FC876184

Overview
NameFC876184
Unique NameFC876184
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9382 contig Ccv1_Contig9382:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB2G_ARATH (ABC transporter G family member 2 OS=Arabidopsis thaliana GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 2
Query:  365 SSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK--PSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 667
            SS + + LLN +SGEA+ G ++A++G SGSGK+TL++ LA ++       L G + +NG+   SS +    AYV Q+DL F  LTV ETL  +AE +LP  LS
Sbjct:  126 SSVNTKILLNGISGEAREGEMMAVLGASGSGKSTLIDALANRIAKD---SLRGSITLNGEVLESSMQKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPRSLS 225          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB1G_ARATH (ABC transporter G family member 1 OS=Arabidopsis thaliana GN=ABCG1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.181e-15
Identity = 43/106 (40.57%), Postives = 66/106 (62.26%), Query Frame = 2
Query:  353 LSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF--AYVRQEDLFFSQLTVRETLSLAAELQLPEIL 664
            ++  +    + LLNN+SGE + G ++A++G SGSGK+TL++ LA ++       L G +++NG+   ++  K   AYV Q+DL F  LTV ETL  AAE +LP  L
Sbjct:   98 IAQTARPKTKTLLNNISGETRDGEIMAVLGASGSGKSTLIDALANRIAKG---SLKGTVKLNGETLQSRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSL 200          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: ADP1_YEAST (Probable ATP-dependent permease OS=Saccharomyces cerevisiae GN=ADP1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.508e-14
Identity = 51/118 (43.22%), Postives = 73/118 (61.86%), Query Frame = 2
Query:  323 TIR*QNITCSLSDKSSKSVR-FLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 667
            T+  +NIT S+   +S  V   +LN +SG  KPG++LAIMG SG+GKTTLL++LA   M     H+SG ++VNG     K++     +V Q+D     LTV ET+  +A L+LP+ LS
Sbjct:  383 TLSFENITYSVPSINSDGVEETVLNEISGIVKPGQILAIMGGSGAGKTTLLDILA---MKRKTGHVSGSIKVNGISMDRKSFSKIIGFVDQDDFLLPTLTVFETVLNSALLRLPKALS 497          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB16G_ARATH (ABC transporter G family member 16 OS=Arabidopsis thaliana GN=ABCG16 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.508e-14
Identity = 44/102 (43.14%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  365 SSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF--AYVRQEDLFFSQLTVRETLSLAAELQLPEIL 664
            S    + LL+N+SGE + G +LA++G SGSGK+TL++ LA ++       L G + +NG+   ++  K   AYV Q+DL F  LTV ETL  AAE +LP  L
Sbjct:  100 SFSKTKTLLDNISGETRDGEILAVLGASGSGKSTLIDALANRIAKG---SLKGTVTLNGEALQSRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSL 198          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB20G_ARATH (ABC transporter G family member 20 OS=Arabidopsis thaliana GN=ABCG20 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.969e-14
Identity = 43/100 (43.00%), Postives = 65/100 (65.00%), Query Frame = 2
Query:  374 SVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF--AYVRQEDLFFSQLTVRETLSLAAELQLPEILS 667
            + + LLN +SGEA+ G ++A++G SGSGK+TL++ LA ++    +  L G + +NG+   +  +K   AYV Q+DL F  LTV ETL  +AE +LP  LS
Sbjct:  122 NTKVLLNGISGEAREGEMMAVLGASGSGKSTLIDALANRI---SKESLRGDITLNGEVLESSLHKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPSSLS 218          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB18G_ARATH (ABC transporter G family member 18 OS=Arabidopsis thaliana GN=ABCG18 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.358e-14
Identity = 45/106 (42.45%), Postives = 70/106 (66.04%), Query Frame = 2
Query:  356 SDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG-KPSSNKAYKF--AYVRQEDLFFSQLTVRETLSLAAELQLPEIL 664
            S + + SV+ LL++++GEA+ G +LA++G SG+GK+TL++ LAG++       L G + +NG K   ++  K   AYV Q+DL F  LTV+ETL  A+E +LP  L
Sbjct:   81 SRRKTASVKTLLDDITGEARDGEILAVLGGSGAGKSTLIDALAGRVAED---SLKGTVTLNGEKVLQSRLLKVISAYVMQDDLLFPMLTVKETLMFASEFRLPRSL 183          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB25G_ARATH (ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 44/101 (43.56%), Postives = 64/101 (63.37%), Query Frame = 2
