FC876179

Overview
NameFC876179
Unique NameFC876179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PSEA7 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudomonas aeruginosa (strain PA7) GN=hemL PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.256e-47
Identity = 89/162 (54.94%), Postives = 117/162 (72.22%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            +  SE  F+ A++ +PGGVNSPVRAFKSVGG P+ F   +G+++ D D   Y+DYVGSWGP I+GH+   VL A+   +  G S+GAP  LE  +A++V + VPS+EMVR V+SGTEA M  +RLAR +TGR+ I +FEGCYHGH+D  LVKAGSG  T G+
Sbjct:    1 MSRSETLFSNAQKHIPGGVNSPVRAFKSVGGTPLFFKHAEGAYVLDEDDKRYVDYVGSWGPMILGHSHPDVLDAVRRQLDHGLSYGAPTALEVEMADLVCAMVPSMEMVRMVSSGTEATMSAIRLARGYTGRDSIIKFEGCYHGHSDSLLVKAGSGALTFGV 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_MARMS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Marinomonas sp. (strain MWYL1) GN=hemL PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.256e-47
Identity = 90/162 (55.56%), Postives = 116/162 (71.60%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            +  SE+ +  A+  +PGGVNSPVRAF  VGG PI F   +G++++D D   YIDYVGSWGP I+GH+   VL A+ + +  G SFGAP  +E  +AE V   VPS++MVR VNSGTEA M  +RLAR +TGR++I +FEGCYHGH+D  LVKAGSG  TLG+
Sbjct:    1 MSRSEDLYARAQHRIPGGVNSPVRAFNGVGGTPIFFQRGEGAYVYDEDKKRYIDYVGSWGPMILGHSHPDVLDAVRQQLDFGLSFGAPTEVEITMAEKVCELVPSMDMVRMVNSGTEATMSAIRLARGYTGRDKIVKFEGCYHGHSDSLLVKAGSGALTLGV 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_LEPCP (Glutamate-1-semialdehyde 2,1-aminomutase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=hemL PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.256e-47
Identity = 88/161 (54.66%), Postives = 115/161 (71.43%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            + ++ E F  A+  +PGGVNSPVRAF++VGG P      +G++MWD +G +YIDY+GSWGP I+GH    VLAA+ +   +G SFGAP   E  LAE +++ VPS E +R V+SGTEA M  +RLAR  TGR ++ +FEGCYHGHAD  LVKAGSG+AT G
Sbjct:    5 VSSNAELFERAQRSIPGGVNSPVRAFRAVGGTPRFIARAQGAYMWDAEGKQYIDYIGSWGPMILGHGHPAVLAAVQKAATEGFSFGAPTEREVELAETILALVPSCEQIRLVSSGTEAAMSAIRLARGATGRSKLIKFEGCYHGHADALLVKAGSGLATFG 165          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_ERWCT (Glutamate-1-semialdehyde 2,1-aminomutase OS=Erwinia carotovora subsp. atroseptica GN=hemL PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.256e-47
Identity = 87/161 (54.04%), Postives = 115/161 (71.43%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  +  A++L+PGGVNSPVRAF  VGG P+  +   G++++D+D   YIDYVGSWGP ++GH    +  A+    ++G SFGAP  +E  +A +V S VPS++MVR VNSGTEA M  +RLAR +TGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MNKSESLYAAAQQLIPGGVNSPVRAFNGVGGTPLFIERADGAYLYDVDEQAYIDYVGSWGPMVLGHNHPSIRDAVIAAAERGLSFGAPTEMEVQMARLVTSLVPSMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_DESPS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulfotalea psychrophila GN=hemL PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.256e-47
Identity = 90/159 (56.60%), Postives = 118/159 (74.21%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S++ F  AK+++PGGVNSPVRA  SVG  P+  +  +GS+++D DG +Y+D+V SWGP I+GHA   ++ A+ +    GTS+GAP   E  LA MV+ AVPSIE VRFV+SGTEA M  +RLAR +TG+  I +F+GCYHGHAD FLVKAGSGV TLG+
Sbjct:    6 SKKLFAEAKKVIPGGVNSPVRACLSVGCDPLFIERAEGSYIYDADGQKYLDFVNSWGPMIMGHAHPDIIKAIQDAAVYGTSYGAPTSSEVDLASMVVEAVPSIEKVRFVSSGTEATMSAVRLARGYTGKNVIVKFDGCYHGHADSFLVKAGSGVLTLGI 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SHELP (Glutamate-1-semialdehyde 2,1-aminomutase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=hemL PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.252e-47
Identity = 91/161 (56.52%), Postives = 113/161 (70.19%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  F  AK+ +PGGVNSPVRAF  VGG P   +   G++++D DG  YIDYVGSWGP I+GH   ++  A+ + ++ G SFGAP  LE  +AE VI  VPS+E VR V+SGTEA M  +RLAR FT R++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MTRSETLFEQAKKTIPGGVNSPVRAFNGVGGSPRFIEKADGAYIYDADGKAYIDYVGSWGPMILGHNHPKIRQAVLDAVENGLSFGAPTELEVRMAEKVIEMVPSMEQVRMVSSGTEATMSAIRLARGFTNRDKILKFEGCYHGHADCLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PSEP1 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=hemL PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.252e-47
Identity = 88/162 (54.32%), Postives = 118/162 (72.84%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            +  SE  F  A++ +PGGVNSPVRAFKSVGG P+ F   +G+++ D D   Y+DYVGSWGP I+GH    VL ++ + ++ G S+GAP  +E  +A++V S VPS+EMVR V+SGTEA M  +RLAR +TGR+ I +FEGCYHGH+D  LVKAGSG+ T G+
