FC876179

Overview
NameFC876179
Unique NameFC876179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_DICNV (Glutamate-1-semialdehyde 2,1-aminomutase OS=Dichelobacter nodosus (strain VCS1703A) GN=hemL PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.701e-46
Identity = 87/158 (55.06%), Postives = 114/158 (72.15%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            ++ AF  A  ++PGGVNSPVRAFKSVGG+PI     +G++++D++G  YIDYVGS+GP I GHA  +++AA+    + G S+GAP  LE  LAE +++ VPS+EMVR  NSGTEA M  +RLARA T R +I +F GCYHGH+D  LV AGSG  T G
Sbjct:    2 TDSAFTRAARVIPGGVNSPVRAFKSVGGEPIFIARAEGAYLYDVNGRRYIDYVGSYGPMINGHAHPEIVAAVCRASRNGMSYGAPNELETELAEKIVARVPSVEMVRMCNSGTEATMSAIRLARAATNRTQILKFAGCYHGHSDALLVSAGSGALTFG 159          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_DESDA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=hemL PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.701e-46
Identity = 87/159 (54.72%), Postives = 114/159 (71.70%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S + F  A+ ++PGGVNSPVRA  +V  QP+      G H+ D+DG +YID+V SWGP I+GH +  V  A+ +   +GTS+GAPC  E +LAE V++A+PS+EMVR VNSGTEA M  LRLARA T R+++ +F GCYHGHADPFL  AGSG+AT  +
Sbjct:    5 SRQLFEKAQAVIPGGVNSPVRACHNVDSQPLFIAEAHGCHLTDVDGRQYIDFVLSWGPMILGHDEPSVTRAVCDAAHRGTSYGAPCPDEVLLAEAVVAAMPSLEMVRMVNSGTEATMSALRLARAATRRDKVLKFVGCYHGHADPFLAAAGSGLATFSI 163          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_XYLFT (Glutamate-1-semialdehyde 2,1-aminomutase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=hemL PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.140e-46
Identity = 88/159 (55.35%), Postives = 108/159 (67.92%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S   F  A+  +PGGVNSPVRAF+SVGG+P       G +++D+DG+ YIDYVGSWGP I+GH    V  A+   +  G S+GAPC  E  +AE +   VPS EMVR VNSGTEA +  +RLAR  TGR  I +FEGCYHGH D FLVK GSG+ TLG+
Sbjct:    6 SHALFVQAQTRIPGGVNSPVRAFRSVGGEPFFVARADGPYLFDVDGHRYIDYVGSWGPMIVGHNHPAVREAVQVAISNGLSYGAPCAAEVTMAETIARLVPSCEMVRMVNSGTEATLSAIRLARGATGRNYIVKFEGCYHGHGDSFLVKGGSGMLTLGI 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_XYLF2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Xylella fastidiosa (strain M23) GN=hemL PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.140e-46
Identity = 88/159 (55.35%), Postives = 108/159 (67.92%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S   F  A+  +PGGVNSPVRAF+SVGG+P       G +++D+DG+ YIDYVGSWGP I+GH    V  A+   +  G S+GAPC  E  +AE +   VPS EMVR VNSGTEA +  +RLAR  TGR  I +FEGCYHGH D FLVK GSG+ TLG+
Sbjct:    6 SHALFVQAQTRIPGGVNSPVRAFRSVGGEPFFVARADGPYLFDVDGHRYIDYVGSWGPMIVGHNHPAVREAVQVAISNGLSYGAPCAAEVTMAETIARLVPSCEMVRMVNSGTEATLSAIRLARGATGRNYIVKFEGCYHGHGDSFLVKGGSGMLTLGI 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PSEHT (Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=hemL PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.140e-46
Identity = 88/159 (55.35%), Postives = 112/159 (70.44%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S++ F  A+  +PGGVNSPVRAF  VGG P+     +G+  +D DGN YIDYVGSWGP I+GH    +  A+ + ++ G S+GAP   E ++AE V   VPSIE VR V+SGTEA M  +RLAR FTGR++I +FEGCYHGHAD  LVKAGSG  T+G+
Sbjct:    4 SQDLFARAQASIPGGVNSPVRAFNGVGGTPLFITKAEGAFTFDADGNRYIDYVGSWGPMIMGHNHPAIKQAVHDAVENGLSYGAPTEAEILMAEKVKELVPSIEKVRMVSSGTEATMSAIRLARGFTGRDKILKFEGCYHGHADSLLVKAGSGALTMGV 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_HELPG (Glutamate-1-semialdehyde 2,1-aminomutase OS=Helicobacter pylori (strain G27) GN=hemL PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.140e-46
Identity = 88/161 (54.66%), Postives = 116/161 (72.05%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            L +S   FN AK+++ GGVNSPVRAFKSV G P      KG++++D+D N YID+V SWGP I GHAD+++   +  T+KKGTSFGAP  LE  LA+ ++S    ++ VR VNSGTEA M  +RLARA++ ++ + +FEGCYHGH+D  LVKAGSG AT G
Sbjct:    3 LLHSINDFNEAKQVIAGGVNSPVRAFKSVKGTPPFILKGKGAYLYDVDNNHYIDFVQSWGPLIFGHADEEIEKNIINTLKKGTSFGAPTELETTLAKEIVSCYEGLDKVRLVNSGTEATMSAIRLARAYSQKDDLIKFEGCYHGHSDSLLVKAGSGCATFG 163          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_XYLFA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Xylella fastidiosa GN=hemL PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.019e-46
Identity = 87/159 (54.72%), Postives = 108/159 (67.92%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S   F  A+  +PGGVNSPVRAF+SVGG+P       G +++D+DG+ YIDYVGSWGP I+GH    V  A+   +  G S+GAPC  E  +AE +   VPS +MVR VNSGTEA +  +RLAR  TGR  I +FEGCYHGH D FLVK GSG+ TLG+
