FC876179

Overview
NameFC876179
Unique NameFC876179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_RALPJ (Glutamate-1-semialdehyde 2,1-aminomutase OS=Ralstonia pickettii (strain 12J) GN=hemL PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.253e-47
Identity = 93/160 (58.13%), Postives = 109/160 (68.12%), Query Frame = 2
Query:  209 TLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVAT 688
            T   S   F  A++ +PGGVNSPVRAF+SVGG P       G ++WD DG  YIDYVGSWGP I+GHA  +V+ A+ E      SFGAP   E V+AE +   VPSIE VR V+SGTEA M  LRLAR FTGR+ I +FEGCYHGHAD  LVKAGSG+ T
Sbjct:    3 TPSRSAALFERAQKTIPGGVNSPVRAFRSVGGIPRFIAKAAGPYLWDADGTRYIDYVGSWGPMIVGHAHPEVVRAVQEVAADSFSFGAPTEAEVVMAEEICKLVPSIEQVRLVSSGTEATMSALRLARGFTGRDLIVKFEGCYHGHADSLLVKAGSGLLT 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PSEMY (Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudomonas mendocina (strain ymp) GN=hemL PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.253e-47
Identity = 89/162 (54.94%), Postives = 117/162 (72.22%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            +  SE  F  A++ +PGGVNSPVRAF+SVGG P+ F   +G+++ D D   Y+DYVGSWGP I+GH+   VL ++   ++ G S+GAP  LE  +AE+V S VPS+EMVR V+SGTEA M  +RLAR +TGR+ I +FEGCYHGH+D  LVKAGSG  T G+
Sbjct:    1 MSRSEILFANAQKHIPGGVNSPVRAFRSVGGTPLFFKHAEGAYVVDEDDKRYVDYVGSWGPMILGHSHPDVLDSVRRQLQHGLSYGAPTALETEMAELVCSLVPSMEMVRMVSSGTEATMSAIRLARGYTGRDSIIKFEGCYHGHSDSLLVKAGSGALTQGV 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_NITMU (Glutamate-1-semialdehyde 2,1-aminomutase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=hemL PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.253e-47
Identity = 88/161 (54.66%), Postives = 112/161 (69.57%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  +++ F  +++ +PGGVNSPVRAFKSVGG P+ F   +G++ WD D   YIDYVGSWGP I+GHA  +V+ A+    K G +FGAP   E  +AE++   VPSIE VR V+SGTEA M  +RLAR +T R RI +FEGCYHGH D  LVKAGSG  T G
Sbjct:    1 MSRNQQLFEQSQKFIPGGVNSPVRAFKSVGGTPVFFRKGEGAYAWDADDKSYIDYVGSWGPLILGHAHPEVVDAVYAAAKNGLTFGAPTEAELEIAELLCRLVPSIEQVRLVSSGTEATMSAIRLARGYTARNRIIKFEGCYHGHDDALLVKAGSGALTFG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_NEIMF (Glutamate-1-semialdehyde 2,1-aminomutase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=hemL PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.253e-47
Identity = 89/161 (55.28%), Postives = 115/161 (71.43%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  +E  F+ AK ++PGGVNSPVRAF SVGG P      +G+++WD +G  Y DYVGSWGPAI+GHA  +V+ A+ E    G SFGAP   E V+AE +   +PS+E +R V+SGTEA M  +RLAR FTGR++I +FEGCYHGH+D  LVKAGSG+ T G
Sbjct:    1 MNRNEILFDRAKAIIPGGVNSPVRAFGSVGGVPRFIKKAEGAYVWDENGTRYTDYVGSWGPAIVGHAHPEVIEAMREAALGGLSFGAPTEGEIVIAEEIAKIMPSVERLRLVSSGTEATMTAIRLARGFTGRDKIIKFEGCYHGHSDSLLVKAGSGLLTFG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CLOCE (Glutamate-1-semialdehyde 2,1-aminomutase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=hemL PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.253e-47
Identity = 88/160 (55.00%), Postives = 116/160 (72.50%), Query Frame = 2
Query:  218 NSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            +S   F+ AK+++PGGVNSPVRAF++V   P+     KGS ++D++  EYIDYV SWGP I+GH++D +L  +   +  G SFGAP   E  +AEM++S VP +EMVR VNSGTEA M  +RLAR FT R++I +FEGCYHGH+D  LVKAGSGV T G+
Sbjct:    3 SSNGLFDRAKKVIPGGVNSPVRAFRAVDLNPLFISRAKGSKLYDVEEREYIDYVCSWGPMILGHSNDLILKNVENVLHNGLSFGAPVETEVQIAEMIVSMVPGVEMVRMVNSGTEAVMSAIRLARGFTKRDKIIKFEGCYHGHSDSMLVKAGSGVLTAGI 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CAMFF (Glutamate-1-semialdehyde 2,1-aminomutase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=hemL PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.253e-47
Identity = 89/158 (56.33%), Postives = 112/158 (70.89%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            ++ AF  AK  +PGGV+SPVRAF SVG  P+  D   G  ++DI+GNEYIDYV SWGP I GH D  +  A+ +T KKG SFGAPCLLE  LA++V+S  P +  +RFV+SGTEA M  +RLAR ++ +  I +FEGCYHGH+D  LVKAGSG  T G
Sbjct:    3 NKNAFLEAKTYIPGGVDSPVRAFGSVGSDPVFIDHGNGEFLYDIEGNEYIDYVLSWGPLIFGHCDSDIEEAVIKTAKKGLSFGAPCLLETALAKLVLSKFPWLGKIRFVSSGTEATMSAIRLARGYSKKNGIIKFEGCYHGHSDSLLVKAGSGATTFG 160          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_ACIAD (Glutamate-1-semialdehyde 2,1-aminomutase OS=Acinetobacter sp. (strain ADP1) GN=hemL PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.253e-47
Identity = 85/156 (54.49%), Postives = 110/156 (70.51%), Query Frame = 2
