FC876179

Overview
NameFC876179
Unique NameFC876179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_VIBC3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=hemL PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.237e-46
Identity = 89/161 (55.28%), Postives = 112/161 (69.57%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  S E +  A+  +PGGVNSPVRAF  VGG PI  D   G+ ++D DG  YIDYVGSWGP I+GH    +  A+ +  ++G SFGAP  +E  +AE+V   VPS+E +R VNSGTEA M  +RLAR +TGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MTKSAELYQKAQTTIPGGVNSPVRAFNGVGGSPIFIDRADGALIFDADGKAYIDYVGSWGPMILGHNHAVIREAVIQAAQRGLSFGAPTEMEITMAELVSELVPSMEQLRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PECCP (Glutamate-1-semialdehyde 2,1-aminomutase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=hemL PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.237e-46
Identity = 87/161 (54.04%), Postives = 114/161 (70.81%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  +  A++L+PGGVNSPVRAF  VGG P+  +   G++++D D   YIDYVGSWGP ++GH    +  A+    ++G SFGAP  +E  +A +V S VPS++MVR VNSGTEA M  +RLAR +TGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MNKSESLYAAAQQLIPGGVNSPVRAFNGVGGTPLFIERADGAYLYDADEQAYIDYVGSWGPMVLGHNHPAIRDAVIAAAERGLSFGAPTEMEVQMARLVTSLVPSMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_HERAR (Glutamate-1-semialdehyde 2,1-aminomutase OS=Herminiimonas arsenicoxydans GN=hemL PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.237e-46
Identity = 91/159 (57.23%), Postives = 110/159 (69.18%), Query Frame = 2
Query:  218 NSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            N+E  F  A++  PGGVNSPVRAF+SVGG P      +G + WD D   YIDY+GSWGPAI+GHA   V+ A+ +   +G SFGAP   E  +AE++   VPSIE VR V+SGTEA M  LRLAR  TGR+ I +FEGCYHGHAD  LVKAGSG+ T G
Sbjct:    4 NNEILFARAQKSTPGGVNSPVRAFRSVGGTPRFITRAEGPYFWDADDRRYIDYIGSWGPAIVGHAHPDVVKAVQDAATRGLSFGAPTEGEIRMAELICQLVPSIEQVRLVSSGTEAAMSALRLARGATGRDTIIKFEGCYHGHADSLLVKAGSGLLTFG 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_DESOH (Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=hemL PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.237e-46
Identity = 93/156 (59.62%), Postives = 111/156 (71.15%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVAT 688
            S+  F  A  L+PGGVNSPVRA K+VG  P+  D  +G+ + D DGN YIDY+GSWGP I+GH    V+AA+   +K+G SFGA   LE  LA MV  AVPSIEMVR VNSGTEA M  +RLAR  TGR+ + +F+GCYHGHAD  LV AGSGVAT
Sbjct:    6 SKALFKEAAVLIPGGVNSPVRAGKAVGTTPLFIDRAQGAEIVDADGNVYIDYIGSWGPMILGHRHSAVMAAIETVLKRGLSFGASTDLEARLARMVADAVPSIEMVRMVNSGTEATMSAIRLARGITGRDGLVKFDGCYHGHADMLLVDAGSGVAT 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_ACTSZ (Glutamate-1-semialdehyde 2,1-aminomutase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=hemL PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.237e-46
Identity = 87/161 (54.04%), Postives = 114/161 (70.81%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            + NS   F  A++++PGGVNSPVRAFK VGG P+      G+++ D DG +YIDYVGSWGP ++GH    ++ A+ + +  G SFGAP   E  LAE+V   +PSIE+VR V+SGTEA M  +RLAR +T R++I +FEGCYHGH+D  LVKAGSG  TLG
Sbjct:    1 MSNSTALFQRARQVIPGGVNSPVRAFKGVGGTPVFIQKAAGAYITDTDGKQYIDYVGSWGPMVLGHNHPAIIDAVLKAVPNGLSFGAPTEGEITLAELVCRLIPSIELVRMVSSGTEATMSAIRLARGYTKRDKIIKFEGCYHGHSDSLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_VIBVY (Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio vulnificus (strain YJ016) GN=hemL PE=3 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.616e-46
Identity = 89/161 (55.28%), Postives = 113/161 (70.19%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  S E +  A++ +PGGVNSPVRAF  VGG PI  +   G+ ++D DG  YIDYVGSWGP I+GH    +  A+ E  ++G SFGAP  +E  +AE+V   VPS+E +R V+SGTEA M  +RLAR FTGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MTKSAELYQKAQQTIPGGVNSPVRAFNGVGGSPIFVERADGAFIFDADGKAYIDYVGSWGPMILGHNHAVIREAVIEAAQRGLSFGAPTEMEIKMAELVSELVPSMEQLRMVSSGTEATMSAIRLARGFTGRDKILKFEGCYHGHADSLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_VIBVU (Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio vulnificus GN=hemL PE=3 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.616e-46