Sbjct:    1 MSRSEALFAQAQKHIPGGVNSPVRAFKSVGGTPLFFKHAEGAYVVDEDDKRYVDYVGSWGPMILGHGHPDVLDSVRKQLEHGLSYGAPTAMETEMADLVCSIVPSMEMVRMVSSGTEATMSAIRLARGYTGRDAIIKFEGCYHGHSDSLLVKAGSGLLTQGV 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PSEPK (Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudomonas putida (strain KT2440) GN=hemL PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.554e-47
Identity = 88/162 (54.32%), Postives = 117/162 (72.22%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            +  SE  F  A++ +PGGVNSPVRAFKSVGG P+ F   +G+++ D D   Y+DYVGSWGP I+GH    VL ++   ++ G S+GAP  +E  +A++V S VPS+EMVR V+SGTEA M  +RLAR +TGR+ I +FEGCYHGH+D  LVKAGSG+ T G+
Sbjct:    1 MSRSEALFAQAQKHIPGGVNSPVRAFKSVGGTPLFFKHAEGAYVVDEDDKRYVDYVGSWGPMILGHGHPDVLDSVRRQLEHGLSYGAPTAMETEMADLVCSIVPSMEMVRMVSSGTEATMSAIRLARGYTGRDAIIKFEGCYHGHSDSLLVKAGSGLLTQGV 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_DESVM (Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=hemL PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.554e-47
Identity = 90/159 (56.60%), Postives = 112/159 (70.44%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S+E F  A++L+PGGVNSPVRA   V   P+     KGSH+  +DG  ++DYV SWGP ++GHA   V +A+   + +GTS+GAPC  E VLAE VI A+P +EMVR VNSGTEA M  LRLAR  TGR ++ +F GCYHGHAD FL  AGSGVATL +
Sbjct:    5 SKELFERAQQLIPGGVNSPVRACLGVDSDPLFVAHAKGSHLTTVDGTSFVDYVQSWGPMLLGHAHPVVASAIHAAVDRGTSYGAPCEDEVVLAEAVIDALPGVEMVRMVNSGTEATMSALRLARGVTGRNKVVKFVGCYHGHADAFLASAGSGVATLSI 163          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_COLP3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=hemL PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.554e-47
Identity = 89/162 (54.94%), Postives = 114/162 (70.37%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            +  SE+ F  A++++PGGVNSPVRAF  VGG P      +G++++D D   YIDYVGSWGP I+GH    +L A+  T K G SFGAP  +E  +AE V   VPS+E +R V+SGTEA M  +RLAR +TGR++I +FEGCYHGHAD  LVKAGSG  TLG+
Sbjct:    1 MNKSEQLFEQAQKIIPGGVNSPVRAFNGVGGTPCFIKRAQGAYIYDADDKAYIDYVGSWGPMILGHNHPAILEAVITTAKNGLSFGAPTEIEITMAEKVRELVPSMESLRMVSSGTEATMSAIRLARGYTGRDKILKFEGCYHGHADALLVKAGSGALTLGV 162          
The following BLAST results are available for this feature:
BLAST of FC876179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_PSEA73.256e-4754.94Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudo... [more]
GSA_MARMS3.256e-4755.56Glutamate-1-semialdehyde 2,1-aminomutase OS=Marino... [more]
GSA_LEPCP3.256e-4754.66Glutamate-1-semialdehyde 2,1-aminomutase OS=Leptot... [more]
GSA_ERWCT3.256e-4754.04Glutamate-1-semialdehyde 2,1-aminomutase OS=Erwini... [more]
GSA_DESPS3.256e-4756.60Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulf... [more]
GSA_SHELP4.252e-4756.52Glutamate-1-semialdehyde 2,1-aminomutase OS=Shewan... [more]
GSA_PSEP14.252e-4754.32Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudo... [more]
GSA_PSEPK5.554e-4754.32Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudo... [more]
GSA_DESVM5.554e-4756.60Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulf... [more]
GSA_COLP35.554e-4754.94Glutamate-1-semialdehyde 2,1-aminomutase OS=Colwel... [more]

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Properties
Property NameValue
Genbank descriptionC32001C05EF DevOvary1 Citrus clementina cDNA clone C32001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876179 ID=FC876179; Name=FC876179; organism=Citrus clementina; type=EST; length=698bp
GACAGTTTCTTATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAG
AGAGTGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTA
GGGCTTTCATGTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGG
ATCCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGA
AAAATTTCACTTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAA
TTGATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGG
TGGTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATA
TCGATGGCAACGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATT
ATTGGTCACGCAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAA
GAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAG
AAATGGTAATCTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAAC
TCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCAC
TGGGAGAGAGAGGATCATNCAATTTGAGGGTTGTTATCATGGCCATGCTG
ATCCATTTCTTGTCAAGGCTGGTAGTGGAGTTGCCACCCTAGGGCTTC
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