FC876184

Overview
NameFC876184
Unique NameFC876184
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9382 contig Ccv1_Contig9382:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: WHITE_LUCCU (Protein white OS=Lucilia cuprina GN=W PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.177e-13
Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  371 KSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY--KFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 667
            K  + L+ NV G A PG LLA+MG SG+GKTTLLN LA +     ++  S +  +NG P   K    + AYV+Q+DLF   LT RE L   A +++P  ++
Sbjct:   96 KPRKHLIKNVCGVAYPGELLAVMGSSGAGKTTLLNALAFRSARGVQISPSSVRMLNGHPVDAKEMQARCAYVQQDDLFIGSLTAREHLIFQATVRMPRTMT 196          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: ABCG6_DICDI (ABC transporter G family member 6 OS=Dictyostelium discoideum GN=abcG6 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.843e-13
Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:  362 KSSKSVRF-LLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF-AYVRQEDLFFSQLTVRETLSLAAELQLP 655
            K  KS R  LL ++ G  KPG++LA+MGPSG+GK+TLL+VLA +       H++G + +NGKP S    +  AYV Q D+     TVRE ++ +A  +LP
Sbjct:  933 KKKKSQRLQLLTDIDGYVKPGQMLALMGPSGAGKSTLLDVLAQRKTGG---HITGEILINGKPPSEFTNRIRAYVEQMDVLPPTQTVREAIAFSARCRLP 1029          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: ABCG5_DICDI (ABC transporter G family member 5 OS=Dictyostelium discoideum GN=abcG5 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.843e-13
Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:  362 KSSKSVRF-LLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF-AYVRQEDLFFSQLTVRETLSLAAELQLP 655
            K  KS R  LL ++ G  KPG++LA+MGPSG+GK+TLL+VLA +       H++G + +NGKP S    +  AYV Q D+     TVRE ++ +A  +LP
Sbjct:  908 KKKKSQRLQLLTDIDGYVKPGQMLALMGPSGAGKSTLLDVLAQRKTGG---HITGEILINGKPPSEFTNRIRAYVEQMDVLPPTQTVREAIAFSARCRLP 1004          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB9G_ARATH (ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.843e-13
Identity = 54/151 (35.76%), Postives = 80/151 (52.98%), Query Frame = 2
Query:  251 DERNDVAEANGDGEAPVDGKVF-----PVTIR*QNITCSLSDKSSKSV---------RFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLP 655
            D    +A+ N D   P    +F     PVT++ +N+  ++  K S+           R +L  ++G  KPG +LA++GPSGSGKT+LL  L G+ +   +  L+G +  N KP S KA K    +V Q+D  +  LTV ETL   A L+LP
Sbjct:    9 DVETPIAKTNDDRSLPFS--IFKKANNPVTLKFENLVYTVKLKDSQGCFGKNDKTEERTILKGLTGIVKPGEILAMLGPSGSGKTSLLTALGGR-VGEGKGKLTGNISYNNKPLS-KAVKRTTGFVTQDDALYPNLTVTETLVFTALLRLP 155          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: CDR3_CANAL (Opaque-specific ABC transporter CDR3 OS=Candida albicans GN=CDR3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.850e-13
Identity = 46/113 (40.71%), Postives = 67/113 (59.29%), Query Frame = 2
Query:  335 QNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVN-GKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV 670
            +N+T ++  KS +  R +LNN+ G  KPG + A+MG SG+GKTTLLN L+ +L     +  SG   VN G+  S+      YV+Q+DL     TVRE L  +A L+ P  +S+
Sbjct:  843 RNLTYTVKIKSEE--RVILNNIDGWVKPGEVTALMGASGAGKTTLLNALSERLTTG--VITSGTRMVNGGELDSSFQRSIGYVQQQDLHLETSTVREALKFSARLRQPNSVSI 951          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB26G_ARATH (ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.850e-13
Identity = 41/97 (42.27%), Postives = 60/97 (61.86%), Query Frame = 2
Query:  380 RFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 667
            + +L  ++G   PG +LA+MGPSGSGKTTLL ++ G+L      ++ G L  N  P S +   +  +V Q+D+   QLTV ETL+ AA L+LP  +S
Sbjct:  104 KHILKGITGSTGPGEILALMGPSGSGKTTLLKIMGGRLTD----NVKGKLTYNDIPYSPSVKRRIGFVTQDDVLLPQLTVEETLAFAAFLRLPSSMS 196          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: ABCGC_DICDI (ABC transporter G family member 12 OS=Dictyostelium discoideum GN=abcG12 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.334e-13
Identity = 56/162 (34.57%), Postives = 82/162 (50.62%), Query Frame = 2
Query:  260 NDVAEANGDGEA----------PVDGKVFPVTIR*QNITCSLSDKSSKSVRF-------------LLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV 670
            N+++ ANGD +            VD K +   ++ Q      +D  S +                +LNNVSG  + G L+A+MGPSGSGK+TLL++LA +        ++G L VNGK    +AYK   +YV QED+     TV ETL   A+L+LP +  +
