FC876179

Overview
NameFC876179
Unique NameFC876179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_THEM4 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=hemL PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.047e-45
Identity = 91/154 (59.09%), Postives = 112/154 (72.73%), Query Frame = 2
Query:  233 FNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            F  AKE MPGGVNSPVRAFKSV   PI   S KGS + DI+ NEYIDY+ SWG  I+GH+ + V+ A+ E  +KGTS+G    LE  +A++++  +PSIEMVR VNSGTEA M  +RLARA+T R+ I +FEGCYHGH+D  LVKAGSG  T G
Sbjct:    2 FEKAKEFMPGGVNSPVRAFKSVELDPIFVKSAKGSKIKDINNNEYIDYIQSWGALILGHSHEVVINAINEQSQKGTSYGLCHPLEVEMAQILVENIPSIEMVRMVNSGTEAVMSAIRLARAYTKRDFIVKFEGCYHGHSDSLLVKAGSGALTFG 155          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PSYWF (Glutamate-1-semialdehyde 2,1-aminomutase OS=Psychrobacter sp. (strain PRwf-1) GN=hemL PE=3 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 1.047e-45
Identity = 84/158 (53.16%), Postives = 111/158 (70.25%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +E+ F  AK+ +PGGVNSPVRAF  VGG P+      GS ++D + NEYIDYVGSWGP I+GHA  +V+ A+      G SFG P   E  +A+++   VPS+EM+R  +SGTEA M  +RLAR +TGR++I +FEGCYHGH+D  LVKAGSG+  +G
Sbjct:    5 NEQLFLQAKKHIPGGVNSPVRAFAGVGGTPVFMHKAAGSKIYDTEDNEYIDYVGSWGPMILGHAHPKVIEAVKAAADDGLSFGTPTTFETSVADIICDIVPSVEMIRMTSSGTEATMSAIRLARGYTGRDKIVKFEGCYHGHSDSLLVKAGSGMLDIG 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PSYIN (Glutamate-1-semialdehyde 2,1-aminomutase OS=Psychromonas ingrahamii (strain 37) GN=hemL PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.047e-45
Identity = 85/158 (53.80%), Postives = 115/158 (72.78%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            S + F+ A+ ++PGGVNSP RAF  VGG P+  +  +G++++D+D   YIDYVGSWGP I+GH   ++ AA+   ++ G SFGAP  +E ++AE V S VPS+E VR V+SGTEA M  +RLAR +TGR++I +FEG YHGH+D  LVKAGSG  TLG
Sbjct:    4 SNQLFDRAQAIIPGGVNSPARAFNGVGGDPLFIEKAQGAYIYDVDKKSYIDYVGSWGPMILGHNHPEIKAAVIAAVENGLSFGAPTEIEIIMAEKVKSLVPSMEQVRMVSSGTEATMSAIRLARGYTGRDKILKFEGNYHGHSDSLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PHOPR (Glutamate-1-semialdehyde 2,1-aminomutase OS=Photobacterium profundum GN=hemL PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.047e-45
Identity = 87/161 (54.04%), Postives = 114/161 (70.81%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  S + F  A++++PGGVNSPVRAF  VGG P+  +   G++++D DG  YIDYVGSWGP I+GH    V  A+ +  ++G SFGAP  +E  +AE+V   VPS+E +R V+SGTEA M  +RLAR FT R++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MSKSADLFAKAQKIIPGGVNSPVRAFAGVGGSPLFIERADGAYIFDADGKAYIDYVGSWGPMILGHNHVAVRDAVIKAAQQGLSFGAPTEMEITMAELVSKLVPSMEQIRMVSSGTEATMSAIRLARGFTNRDKIIKFEGCYHGHADCLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA1_CLOPH (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.047e-45
Identity = 86/162 (53.09%), Postives = 114/162 (70.37%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            +  SEE F  A +++PGGVNSPVRAF SVG  P      +G+H++D+DG EYIDY+ SWGP I+GH    +L ++ +  + G SFGA   +E  +A+++   VPSIEMVR VNSGTEA M  +R+AR +TGR +I +F GCYHGH+D  LVKAGSGV T G+
Sbjct:    1 MTRSEELFKEALKVIPGGVNSPVRAFGSVGESPRFIKRAEGAHLYDVDGKEYIDYICSWGPMILGHNHPDILESVVQACQNGLSFGAVTEMEVKMAKLICELVPSIEMVRMVNSGTEAVMSAIRVARGYTGRNKIIKFNGCYHGHSDGLLVKAGSGVMTAGV 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_STRSV (Glutamate-1-semialdehyde 2,1-aminomutase OS=Streptococcus sanguinis (strain SK36) GN=hemL PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.368e-45
Identity = 86/161 (53.42%), Postives = 116/161 (72.05%), Query Frame = 2
Query:  215 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            ++S + F  A++L PGGVNSPVRAFK+VGG P+  +   G+++ D+DGN YIDYV SWGP I+GHA   VL A+ E + +GTSFGAP   E  L ++V   +P +E +R VNSGTEA M  +R+AR  T R +I +F GCYHGH+D FLV+AGSG+A+ G+
Sbjct:    4 EHSNQYFTEAQKLFPGGVNSPVRAFKAVGGHPLFIEKASGAYLHDVDGNRYIDYVLSWGPMILGHAPKDVLPAVEEAIWEGTSFGAPSPREIALGQLVQERLPFMERMRMVNSGTEATMSAIRVARGVTKRSKIVKFIGCYHGHSDSFLVQAGSGLASFGI 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_HELPH (Glutamate-1-semialdehyde 2,1-aminomutase OS=Helicobacter pylori (strain HPAG1) GN=hemL PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.368e-45
Identity = 88/161 (54.66%), Postives = 115/161 (71.43%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            L +S   FN AK+++ GGVNSPVRAFKSV G P      KG++++D+D N YID+V SWGP I GHAD+++   +  T+KKGTSFGAP  LE  LA+ +IS    ++ VR VNSGTEA M  +RLARA++ ++ + +FEGCYHGH+D  LVKAGSG  T G