Query:  368 SKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVN-GKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 667
            S   R +L+ V+G   PG  +A++GPSGSGK+TLLN +AG+L  S   +L+G + +N GK +     +  +V Q+DL +  LTVRETL   A L+LP  L+
Sbjct:   77 STEERTILSGVTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGS---NLTGKILINDGKITKQTLKRTGFVAQDDLLYPHLTVRETLVFVALLRLPRSLT 174          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: WHITE_DROME (Protein white OS=Drosophila melanogaster GN=w PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.729e-14
Identity = 45/98 (45.92%), Postives = 61/98 (62.24%), Query Frame = 2
Query:  380 RFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY--KFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 667
            + LL NV G A PG LLA+MG SG+GKTTLLN LA +     ++  SG+  +NG+P   K    + AYV+Q+DLF   LT RE L   A +++P  L+
Sbjct:  110 KHLLKNVCGVAYPGELLAVMGSSGAGKTTLLNALAFRSPQGIQVSPSGMRLLNGQPVDAKEMQARCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHLT 207          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB24G_ARATH (ABC transporter G family member 24 OS=Arabidopsis thaliana GN=ABCG24 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 2
Query:  386 LLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 667
            +L  V+G  KPGR+ A+MGPSG+GKT+LL+ LAG+ +      LSGL+ +NGK  S  +YK    +V Q+D+    LTV E L   A+ +LP  LS
Sbjct:  493 VLRCVTGSMKPGRITAVMGPSGAGKTSLLSALAGKAVG---CKLSGLILINGKQESIHSYKKIIGFVPQDDVVHGNLTVEENLWFHAKCRLPADLS 585          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB19G_ARATH (ABC transporter G family member 19 OS=Arabidopsis thaliana GN=ABCG19 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 46/100 (46.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:  377 VRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG-KPSSNKAYKF--AYVRQEDLFFSQLTVRETLSLAAELQLPEILS 667
            V+ LL++VSGEA  G +LA++G SG+GK+TL++ LAG++       L G + +NG K   ++  K   AYV Q+DL F  LTV+ETL  A+E +LP  LS
Sbjct:   96 VKTLLDDVSGEASDGDILAVLGASGAGKSTLIDALAGRVAEG---SLRGSVTLNGEKVLQSRLLKVISAYVMQDDLLFPMLTVKETLMFASEFRLPRSLS 192          
The following BLAST results are available for this feature:
BLAST of FC876184 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
AB2G_ARATH3.967e-1544.66ABC transporter G family member 2 OS=Arabidopsis t... [more]
AB1G_ARATH5.181e-1540.57ABC transporter G family member 1 OS=Arabidopsis t... [more]
ADP1_YEAST1.508e-1443.22Probable ATP-dependent permease OS=Saccharomyces c... [more]
AB16G_ARATH1.508e-1443.14ABC transporter G family member 16 OS=Arabidopsis ... [more]
AB20G_ARATH1.969e-1443.00ABC transporter G family member 20 OS=Arabidopsis ... [more]
AB18G_ARATH3.358e-1442.45ABC transporter G family member 18 OS=Arabidopsis ... [more]
AB25G_ARATH4.386e-1443.56ABC transporter G family member 25 OS=Arabidopsis ... [more]
WHITE_DROME5.729e-1445.92Protein white OS=Drosophila melanogaster GN=w PE=1... [more]
AB24G_ARATH1.276e-1345.83ABC transporter G family member 24 OS=Arabidopsis ... [more]
AB19G_ARATH1.276e-1346.00ABC transporter G family member 19 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC32001D01EF DevOvary1 Citrus clementina cDNA clone C32001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876184 ID=FC876184; Name=FC876184; organism=Citrus clementina; type=EST; length=671bp
GCTACTCCAGTTGCACTGCTGCAACGGAGGCTAAGCAACAAGAAGATAAA
GTTAAAATTAAATTTTATAAATAAAAAAGACAAAAATGGTGAATTTTGGA
GGGAATAAGGTGGGCCAAGTGGTGGCAGGAATTGGCGGGAACGGCGTAGG
CCAGGTACTGGCAGCCGTTGCCGTCTCTCTTTTGTTCCGCTTGTTTACTG
GACCTGGTCCGGCATTGGTAACAGATGACGACTCTGCCTATGGTGACGAC
GATGAAAGAAACGACGTCGCAGAAGCTAATGGTGACGGTGAAGCTCCGGT
TGACGGCAAAGTCTTCCCGGTCACCATCCGTTGACAAAACATCACTTGCT
CCCTGTCCGATAAATCCTCAAAATCAGTGCGGTTTCTTCTAAATAATGTG
AGTGGAGAGGCGAAACCTGGAAGATTATTGGCGATAATGGGACCGTCAGG
GTCAGGGAAAACAACGTTGCTGAATGTTCTGGCGGGTCAGTTAATGGCAT
CGCCACGATTACATTTATCCGGCCTATTGGAAGTCAATGGAAAACCTAGT
TCAAACAAAGCTTATAAGTTTGCCTATGTGAGACAGGAGGATCTTTTTTT
CTCTCAGTTGACAGTGCGGGAAACACTCTCTCTTGCAGCTGAACTTCAGC
TTCCAGAAATACTTTCTGTGG
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