FC876179

Overview
NameFC876179
Unique NameFC876179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_DELAS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=hemL PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.110e-46
Identity = 88/154 (57.14%), Postives = 111/154 (72.08%), Query Frame = 2
Query:  233 FNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            F  AK ++PGGVNSPVRAF +VGG P      +G+H WD +  ++ DY+GSWGP I+GH   +V+AA+     +G SFGAP   E VLAE ++S +PS++MVR V+SGTEA M  LRLAR FTGR +I +F GCYHGHAD  LVKAGSG+AT G
Sbjct:   16 FERAKAVIPGGVNSPVRAFNAVGGTPRFVRRAQGAHFWDENAQQFTDYIGSWGPMILGHGHPEVMAAVQAAALEGFSFGAPTEREVVLAEKILSLMPSMDMVRMVSSGTEAGMSALRLARGFTGRNKIIKFNGCYHGHADALLVKAGSGLATFG 169          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SHEAM (Glutamate-1-semialdehyde 2,1-aminomutase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=hemL PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.756e-46
Identity = 89/161 (55.28%), Postives = 112/161 (69.57%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  F  AK+ +PGGVNSPVRAF  VGG P   +   G++++D DG  YIDYVGSWGP I+GH    +  A+ + +  G SFGAP  LE ++AE VI  VPS++ VR V+SGTEA M  +RLAR +T R++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MTRSETLFEQAKKTIPGGVNSPVRAFNGVGGTPRFIEKADGAYIYDADGKAYIDYVGSWGPMILGHNHPSIREAVLKAVHNGLSFGAPTELEVIMAEKVIEMVPSMDQVRMVSSGTEATMSAIRLARGYTKRDKILKFEGCYHGHADCLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PHOLL (Glutamate-1-semialdehyde 2,1-aminomutase OS=Photorhabdus luminescens subsp. laumondii GN=hemL PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.756e-46
Identity = 85/161 (52.80%), Postives = 115/161 (71.43%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  S+  ++ AK+L+PGGVNSPVRAF  VGG P+      G++++D+DG  YIDYVGSWGP ++GH    +  A+ +  ++G SFGAP   E  +A++V   VPS++MVR VNSGTEA M  +RLAR +T R++I +FEGCYHGHAD  LVKAGSG  T+G
Sbjct:    1 MSQSDILYSQAKQLIPGGVNSPVRAFNGVGGTPLFIKHADGAYLYDVDGKAYIDYVGSWGPMVLGHNHSAIRNAVIKAAEQGLSFGAPTAAEVEMAQLVTELVPSMDMVRMVNSGTEATMSAIRLARGYTHRDKIIKFEGCYHGHADCLLVKAGSGALTIG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_METCA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Methylococcus capsulatus GN=hemL PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.756e-46
Identity = 85/159 (53.46%), Postives = 114/159 (71.70%), Query Frame = 2
Query:  218 NSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +S   F  A   +PGGVNSPVRAF+ VGG P+  D  +G +++ +DG  YIDYVGSWGP I+GHA  +VL A+   + +G S+GAP + E  +A+ V + +PS++ VR V+SGTEA M  +RLAR +TGR++I +FEGCYHGH+D  LVKAGSG  TLG
Sbjct:    3 DSTTLFADACRFIPGGVNSPVRAFRGVGGTPVFVDRAEGPYVYGVDGKAYIDYVGSWGPMILGHAHPEVLTAVHAAVDRGLSYGAPTVAETAMAKTVCALMPSLDRVRMVSSGTEATMSAIRLARGYTGRDKIVKFEGCYHGHSDSLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CYTH3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=hemL PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.756e-46
Identity = 83/161 (51.55%), Postives = 116/161 (72.05%), Query Frame = 2
Query:  215 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            K S   F+ AKE++PGGVNSPVRAF++VGG P+      G+++ D D N+YI+ + SWGP I+GH ++ +  A+ + +    SFGAP   E  +AE+++S VPS+EMVR VNSGTEA M  +R+AR +TG+E+I +FEGCYHGH D FL+ AGSG  T+G+
Sbjct:    4 KTSAGLFSRAKEVIPGGVNSPVRAFRAVGGNPLFIKRAHGAYLVDEDDNQYIELINSWGPMILGHGNELIEKAVRDALSNSLSFGAPSRKEVEMAELIVSMVPSVEMVRMVNSGTEATMSAIRVARGYTGKEKIIKFEGCYHGHGDSFLIAAGSGAVTMGV 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_NEIMA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Neisseria meningitidis serogroup A GN=hemL PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.600e-46
Identity = 88/161 (54.66%), Postives = 114/161 (70.81%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  +E  F+ AK ++PGGVNSPVRAF SVGG P      +G+++WD +G  Y DYVGSWGPAI+GHA  +V+ A+ E    G SFGAP   E  +AE +   +PS+E +R V+SGTEA M  +RLAR FTGR++I +FEGCYHGH+D  LVKAGSG+ T G
Sbjct:    1 MNRNEILFDRAKAVIPGGVNSPVRAFGSVGGVPRFIKKAEGAYVWDENGTRYTDYVGSWGPAIVGHAHPEVIEAVREAALGGLSFGAPTEGEIAIAEEIAKIMPSVERLRLVSSGTEATMTAIRLARGFTGRDKIIKFEGCYHGHSDSLLVKAGSGLLTFG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_ERWT9 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=hemL PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.600e-46
