAVVRAVGEALKDGTSYGANSPLEIKLARLIQSAMPSIEKIRFVNSGTEACMTAIRIARGVSGREKIMKFEGCYHGHSDSLLVKAGSGALT 166          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_ENTS8 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=hemL PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.560e-48
Identity = 89/161 (55.28%), Postives = 115/161 (71.43%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  F  A+EL+PGGVNSPVRAF  VGG P+  +   G++++D DG  YIDYVGSWGP ++GH    +  A+ E  ++G SFGAP  +E  +A++V   VP+++MVR VNSGTEA M  +RLAR FT R++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MSKSENLFAAARELIPGGVNSPVRAFTGVGGTPLFIERADGAYLYDADGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAQLVTELVPTMDMVRMVNSGTEATMSAIRLARGFTRRDKIIKFEGCYHGHADHLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_EDWI9 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Edwardsiella ictaluri (strain 93-146) GN=hemL PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.560e-48
Identity = 94/165 (56.97%), Postives = 117/165 (70.91%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHAD----DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  +  AK L+PGGVNSPVRAF  VGG P+  +   G+H++D DG  YIDYVGSWGP I+GH      D V+AA+G    +G SFGAP  +E  +AE+V S + S++MVR VNSGTEA M  +RLAR FTGR+++ +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MNKSERLYEQAKTLIPGGVNSPVRAFTGVGGTPLFIERADGAHLYDADGKAYIDYVGSWGPMILGHNHPVIRDAVIAAVG----RGLSFGAPTEMEVRMAELVTSLIDSMDMVRMVNSGTEATMSAIRLARGFTGRDKLIKFEGCYHGHADHLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_AZOSE (Glutamate-1-semialdehyde 2,1-aminomutase OS=Azoarcus sp. (strain EbN1) GN=hemL PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.560e-48
Identity = 91/158 (57.59%), Postives = 112/158 (70.89%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +E  F  A++ +PGGVNSPVRAF+SVGG P      +G+ +WD DG  Y+DYVGSWGPAI GHA   ++ A+ E    G SFGAP   E  +AE++   +PSIEMVR V+SGTEA M  +RLAR FTGR+ I +FEGCYHGHAD  LVKAGSG+ T G
Sbjct:    5 NETLFQRAQKSIPGGVNSPVRAFRSVGGTPRFISRAEGARVWDADGKAYVDYVGSWGPAIAGHAHPAIVEAVREAALAGLSFGAPSEAEVDIAELICELMPSIEMVRLVSSGTEATMSAIRLARGFTGRDAIVKFEGCYHGHADSLLVKAGSGLLTFG 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PSEPF (Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudomonas fluorescens (strain Pf0-1) GN=hemL PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.568e-48
Identity = 90/162 (55.56%), Postives = 117/162 (72.22%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            +  SE  F  A++ +PGGVNSPVRAFKSVGG P+ F   +G+++ D D   Y+DYVGSWGP I+GH+   VL A+   ++ G S+GAP  +E  +A++V S VPS+EMVR V+SGTEA M  +RLAR FTGR+ I +FEGCYHGH+D  LVKAGSG  T G+
Sbjct:    1 MSRSETLFANAQKHIPGGVNSPVRAFKSVGGTPLFFKHAEGAYVTDEDDKRYVDYVGSWGPMILGHSHPDVLDAVRNQLQHGLSYGAPTAMETEMADLVCSLVPSLEMVRMVSSGTEATMSAIRLARGFTGRDSIIKFEGCYHGHSDSLLVKAGSGALTQGV 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PSEF5 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=hemL PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.568e-48
Identity = 90/162 (55.56%), Postives = 118/162 (72.84%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            +  SE  F  A++ +PGGVNSPVRAFKSVGG P+ F   +G+++ D D   Y+DYVGSWGP I+GH+   VL A+ + ++ G S+GAP  +E  +A++V S VPS+EMVR V+SGTEA M  +RLAR FTGR+ I +FEGCYHGH+D  LVKAGSG  T G+
Sbjct:    1 MSRSETLFANAQKHIPGGVNSPVRAFKSVGGTPLFFKHAEGAYVTDEDDKRYVDYVGSWGPMILGHSHPDVLDAVRKQLEHGLSYGAPTAMETEMADLVCSIVPSMEMVRMVSSGTEATMSAIRLARGFTGRDSIIKFEGCYHGHSDSLLVKAGSGALTQGV 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_POLNA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Polaromonas naphthalenivorans (strain CJ2) GN=hemL PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.568e-48
Identity = 90/154 (58.44%), Postives = 113/154 (73.38%), Query Frame = 2
Query:  233 FNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            F  A++L+PGGVNSPVRAFK+VGG P      +G++ WD DG  YIDY+GSWGP I+GH    V+ A+ + + +G S+GAP   E  LAE ++  VPSIEMVR V+SGTEA M V+RLAR  TGR +I +FEGCYHGH+D  LVKAGSG+AT G
Sbjct:   20 FERAQKLIPGGVNSPVRAFKAVGGTPRFIQRAQGAYFWDADGQRYIDYIGSWGPMILGHGHPAVVEAVQKAVLEGFSYGAPTEREVELAEEIVKLVPSIEMVRLVSSGTEATMSVIRLARGATGRSKIIKFEGCYHGHSDALLVKAGSGLATFG 173          
The following BLAST results are available for this feature:
BLAST of FC876179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_RHOBA6.560e-4858.23Glutamate-1-semialdehyde 2,1-aminomutase OS=Rhodop... [more]
GSA_RALEJ6.560e-4857.23Glutamate-1-semialdehyde 2,1-aminomutase OS=Ralsto... [more]
GSA_NITSB6.560e-4857.14Glutamate-1-semialdehyde 2,1-aminomutase OS=Nitrat... [more]
GSA_METI46.560e-4858.97Glutamate-1-semialdehyde 2,1-aminomutase OS=Methyl... [more]
GSA_ENTS86.560e-4855.28Glutamate-1-semialdehyde 2,1-aminomutase OS=Entero... [more]
GSA_EDWI96.560e-4856.97Glutamate-1-semialdehyde 2,1-aminomutase OS=Edward... [more]
GSA_AZOSE6.560e-4857.59Glutamate-1-semialdehyde 2,1-aminomutase OS=Azoarc... [more]
GSA_PSEPF8.568e-4855.56Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudo... [more]
GSA_PSEF58.568e-4855.56Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudo... [more]
GSA_POLNA8.568e-4858.44Glutamate-1-semialdehyde 2,1-aminomutase OS=Polaro... [more]

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Properties
Property NameValue
Genbank descriptionC32001C05EF DevOvary1 Citrus clementina cDNA clone C32001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876179 ID=FC876179; Name=FC876179; organism=Citrus clementina; type=EST; length=698bp
GACAGTTTCTTATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAG
AGAGTGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTA
GGGCTTTCATGTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGG
ATCCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGA
AAAATTTCACTTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAA
TTGATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGG
TGGTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATA
TCGATGGCAACGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATT
ATTGGTCACGCAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAA
GAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAG
AAATGGTAATCTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAAC
TCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCAC
TGGGAGAGAGAGGATCATNCAATTTGAGGGTTGTTATCATGGCCATGCTG
ATCCATTTCTTGTCAAGGCTGGTAGTGGAGTTGCCACCCTAGGGCTTC
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