Identity = 89/161 (55.28%), Postives = 113/161 (70.19%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  S E +  A++ +PGGVNSPVRAF  VGG PI  +   G+ ++D DG  YIDYVGSWGP I+GH    +  A+ E  ++G SFGAP  +E  +AE+V   VPS+E +R V+SGTEA M  +RLAR FTGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MTKSAELYQKAQQTIPGGVNSPVRAFNGVGGSPIFVERADGAFIFDADGKAYIDYVGSWGPMILGHNHAVIREAVIEAAQRGLSFGAPTEMEIKMAELVSELVPSMEQLRMVSSGTEATMSAIRLARGFTGRDKILKFEGCYHGHADSLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SULDN (Glutamate-1-semialdehyde 2,1-aminomutase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=hemL PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.616e-46
Identity = 89/162 (54.94%), Postives = 117/162 (72.22%), Query Frame = 2
Query:  209 TLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            ++ NS +AF  A+ L+PGGVNSPVRAFKSVGG P+   +  G+++ DIDGN Y+D+V SWGP + GH D+ + +A+ E +K G SFGAP   E+ LA +VIS   SIE +RFV+SGTEA M  +RLAR +T  + I +F GCYHGH+D  LV+AGSG AT G
Sbjct:    2 SIDNSLKAFKEAQNLIPGGVNSPVRAFKSVGGTPLFIANGSGAYLTDIDGNRYVDFVQSWGPLLFGHRDESIESAVIEAVKHGLSFGAPTQAESDLAALVISMFDSIEKIRFVSSGTEAVMSAIRLARGYTNCDDIVKFTGCYHGHSDSLLVQAGSGAATFG 163          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_RUTMC (Glutamate-1-semialdehyde 2,1-aminomutase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=hemL PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.616e-46
Identity = 88/162 (54.32%), Postives = 114/162 (70.37%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            +  SE  F  AK ++PGGVNSPVRAF  VGG PI F   +G++++D D  +YIDYV SWG  I+GH +  V+ A+  T++ G  FGAP  +E  LAE V   +PSIE+VR V+SGTEA M  +RLAR  TGR++I +FEGCYHGH+D  L+KAGSG  TLG+
Sbjct:    1 MNQSETLFAQAKTVIPGGVNSPVRAFNGVGGSPIFFTRGEGAYLFDEDDKKYIDYVASWGSMILGHTNQAVIIAVKTTLENGLGFGAPTQIETKLAEKVCELMPSIELVRMVSSGTEATMSAIRLARGHTGRDKIIKFEGCYHGHSDSLLIKAGSGALTLGV 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_JANMA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Janthinobacterium sp. (strain Marseille) GN=hemL PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.616e-46
Identity = 89/158 (56.33%), Postives = 110/158 (69.62%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +++ F  A+   PGGVNSPVRAF+SVGG P      +G + WD D   YIDY+GSWGPAI+GHA   V+ A+ +   +G SFGAP   E  +AE++   VPSIE VR V+SGTEA M  LRLAR  TGR++I +FEGCYHGHAD  LVKAGSG+ T G
Sbjct:    5 NDQLFARAQLSTPGGVNSPVRAFRSVGGTPRFITKAEGPYFWDADDRRYIDYIGSWGPAIVGHAHPDVVKAVQDAATRGLSFGAPTEAEIEMAELICRLVPSIEQVRLVSSGTEAAMSALRLARGATGRDKIIKFEGCYHGHADSLLVKAGSGLLTFG 162          
The following BLAST results are available for this feature:
BLAST of FC876179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_VIBC31.237e-4655.28Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio... [more]
GSA_PECCP1.237e-4654.04Glutamate-1-semialdehyde 2,1-aminomutase OS=Pectob... [more]
GSA_HERAR1.237e-4657.23Glutamate-1-semialdehyde 2,1-aminomutase OS=Hermin... [more]
GSA_DESOH1.237e-4659.62Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulf... [more]
GSA_ACTSZ1.237e-4654.04Glutamate-1-semialdehyde 2,1-aminomutase OS=Actino... [more]
GSA_VIBVY1.616e-4655.28Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio... [more]
GSA_VIBVU1.616e-4655.28Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio... [more]
GSA_SULDN1.616e-4654.94Glutamate-1-semialdehyde 2,1-aminomutase OS=Sulfur... [more]
GSA_RUTMC1.616e-4654.32Glutamate-1-semialdehyde 2,1-aminomutase OS=Ruthia... [more]
GSA_JANMA1.616e-4656.33Glutamate-1-semialdehyde 2,1-aminomutase OS=Janthi... [more]

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Properties
Property NameValue
Genbank descriptionC32001C05EF DevOvary1 Citrus clementina cDNA clone C32001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876179 ID=FC876179; Name=FC876179; organism=Citrus clementina; type=EST; length=698bp
GACAGTTTCTTATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAG
AGAGTGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTA
GGGCTTTCATGTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGG
ATCCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGA
AAAATTTCACTTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAA
TTGATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGG
TGGTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATA
TCGATGGCAACGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATT
ATTGGTCACGCAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAA
GAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAG
AAATGGTAATCTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAAC
TCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCAC
TGGGAGAGAGAGGATCATNCAATTTGAGGGTTGTTATCATGGCCATGCTG
ATCCATTTCTTGTCAAGGCTGGTAGTGGAGTTGCCACCCTAGGGCTTC
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