FC876179

Overview
NameFC876179
Unique NameFC876179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_RUBXD (Glutamate-1-semialdehyde 2,1-aminomutase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=hemL PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.909e-47
Identity = 93/171 (54.39%), Postives = 119/171 (69.59%), Query Frame = 2
Query:  185 VEEQKKNFTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            ++E +       S      A   MPGGVNSPVRAF+SVGG P+  +  +G  ++D DGN YIDYV S+GP ++GHA  +V+ A+    ++GT+FGAP  LE  LAE+V  AVPS+E+VR VNSGTEA M  +RLAR +TGRE+I +F+G YHGH D  LV AGSGVATLGL
Sbjct:    4 LQEARLRLARDRSARLMERAVRRMPGGVNSPVRAFRSVGGDPLFMERGEGPRIFDADGNAYIDYVMSYGPLLLGHAPPEVVGAVERAARRGTTFGAPTRLEVELAELVCEAVPSVEVVRMVNSGTEATMSAVRLARGYTGREKILKFDGNYHGHGDALLVSAGSGVATLGL 174          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_POLSJ (Glutamate-1-semialdehyde 2,1-aminomutase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=hemL PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.909e-47
Identity = 91/161 (56.52%), Postives = 113/161 (70.19%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            L  +   F  AK+L+PGGVNSPVRAFK+VGG P      +G++ WD D   YIDY+GSWGP I+GH    VLA++ + +  G S+GAP   E  LAE ++  VPS+EMVR V+SGTEA M  +RLAR  TGR +I +FEGCYHGHAD  LVKAGSG+AT G
Sbjct:   13 LSRNTALFERAKKLIPGGVNSPVRAFKAVGGTPRFVQRAQGAYFWDADDQRYIDYIGSWGPMILGHGHPAVLASVQKALLDGFSYGAPTEREVELAEELVRLVPSLEMVRLVSSGTEAAMSAIRLARGATGRSKIIKFEGCYHGHADALLVKAGSGLATFG 173          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_BORPE (Glutamate-1-semialdehyde 2,1-aminomutase OS=Bordetella pertussis GN=hemL PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.909e-47
Identity = 91/161 (56.52%), Postives = 115/161 (71.43%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  + E F+ A   +PGGVNSPVRAF+SVGG P      +G ++WD +G +YIDYVGSWGPAI+GHA  +V+ A+ E    G SFGAP   E  LAEM+I+ +PS+E VR V+SGTEA M  +RLAR  TGR +I +FEGCYHGH+D  LVKAGSG+ T G
Sbjct:    1 MSTNAELFDRACRSIPGGVNSPVRAFRSVGGTPRFIQRAQGPYVWDAEGKQYIDYVGSWGPAILGHAHPEVVRAVQEAAVHGLSFGAPTEAEVELAEMLIARLPSLEQVRLVSSGTEATMTAIRLARGATGRHKIIKFEGCYHGHSDSLLVKAGSGLLTFG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_BORPA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Bordetella parapertussis GN=hemL PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.909e-47
Identity = 91/161 (56.52%), Postives = 115/161 (71.43%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  + E F+ A   +PGGVNSPVRAF+SVGG P      +G ++WD +G +YIDYVGSWGPAI+GHA  +V+ A+ E    G SFGAP   E  LAEM+I+ +PS+E VR V+SGTEA M  +RLAR  TGR +I +FEGCYHGH+D  LVKAGSG+ T G
Sbjct:    1 MSTNAELFDRACRSIPGGVNSPVRAFRSVGGTPRFIQRAQGPYVWDAEGKQYIDYVGSWGPAILGHAHPEVVRAVQEAAVHGLSFGAPTEAEVELAEMLIARLPSLEQVRLVSSGTEATMTAIRLARGATGRHKIIKFEGCYHGHSDSLLVKAGSGLLTFG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_BORBR (Glutamate-1-semialdehyde 2,1-aminomutase OS=Bordetella bronchiseptica GN=hemL PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.909e-47
Identity = 91/161 (56.52%), Postives = 115/161 (71.43%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  + E F+ A   +PGGVNSPVRAF+SVGG P      +G ++WD +G +YIDYVGSWGPAI+GHA  +V+ A+ E    G SFGAP   E  LAEM+I+ +PS+E VR V+SGTEA M  +RLAR  TGR +I +FEGCYHGH+D  LVKAGSG+ T G
Sbjct:    1 MSTNAELFDRACRSIPGGVNSPVRAFRSVGGTPRFIQRAQGPYVWDAEGKQYIDYVGSWGPAILGHAHPEVVRAVQEAAVHGLSFGAPTEAEVELAEMLIARLPSLEQVRLVSSGTEATMTAIRLARGATGRHKIIKFEGCYHGHSDSLLVKAGSGLLTFG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_ANADF (Glutamate-1-semialdehyde 2,1-aminomutase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=hemL PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.909e-47
Identity = 92/159 (57.86%), Postives = 114/159 (71.70%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            SE+ F  A+ L PGGVNSPVRAF+ VGG P      KGSH++D+DGN+Y+DYV SWGP I+GHA  +V+  + + MK+G SFGAP   E  LAE+V   +P IE +RF +SGTEA    +R+AR FT R+ I +FEGCYHG  DP LVKAGSGV TLGL
Sbjct:    6 SEKLFAKAQTLFPGGVNSPVRAFRGVGGTPRFIARGKGSHLFDVDGNDYVDYVLSWGPMIVGHAHPEVMREVQDAMKEGASFGAPSPREITLAELVRERMPWIEKMRFCSSGTEATTAAIRVARGFTSRDDILKFEGCYHGAGDPLLVKAGSGVETLGL 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PSEPG (Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudomonas putida (strain GB-1) GN=hemL PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.493e-47
Identity = 88/162 (54.32%), Postives = 119/162 (73.46%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            +  SE+ F  A++ +PGGVNSPVRAFKSVGG P+ F   +G+++ D D   Y+DYVGSWGP I+GH    VL ++ + ++ G S+GAP  +E  +A++V S VPS+EMVR V+SGTEA M  +RLAR +TGR+ I +FEGCYHGH+D  LVKAGSG+ T G+