Identity = 86/161 (53.42%), Postives = 114/161 (70.81%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  +  A++L+PGGVNSPVRAF  VGG P+  +   G++++D DG  YIDYVGSWGP ++GH    +  A+ +  ++G SFGAP  +E  +A +V   VP+++MVR VNSGTEA M  +RLAR FT R++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MSKSENLYAQAQQLIPGGVNSPVRAFNGVGGVPLFIERANGAYLYDADGKAYIDYVGSWGPMVLGHNHPAIRNAVIDAAERGLSFGAPTEMEVKMAALVTELVPTMDMVRMVNSGTEATMSAIRLARGFTHRDKIIKFEGCYHGHADCLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_NEIMB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Neisseria meningitidis serogroup B GN=hemL PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.701e-46
Identity = 88/161 (54.66%), Postives = 114/161 (70.81%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  +E  F+ AK ++PGGVNSPVRAF SVGG P      +G+++WD +G  Y DYVGSWGPAI+GHA  +V+  + E    G SFGAP   E V+AE +   +PS+E +R V+SGTEA M  +RLAR FTGR++I +FEGCYHGH+D  LVKAGSG+ T G
Sbjct:    1 MNRNEILFDRAKAIIPGGVNSPVRAFGSVGGVPRFIKKAEGAYVWDENGTRYTDYVGSWGPAIVGHAHPEVVETVCEAALGGLSFGAPTEGEIVIAEEIAKIMPSVERLRLVSSGTEATMTAIRLARGFTGRDKIIKFEGCYHGHSDSLLVKAGSGLLTFG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_METPP (Glutamate-1-semialdehyde 2,1-aminomutase OS=Methylibium petroleiphilum (strain PM1) GN=hemL PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.701e-46
Identity = 89/154 (57.79%), Postives = 107/154 (69.48%), Query Frame = 2
Query:  233 FNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            F  A+  +PGGVNSPVRAF++VGG P       G+++WD DG  YIDY+GSWGP I+GH    VL A+ +   +G SFGAP   E  LAE ++  VPS E VR V+SGTEA M  LRLAR  TGR +I +FEGCYHGHAD  LVKAGSG+AT G
Sbjct:   10 FERARRSIPGGVNSPVRAFRAVGGTPRFIARADGAYLWDADGKRYIDYIGSWGPMILGHGHPAVLEAVQKAATEGFSFGAPTEREVELAEEILKLVPSAEQVRLVSSGTEAAMSALRLARGATGRSKIVKFEGCYHGHADALLVKAGSGLATFG 163          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_HELP2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Helicobacter pylori (strain P12) GN=hemL PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.701e-46
Identity = 89/161 (55.28%), Postives = 116/161 (72.05%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            L +S   FN AK+++ GGVNSPVRAFKSV G P      KG++++D+D N YID+V SWGP I GHAD+++   +  T+KKGTSFGAP  LE  LA+ +IS    ++ VR VNSGTEA M  +RLARA++ ++ + +FEGCYHGH+D  LVKAGSG AT G
Sbjct:    3 LLHSINDFNEAKQVIAGGVNSPVRAFKSVKGTPPFILKGKGAYLYDVDNNHYIDFVQSWGPLIFGHADEEIEENIINTLKKGTSFGAPTELETTLAKEIISCYEGLDKVRLVNSGTEATMSAIRLARAYSQKDDLIKFEGCYHGHSDSLLVKAGSGCATFG 163          
The following BLAST results are available for this feature:
BLAST of FC876179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_DELAS2.110e-4657.14Glutamate-1-semialdehyde 2,1-aminomutase OS=Delfti... [more]
GSA_SHEAM2.756e-4655.28Glutamate-1-semialdehyde 2,1-aminomutase OS=Shewan... [more]
GSA_PHOLL2.756e-4652.80Glutamate-1-semialdehyde 2,1-aminomutase OS=Photor... [more]
GSA_METCA2.756e-4653.46Glutamate-1-semialdehyde 2,1-aminomutase OS=Methyl... [more]
GSA_CYTH32.756e-4651.55Glutamate-1-semialdehyde 2,1-aminomutase OS=Cytoph... [more]
GSA_NEIMA3.600e-4654.66Glutamate-1-semialdehyde 2,1-aminomutase OS=Neisse... [more]
GSA_ERWT93.600e-4653.42Glutamate-1-semialdehyde 2,1-aminomutase OS=Erwini... [more]
GSA_NEIMB4.701e-4654.66Glutamate-1-semialdehyde 2,1-aminomutase OS=Neisse... [more]
GSA_METPP4.701e-4657.79Glutamate-1-semialdehyde 2,1-aminomutase OS=Methyl... [more]
GSA_HELP24.701e-4655.28Glutamate-1-semialdehyde 2,1-aminomutase OS=Helico... [more]

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Properties
Property NameValue
Genbank descriptionC32001C05EF DevOvary1 Citrus clementina cDNA clone C32001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876179 ID=FC876179; Name=FC876179; organism=Citrus clementina; type=EST; length=698bp
GACAGTTTCTTATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAG
AGAGTGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTA
GGGCTTTCATGTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGG
ATCCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGA
AAAATTTCACTTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAA
TTGATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGG
TGGTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATA
TCGATGGCAACGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATT
ATTGGTCACGCAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAA
GAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAG
AAATGGTAATCTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAAC
TCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCAC
TGGGAGAGAGAGGATCATNCAATTTGAGGGTTGTTATCATGGCCATGCTG
ATCCATTTCTTGTCAAGGCTGGTAGTGGAGTTGCCACCCTAGGGCTTC
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