Sbjct:    8 NNISLANGDSKGVQLTFKNIVYKVDNKKYKKLVKKQEKAKKKNDTESSTGDMNTGVSTTIEKELTILNNVSGVIEKGELVALMGPSGSGKSTLLDILAQRKSTG---KITGQLLVNGK-EIGEAYKKYCSYVTQEDVLLQTSTVFETLKFYADLKLPGVSEI 165          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: ABCG1_DICDI (ABC transporter G family member 1 OS=Dictyostelium discoideum GN=abcG1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.334e-13
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:  362 KSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLP 655
            K  K  + +L N++G  + G + AIMGPSG+GKTTLL++LA +L     ++ SG + +NG  S    +K    YV Q D     LTVRETL+  A+L++P
Sbjct:  130 KKKKISKQILTNINGHIESGTIFAIMGPSGAGKTTLLDILAHRL----NINGSGTMYLNGNKSDFNIFKKLCGYVTQSDSLMPSLTVRETLNFYAQLKMP 225          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: ABCGM_DICDI (ABC transporter G family member 22 OS=Dictyostelium discoideum GN=abcG22 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.272e-13
Identity = 45/114 (39.47%), Postives = 69/114 (60.53%), Query Frame = 2
Query:  320 VTIR*QNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF-AYVRQEDLFFSQLTVRETLSLAAELQLPE 658
            +TI  +++  S++ K  K    +L  VSG   PG L+A+ GPSGSGKTTLL++LA +  +     +SG + +NG    +   +  +YV QED+    +TVRETL   A+L+LP+
Sbjct:   29 LTITFKDLAYSVTVKKKKMQ--ILKGVSGTVTPGELVAVFGPSGSGKTTLLDILANRKESG---EISGAVLINGNEIDDDYKRLCSYVVQEDVLLPTITVRETLRFYADLKLPK 137          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: SNQ2_YEAST (Protein SNQ2 OS=Saccharomyces cerevisiae GN=SNQ2 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.080e-12
Identity = 59/188 (31.38%), Postives = 99/188 (52.66%), Query Frame = 2
Query:  146 VGQVLAAVAVSLLFRLFTGPGPALVTDDDS----AYGDD---DERNDV-------AEANGDGEAPVDGKVFPVTIR*QNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 664
            +G V+  V  +   R   G G AL+    S    A+ D+   D  ND+       +E++G  +   D          +++  ++  +  K  R LL+NVSG   PG + A+MG SG+GKTTLLN LA + +      ++G + VNG+P  ++   +  YV+Q+D+  ++LTVRE+L  +A ++ P+ L
Sbjct:  779 LGYVVLKVIFTEYKRPVKGGGDALIFKKGSKRFIAHADEESPDNVNDIDAKEQFSSESSGANDEVFDDLEAKGVFIWKDVCFTIPYEGGK--RMLLDNVSGYCIPGTMTALMGESGAGKTTLLNTLAQRNVGI----ITGDMLVNGRPIDASFERRTGYVQQQDIHIAELTVRESLQFSARMRRPQHL 960          
The following BLAST results are available for this feature:
BLAST of FC876184 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
WHITE_LUCCU2.177e-1342.57Protein white OS=Lucilia cuprina GN=W PE=2 SV=2[more]
ABCG6_DICDI2.843e-1344.00ABC transporter G family member 6 OS=Dictyostelium... [more]
ABCG5_DICDI2.843e-1344.00ABC transporter G family member 5 OS=Dictyostelium... [more]
AB9G_ARATH2.843e-1335.76ABC transporter G family member 9 OS=Arabidopsis t... [more]
CDR3_CANAL4.850e-1340.71Opaque-specific ABC transporter CDR3 OS=Candida al... [more]
AB26G_ARATH4.850e-1342.27ABC transporter G family member 26 OS=Arabidopsis ... [more]
ABCGC_DICDI6.334e-1334.57ABC transporter G family member 12 OS=Dictyosteliu... [more]
ABCG1_DICDI6.334e-1342.00ABC transporter G family member 1 OS=Dictyostelium... [more]
ABCGM_DICDI8.272e-1339.47ABC transporter G family member 22 OS=Dictyosteliu... [more]
SNQ2_YEAST1.080e-1231.38Protein SNQ2 OS=Saccharomyces cerevisiae GN=SNQ2 P... [more]

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Properties
Property NameValue
Genbank descriptionC32001D01EF DevOvary1 Citrus clementina cDNA clone C32001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876184 ID=FC876184; Name=FC876184; organism=Citrus clementina; type=EST; length=671bp
GCTACTCCAGTTGCACTGCTGCAACGGAGGCTAAGCAACAAGAAGATAAA
GTTAAAATTAAATTTTATAAATAAAAAAGACAAAAATGGTGAATTTTGGA
GGGAATAAGGTGGGCCAAGTGGTGGCAGGAATTGGCGGGAACGGCGTAGG
CCAGGTACTGGCAGCCGTTGCCGTCTCTCTTTTGTTCCGCTTGTTTACTG
GACCTGGTCCGGCATTGGTAACAGATGACGACTCTGCCTATGGTGACGAC
GATGAAAGAAACGACGTCGCAGAAGCTAATGGTGACGGTGAAGCTCCGGT
TGACGGCAAAGTCTTCCCGGTCACCATCCGTTGACAAAACATCACTTGCT
CCCTGTCCGATAAATCCTCAAAATCAGTGCGGTTTCTTCTAAATAATGTG
AGTGGAGAGGCGAAACCTGGAAGATTATTGGCGATAATGGGACCGTCAGG
GTCAGGGAAAACAACGTTGCTGAATGTTCTGGCGGGTCAGTTAATGGCAT
CGCCACGATTACATTTATCCGGCCTATTGGAAGTCAATGGAAAACCTAGT
TCAAACAAAGCTTATAAGTTTGCCTATGTGAGACAGGAGGATCTTTTTTT
CTCTCAGTTGACAGTGCGGGAAACACTCTCTCTTGCAGCTGAACTTCAGC
TTCCAGAAATACTTTCTGTGG
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