Query:  227 EAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            + F  A + +PGGVNSPVRAF  VGG P+     +G+++WD D   Y+DYVGSWGP I+GHA   ++ A+      G SFGAP + E  LA+++   +PSIEMVR  NSGTEA M  +RLAR +TGR++I +FEGCYHGH+D  LVKAGSG+ TLG
Sbjct:    9 QLFEQASKHIPGGVNSPVRAFNGVGGTPVFIKKAQGAYLWDEDDKRYVDYVGSWGPMILGHAHPDIIQAVQTAAVDGLSFGAPTVHETTLADIICDIMPSIEMVRMTNSGTEATMTAIRLARGYTGRDKIVKFEGCYHGHSDSLLVKAGSGLLTLG 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_AQUAE (Glutamate-1-semialdehyde 2,1-aminomutase OS=Aquifex aeolicus GN=hemL PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.473e-47
Identity = 90/159 (56.60%), Postives = 115/159 (72.33%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            +E+ +  A ++MPGGVNSPVRAFK+VGG+PI     +G  +WD +GNEYID++ SWG  I+GHA  +V+ A+ E  +KG SFG     E  LA++V+  VPS+E VRFVNSGTEA M  +RLAR  TGR+ I +FEGCYHGH D  LV AGSGVAT G+
Sbjct:    3 NEKLYREALQVMPGGVNSPVRAFKAVGGKPIFLVKGRGPRVWDAEGNEYIDFLASWGAIILGHAPKKVVKAVQEEAEKGLSFGLTNPHEVTLAKLVVEMVPSVEKVRFVNSGTEATMSAVRLARGVTGRKYIVKFEGCYHGHYDSLLVSAGSGVATFGI 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_VIBCM (Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=hemL PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.237e-46
Identity = 89/161 (55.28%), Postives = 112/161 (69.57%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  S E +  A+  +PGGVNSPVRAF  VGG PI  D   G+ ++D DG  YIDYVGSWGP I+GH    +  A+ +  ++G SFGAP  +E  +AE+V   VPS+E +R VNSGTEA M  +RLAR +TGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MTKSAELYQKAQTTIPGGVNSPVRAFNGVGGSPIFIDRADGALIFDADGKAYIDYVGSWGPMILGHNHAVIREAVIQAAQRGLSFGAPTEMEITMAELVSELVPSMEQLRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_VIBCH (Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio cholerae GN=hemL PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.237e-46
Identity = 89/161 (55.28%), Postives = 112/161 (69.57%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  S E +  A+  +PGGVNSPVRAF  VGG PI  D   G+ ++D DG  YIDYVGSWGP I+GH    +  A+ +  ++G SFGAP  +E  +AE+V   VPS+E +R VNSGTEA M  +RLAR +TGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MTKSAELYQKAQTTIPGGVNSPVRAFNGVGGSPIFIDRADGALIFDADGKAYIDYVGSWGPMILGHNHAVIREAVIQAAQRGLSFGAPTEMEITMAELVSELVPSMEQLRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGALTLG 161          
The following BLAST results are available for this feature:
BLAST of FC876179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_RALPJ7.253e-4758.13Glutamate-1-semialdehyde 2,1-aminomutase OS=Ralsto... [more]
GSA_PSEMY7.253e-4754.94Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudo... [more]
GSA_NITMU7.253e-4754.66Glutamate-1-semialdehyde 2,1-aminomutase OS=Nitros... [more]
GSA_NEIMF7.253e-4755.28Glutamate-1-semialdehyde 2,1-aminomutase OS=Neisse... [more]
GSA_CLOCE7.253e-4755.00Glutamate-1-semialdehyde 2,1-aminomutase OS=Clostr... [more]
GSA_CAMFF7.253e-4756.33Glutamate-1-semialdehyde 2,1-aminomutase OS=Campyl... [more]
GSA_ACIAD7.253e-4754.49Glutamate-1-semialdehyde 2,1-aminomutase OS=Acinet... [more]
GSA_AQUAE9.473e-4756.60Glutamate-1-semialdehyde 2,1-aminomutase OS=Aquife... [more]
GSA_VIBCM1.237e-4655.28Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio... [more]
GSA_VIBCH1.237e-4655.28Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio... [more]

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Properties
Property NameValue
Genbank descriptionC32001C05EF DevOvary1 Citrus clementina cDNA clone C32001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876179 ID=FC876179; Name=FC876179; organism=Citrus clementina; type=EST; length=698bp
GACAGTTTCTTATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAG
AGAGTGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTA
GGGCTTTCATGTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGG
ATCCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGA
AAAATTTCACTTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAA
TTGATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGG
TGGTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATA
TCGATGGCAACGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATT
ATTGGTCACGCAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAA
GAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAG
AAATGGTAATCTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAAC
TCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCAC
TGGGAGAGAGAGGATCATNCAATTTGAGGGTTGTTATCATGGCCATGCTG
ATCCATTTCTTGTCAAGGCTGGTAGTGGAGTTGCCACCCTAGGGCTTC
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