FC876179

Overview
NameFC876179
Unique NameFC876179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_ACIC5 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=hemL PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.158e-44
Identity = 85/152 (55.92%), Postives = 112/152 (73.68%), Query Frame = 2
Query:  242 AKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            A+ L+PGGV+SPVRAF++VGG+P      +G+ +WD DGN+Y+DY GSWGP I+GHA   V+ A+ +     TSFGA    E  LAE+V+ A PS+E +RFV+SGTEA M  LRLARA+T R+ I +F+GCYHGH+D  L KAGSG+AT G+
Sbjct:   11 AERLLPGGVDSPVRAFRAVGGEPPFLVKAEGACLWDADGNQYLDYFGSWGPMILGHAFPPVIEAIQKQAAFSTSFGASTPSEGDLAELVVRAYPSMEKLRFVSSGTEATMSALRLARAYTKRKYIVKFDGCYHGHSDGLLAKAGSGLATFGI 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_RENSM (Glutamate-1-semialdehyde 2,1-aminomutase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=hemL PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.512e-44
Identity = 86/162 (53.09%), Postives = 115/162 (70.99%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            + +S+E F+ A+ELMPGGVNSPVRAF SVGG P    S +G+++ D DG +Y+D V SWGPA++GHA  +V+AA+   + +G SFGA    E  LAE+V+  V ++E +R V++GTEA M  +RLAR FTGR  I +F GCYHGH D  L  AGSG+ATL +
Sbjct:    1 MTSSQELFDHARELMPGGVNSPVRAFGSVGGTPRFITSAQGAYLTDADGRDYVDLVCSWGPALLGHAHPEVIAAVHAAVDRGLSFGASTPAETELAELVLGRVSAVERLRMVSTGTEATMTAVRLARGFTGRNLIVKFAGCYHGHVDSLLAAAGSGLATLAM 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA2_CLOPH (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.512e-44
Identity = 85/162 (52.47%), Postives = 112/162 (69.14%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            +  SE+ F  A + +PGGVNSPVRAF SVGG P   +S  G++++D+DGN+YIDY+ SWGP I+GH  + +  A+ E  +KG S+GA    E  +AE++   VP  EMVR VNSGTEA M  +R AR +T R +I +FEGCYHGH+D  LVKAGSGV   G+
Sbjct:    1 MTKSEQLFERAVKHLPGGVNSPVRAFLSVGGSPRFIESADGAYIYDVDGNKYIDYINSWGPMILGHNHEVIRTAVIEAAQKGLSYGAATEAEVEMAELLCEIVPCFEMVRMVNSGTEAVMSAIRAARGYTKRNKIIKFEGCYHGHSDGLLVKAGSGVMVAGI 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_RHOFD (Glutamate-1-semialdehyde 2,1-aminomutase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=hemL PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.975e-44
Identity = 84/159 (52.83%), Postives = 111/159 (69.81%), Query Frame = 2
Query:  218 NSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            N++  F  AK ++PGGVNSPVRAFK+VGG P      +G++ WD +   Y D++GSWGP I+GH    V+ A+   + +G S+GAP   E  LAE ++  VPS++MVR V+SGTEA M  +RLAR  TGR ++ +FEGCYHGHAD  LVKAGSG+AT G
Sbjct:    7 NNQILFERAKRVIPGGVNSPVRAFKAVGGTPRFVKRAQGAYFWDANNQRYTDFIGSWGPMILGHGHPAVVEAVQAAVLEGFSYGAPTEREVELAEEILRLVPSMDMVRLVSSGTEAAMSTIRLARGATGRSKLIKFEGCYHGHADALLVKAGSGLATFG 165          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_HELPS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Helicobacter pylori (strain Shi470) GN=hemL PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.975e-44
Identity = 86/161 (53.42%), Postives = 114/161 (70.81%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            L +S   FN AK+++ GGVNSPVRAFKSV G P      KG++++D+D N YID+V SWGP I GHAD+++   +   +KKGTSFG P  LE  LA+ +IS    ++ VR V+SGTEA M  +RLARA++ ++ + +FEGCYHGH+D  LVKAGSG AT G
Sbjct:    3 LLHSINDFNEAKQVIAGGVNSPVRAFKSVKGTPPFILKGKGAYLYDVDNNHYIDFVQSWGPLIFGHADEEIEENIINVLKKGTSFGTPTELETTLAKEIISCYEGLDKVRLVSSGTEATMSAIRLARAYSQKDDLIKFEGCYHGHSDSLLVKAGSGCATFG 163          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CAMHC (Glutamate-1-semialdehyde 2,1-aminomutase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=hemL PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.975e-44
Identity = 81/159 (50.94%), Postives = 118/159 (74.21%), Query Frame = 2
Query:  218 NSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            ++ + F+ A +++PGGV+SPVRAFK+VG +P +    KG++++DI+GN+Y+D+V SWGP I GHAD  +  A+ +T K G SFGA   LE  LA++++S    ++ +RFV+SGTEA M  +RLAR F+G+++I +FEGCYHGH+D  LVKAGSG  T G
Sbjct:    2 SNHKEFSEALKVIPGGVDSPVRAFKNVGSEPFMVQKGKGAYIYDIEGNKYLDFVQSWGPLIFGHADKDIQDAVIKTAKSGLSFGASSPLETKLAKLILSKFDWLDKIRFVSSGTEATMSAIRLARGFSGKDKIIKFEGCYHGHSDSLLVKAGSGATTFG 160          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA1_BACHD (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Bacillus halodurans GN=hemL1 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.975e-44
Identity = 84/159 (52.83%), Postives = 112/159 (70.44%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGG-QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            SE  F  A+ L+ GGVNSP R+FK+VGG  P+  +  KG++ WD+DGN+YIDY+ ++GP I GHA   +  A+    + G  +G P  LEN  A M+  A+PS+E VRFVNSGTEA M  +R+ARA+TGR++I +F GCYHGH+D  LV AGSG +TLG