Sbjct:    3 LLHSINDFNEAKQVIAGGVNSPVRAFKSVKGTPPFILKGKGAYLYDVDNNHYIDFVQSWGPLIFGHADEEIEENIINTLKKGTSFGAPTELETTLAKEIISCYEGLDKVRLVNSGTEATMSAIRLARAYSQKDDLIKFEGCYHGHSDSLLVKAGSGCVTFG 163          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_COXBU (Glutamate-1-semialdehyde 2,1-aminomutase OS=Coxiella burnetii GN=hemL PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.368e-45
Identity = 91/160 (56.88%), Postives = 108/160 (67.50%), Query Frame = 2
Query:  218 NSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            +S   FN A+  MPGGVNSPVRAF +VGG P       G ++ D+D  +YIDYVGSWGP I+GHA   V+ A  E ++ G SFGAPC  E  LA ++   +PSIE VR VNSGTEA M  LRLAR  TGR +I +FEGCYHGHAD  LV AGSG  T G+
Sbjct:    4 HSAALFNKAQNYMPGGVNSPVRAFGAVGGVPRFIKKASGPYLIDVDEKKYIDYVGSWGPMILGHAHPAVIQAAQEAVQNGLSFGAPCENEIKLAALIGEFMPSIEKVRMVNSGTEATMSALRLARGVTGRSKIIKFEGCYHGHADCLLVNAGSGALTFGM 163          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_COXBR (Glutamate-1-semialdehyde 2,1-aminomutase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=hemL PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.368e-45
Identity = 91/160 (56.88%), Postives = 108/160 (67.50%), Query Frame = 2
Query:  218 NSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            +S   FN A+  MPGGVNSPVRAF +VGG P       G ++ D+D  +YIDYVGSWGP I+GHA   V+ A  E ++ G SFGAPC  E  LA ++   +PSIE VR VNSGTEA M  LRLAR  TGR +I +FEGCYHGHAD  LV AGSG  T G+
Sbjct:    4 HSAALFNKAQNYMPGGVNSPVRAFGAVGGVPRFIKKASGPYLIDVDEKKYIDYVGSWGPMILGHAHPAVIQAAQEAVQNGLSFGAPCENEIKLAALIGEFMPSIEKVRMVNSGTEATMSALRLARGVTGRSKIIKFEGCYHGHADCLLVNAGSGALTFGM 163          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_COXBN (Glutamate-1-semialdehyde 2,1-aminomutase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=hemL PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.368e-45
Identity = 91/160 (56.88%), Postives = 108/160 (67.50%), Query Frame = 2
Query:  218 NSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            +S   FN A+  MPGGVNSPVRAF +VGG P       G ++ D+D  +YIDYVGSWGP I+GHA   V+ A  E ++ G SFGAPC  E  LA ++   +PSIE VR VNSGTEA M  LRLAR  TGR +I +FEGCYHGHAD  LV AGSG  T G+
Sbjct:    4 HSAALFNKAQNYMPGGVNSPVRAFGAVGGVPRFIKKASGPYLIDVDEKKYIDYVGSWGPMILGHAHPAVIQAAQEAVQNGLSFGAPCENEIKLAALIGEFMPSIEKVRMVNSGTEATMSALRLARGVTGRSKIIKFEGCYHGHADCLLVNAGSGALTFGM 163          
The following BLAST results are available for this feature:
BLAST of FC876179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_THEM41.047e-4559.09Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermo... [more]
GSA_PSYWF1.047e-4553.16Glutamate-1-semialdehyde 2,1-aminomutase OS=Psychr... [more]
GSA_PSYIN1.047e-4553.80Glutamate-1-semialdehyde 2,1-aminomutase OS=Psychr... [more]
GSA_PHOPR1.047e-4554.04Glutamate-1-semialdehyde 2,1-aminomutase OS=Photob... [more]
GSA1_CLOPH1.047e-4553.09Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Clos... [more]
GSA_STRSV1.368e-4553.42Glutamate-1-semialdehyde 2,1-aminomutase OS=Strept... [more]
GSA_HELPH1.368e-4554.66Glutamate-1-semialdehyde 2,1-aminomutase OS=Helico... [more]
GSA_COXBU1.368e-4556.88Glutamate-1-semialdehyde 2,1-aminomutase OS=Coxiel... [more]
GSA_COXBR1.368e-4556.88Glutamate-1-semialdehyde 2,1-aminomutase OS=Coxiel... [more]
GSA_COXBN1.368e-4556.88Glutamate-1-semialdehyde 2,1-aminomutase OS=Coxiel... [more]

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Properties
Property NameValue
Genbank descriptionC32001C05EF DevOvary1 Citrus clementina cDNA clone C32001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876179 ID=FC876179; Name=FC876179; organism=Citrus clementina; type=EST; length=698bp
GACAGTTTCTTATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAG
AGAGTGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTA
GGGCTTTCATGTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGG
ATCCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGA
AAAATTTCACTTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAA
TTGATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGG
TGGTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATA
TCGATGGCAACGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATT
ATTGGTCACGCAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAA
GAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAG
AAATGGTAATCTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAAC
TCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCAC
TGGGAGAGAGAGGATCATNCAATTTGAGGGTTGTTATCATGGCCATGCTG
ATCCATTTCTTGTCAAGGCTGGTAGTGGAGTTGCCACCCTAGGGCTTC
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