Sbjct:    6 SHTLFVQAQTRIPGGVNSPVRAFRSVGGEPFFVARADGPYLFDVDGHRYIDYVGSWGPMIVGHNHPAVREAVQVAISNGLSYGAPCAAEVTMAETIARLVPSCDMVRMVNSGTEATLSAIRLARGATGRNHIVKFEGCYHGHGDSFLVKGGSGMLTLGM 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SORC5 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Sorangium cellulosum (strain So ce56) GN=hemL PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.019e-46
Identity = 90/158 (56.96%), Postives = 113/158 (71.52%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            S+  F+ A  ++PGGVNSPVRAF++VGG P+     +G+ ++D DG EYIDYVGSWGPAI+GHA   V+ A+ E    G SFGAP  LE   AE +    PSI+M+R V+SGTEA M  +R+AR FT R+ I +FEGCYHGHAD  LVKAGSG+AT G
Sbjct:   18 SKALFDRAAAVLPGGVNSPVRAFRAVGGDPLFIARAQGARLFDADGAEYIDYVGSWGPAILGHAHPAVIEAVREAALGGLSFGAPTELEVRFAEKIRELYPSIDMLRCVSSGTEATMSAIRVARGFTRRDAIIKFEGCYHGHADHLLVKAGSGLATFG 175          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_XYLFM (Glutamate-1-semialdehyde 2,1-aminomutase OS=Xylella fastidiosa (strain M12) GN=hemL PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.047e-45
Identity = 88/159 (55.35%), Postives = 108/159 (67.92%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S   F  A+  +PGGVNSPVRAF+SVGG+P       G +++D+DG+ YIDYVGSWGP I+GH    V  A+   +  G S+GAPC  E  +AE +   VPS +MVR VNSGTEA +  +RLAR  TGR  I +FEGCYHGH D FLVK GSG+ TLGL
Sbjct:    6 SHALFVQAQTRIPGGVNSPVRAFRSVGGEPFFVARADGPYLFDVDGHRYIDYVGSWGPMIVGHNHPGVREAVQVAISNGLSYGAPCAAEVTMAETIARLVPSCQMVRMVNSGTEATLSAIRLARGATGRNYIVKFEGCYHGHGDSFLVKGGSGMLTLGL 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_THET2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=hemL PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.047e-45
Identity = 91/159 (57.23%), Postives = 114/159 (71.70%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            SE  F  AK  +PGGV+SPVRAFK+VGG P      +G+++WD DGN Y+DYV SWGP I+GHA  +VLA + ET+++G +FGAP  LE  LA+ V  A P +++VRFVNSGTEA M  LRLAR +T R  I +F G YHGHAD  LV+AGSG  TLG+
Sbjct:    9 SEAYFQEAKRHIPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLERGLTFGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTNRPYIVKFRGNYHGHADGLLVEAGSGALTLGV 167          
The following BLAST results are available for this feature:
BLAST of FC876179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_DICNV4.701e-4655.06Glutamate-1-semialdehyde 2,1-aminomutase OS=Dichel... [more]
GSA_DESDA4.701e-4654.72Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulf... [more]
GSA_XYLFT6.140e-4655.35Glutamate-1-semialdehyde 2,1-aminomutase OS=Xylell... [more]
GSA_XYLF26.140e-4655.35Glutamate-1-semialdehyde 2,1-aminomutase OS=Xylell... [more]
GSA_PSEHT6.140e-4655.35Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudo... [more]
GSA_HELPG6.140e-4654.66Glutamate-1-semialdehyde 2,1-aminomutase OS=Helico... [more]
GSA_XYLFA8.019e-4654.72Glutamate-1-semialdehyde 2,1-aminomutase OS=Xylell... [more]
GSA_SORC58.019e-4656.96Glutamate-1-semialdehyde 2,1-aminomutase OS=Sorang... [more]
GSA_XYLFM1.047e-4555.35Glutamate-1-semialdehyde 2,1-aminomutase OS=Xylell... [more]
GSA_THET21.047e-4557.23Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermu... [more]

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Properties
Property NameValue
Genbank descriptionC32001C05EF DevOvary1 Citrus clementina cDNA clone C32001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876179 ID=FC876179; Name=FC876179; organism=Citrus clementina; type=EST; length=698bp
GACAGTTTCTTATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAG
AGAGTGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTA
GGGCTTTCATGTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGG
ATCCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGA
AAAATTTCACTTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAA
TTGATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGG
TGGTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATA
TCGATGGCAACGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATT
ATTGGTCACGCAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAA
GAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAG
AAATGGTAATCTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAAC
TCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCAC
TGGGAGAGAGAGGATCATNCAATTTGAGGGTTGTTATCATGGCCATGCTG
ATCCATTTCTTGTCAAGGCTGGTAGTGGAGTTGCCACCCTAGGGCTTC
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