Sbjct:    6 SESLFQKAQSLIVGGVNSPSRSFKAVGGGAPVFMEKAKGAYFWDVDGNQYIDYLAAYGPIITGHAHPHITNAIQRAAENGVLYGTPTKLENQFASMLQQAIPSLEKVRFVNSGTEAVMTTIRVARAYTGRDKIIKFAGCYHGHSDLVLVAAGSGPSTLG 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CAMJR (Glutamate-1-semialdehyde 2,1-aminomutase OS=Campylobacter jejuni (strain RM1221) GN=hemL PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.580e-44
Identity = 84/156 (53.85%), Postives = 112/156 (71.79%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVAT 688
            +++AF  A + + GGVNSPVRAF +V  +P      KG++++DIDGN YIDYV SWGP + GH D  +  A  + + KG+SFGAP LLE  LA++V+S  P +E +RFV+SGTEA M  +RLAR FT +++I +FEGCYHGH+D  LV AGSG AT
Sbjct:    3 NKKAFKEACKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIFDIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDFPHLEKIRFVSSGTEATMSAIRLARGFTKKDKILKFEGCYHGHSDSLLVSAGSGAAT 158          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CAMJJ (Glutamate-1-semialdehyde 2,1-aminomutase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=hemL PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.580e-44
Identity = 84/156 (53.85%), Postives = 112/156 (71.79%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVAT 688
            +++AF  A + + GGVNSPVRAF +V  +P      KG++++DIDGN YIDYV SWGP + GH D  +  A  + + KG+SFGAP LLE  LA++V+S  P +E +RFV+SGTEA M  +RLAR FT +++I +FEGCYHGH+D  LV AGSG AT
Sbjct:    3 NKKAFKEACKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIFDIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDFPHLEKIRFVSSGTEATMSAIRLARGFTKKDKILKFEGCYHGHSDSLLVSAGSGAAT 158          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CAMJD (Glutamate-1-semialdehyde 2,1-aminomutase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=hemL PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.580e-44
Identity = 84/156 (53.85%), Postives = 112/156 (71.79%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVAT 688
            +++AF  A + + GGVNSPVRAF +V  +P      KG++++DIDGN YIDYV SWGP + GH D  +  A  + + KG+SFGAP LLE  LA++V+S  P +E +RFV+SGTEA M  +RLAR FT +++I +FEGCYHGH+D  LV AGSG AT
Sbjct:    3 NKKAFKEACKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIFDIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDFPHLEKIRFVSSGTEATMSAIRLARGFTKKDKILKFEGCYHGHSDSLLVSAGSGAAT 158          
The following BLAST results are available for this feature:
BLAST of FC876179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_ACIC51.158e-4455.92Glutamate-1-semialdehyde 2,1-aminomutase OS=Acidob... [more]
GSA_RENSM1.512e-4453.09Glutamate-1-semialdehyde 2,1-aminomutase OS=Reniba... [more]
GSA2_CLOPH1.512e-4452.47Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Clos... [more]
GSA_RHOFD1.975e-4452.83Glutamate-1-semialdehyde 2,1-aminomutase OS=Rhodof... [more]
GSA_HELPS1.975e-4453.42Glutamate-1-semialdehyde 2,1-aminomutase OS=Helico... [more]
GSA_CAMHC1.975e-4450.94Glutamate-1-semialdehyde 2,1-aminomutase OS=Campyl... [more]
GSA1_BACHD1.975e-4452.83Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Baci... [more]
GSA_CAMJR2.580e-4453.85Glutamate-1-semialdehyde 2,1-aminomutase OS=Campyl... [more]
GSA_CAMJJ2.580e-4453.85Glutamate-1-semialdehyde 2,1-aminomutase OS=Campyl... [more]
GSA_CAMJD2.580e-4453.85Glutamate-1-semialdehyde 2,1-aminomutase OS=Campyl... [more]

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Properties
Property NameValue
Genbank descriptionC32001C05EF DevOvary1 Citrus clementina cDNA clone C32001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876179 ID=FC876179; Name=FC876179; organism=Citrus clementina; type=EST; length=698bp
GACAGTTTCTTATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAG
AGAGTGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTA
GGGCTTTCATGTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGG
ATCCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGA
AAAATTTCACTTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAA
TTGATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGG
TGGTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATA
TCGATGGCAACGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATT
ATTGGTCACGCAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAA
GAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAG
AAATGGTAATCTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAAC
TCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCAC
TGGGAGAGAGAGGATCATNCAATTTGAGGGTTGTTATCATGGCCATGCTG
ATCCATTTCTTGTCAAGGCTGGTAGTGGAGTTGCCACCCTAGGGCTTC
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