Sbjct:    1 MSRSEDLFAKAQKHIPGGVNSPVRAFKSVGGTPLFFKHAEGAYVVDEDDKRYVDYVGSWGPMILGHGHPDVLDSVRKQLEHGLSYGAPTAMETDMADLVCSLVPSMEMVRMVSSGTEATMSAIRLARGYTGRDAIIKFEGCYHGHSDSLLVKAGSGLLTQGV 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_WOLSU (Glutamate-1-semialdehyde 2,1-aminomutase OS=Wolinella succinogenes GN=hemL PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.256e-47
Identity = 89/159 (55.97%), Postives = 115/159 (72.33%), Query Frame = 2
Query:  218 NSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            NS   FN AK+++PGGVNSPVRAF++VGG P      KGS++ D DGN YID+V SWGP + GHAD  +  A+ E +K+G SFGAP   E +LA+ +I+    IE +RF +SGTEA M  +RLAR +TGR+ I +FEGCYHGH+D  LV+AGSG+AT G
Sbjct:    5 NSINDFNEAKQVIPGGVNSPVRAFRAVGGTPPFIKEAKGSYLVDEDGNRYIDFVQSWGPLLFGHADLDIQKAVEEAIKRGLSFGAPTTSETLLAKEIIALYEGIEKIRFTSSGTEATMSAIRLARGYTGRDDIIKFEGCYHGHSDALLVQAGSGLATFG 163          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SODGM (Glutamate-1-semialdehyde 2,1-aminomutase OS=Sodalis glossinidius (strain morsitans) GN=hemL PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.256e-47
Identity = 88/161 (54.66%), Postives = 114/161 (70.81%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            + +S   +  A++L+PGGVNSPVRAF  VGG P+   S  G+ + D DGN YIDYVGSWGP ++GH    +  A+ + +++G SFGAP  +E  +A ++   VPSIE VR VNSGTEA M  +RLAR +TGR+R+ +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MSHSASLYAEAQQLIPGGVNSPVRAFNGVGGTPLFIASADGARLTDADGNSYIDYVGSWGPMVLGHNHPAIRQAVLDAVQRGLSFGAPTEIEVKMARLLTELVPSIESVRMVNSGTEATMSTIRLARGYTGRDRVIKFEGCYHGHADGLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SERP5 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Serratia proteamaculans (strain 568) GN=hemL PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.256e-47
Identity = 87/158 (55.06%), Postives = 115/158 (72.78%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            SE  +  AK+++PGGVNSPVRAF  VGG P+  +   G++++D+DG  YIDYVGSWGP ++GH    +  A+ E  ++G SFGAP  +E  +AE+V   VP+++MVR VNSGTEA M  +RLAR +T R++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    7 SESLYAQAKQVIPGGVNSPVRAFNGVGGVPLFIERADGAYLFDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAQRGLSFGAPTEMEVKMAELVTELVPTMDMVRMVNSGTEATMSAIRLARGYTNRDKIIKFEGCYHGHADCLLVKAGSGALTLG 164          
The following BLAST results are available for this feature:
BLAST of FC876179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_RUBXD1.909e-4754.39Glutamate-1-semialdehyde 2,1-aminomutase OS=Rubrob... [more]
GSA_POLSJ1.909e-4756.52Glutamate-1-semialdehyde 2,1-aminomutase OS=Polaro... [more]
GSA_BORPE1.909e-4756.52Glutamate-1-semialdehyde 2,1-aminomutase OS=Bordet... [more]
GSA_BORPA1.909e-4756.52Glutamate-1-semialdehyde 2,1-aminomutase OS=Bordet... [more]
GSA_BORBR1.909e-4756.52Glutamate-1-semialdehyde 2,1-aminomutase OS=Bordet... [more]
GSA_ANADF1.909e-4757.86Glutamate-1-semialdehyde 2,1-aminomutase OS=Anaero... [more]
GSA_PSEPG2.493e-4754.32Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudo... [more]
GSA_WOLSU3.256e-4755.97Glutamate-1-semialdehyde 2,1-aminomutase OS=Woline... [more]
GSA_SODGM3.256e-4754.66Glutamate-1-semialdehyde 2,1-aminomutase OS=Sodali... [more]
GSA_SERP53.256e-4755.06Glutamate-1-semialdehyde 2,1-aminomutase OS=Serrat... [more]

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Properties
Property NameValue
Genbank descriptionC32001C05EF DevOvary1 Citrus clementina cDNA clone C32001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876179 ID=FC876179; Name=FC876179; organism=Citrus clementina; type=EST; length=698bp
GACAGTTTCTTATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAG
AGAGTGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTA
GGGCTTTCATGTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGG
ATCCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGA
AAAATTTCACTTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAA
TTGATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGG
TGGTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATA
TCGATGGCAACGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATT
ATTGGTCACGCAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAA
GAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAG
AAATGGTAATCTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAAC
TCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCAC
TGGGAGAGAGAGGATCATNCAATTTGAGGGTTGTTATCATGGCCATGCTG
ATCCATTTCTTGTCAAGGCTGGTAGTGGAGTTGCCACCCTAGGGCTTC
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