FC876184

Overview
NameFC876184
Unique NameFC876184
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9382 contig Ccv1_Contig9382:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: CDR4_CANAL (ABC transporter CDR4 OS=Candida albicans GN=CDR4 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.080e-12
Identity = 43/97 (44.33%), Postives = 61/97 (62.89%), Query Frame = 2
Query:  380 RFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 667
            R +L++VSG  KPG++ A+MG SG+GKTTLLN L+ +L     +   G+  VNG+P  S+      YV+Q+DL     TVRE L  AA L+ P+ +S
Sbjct:  862 RVILDHVSGWVKPGQVTALMGASGAGKTTLLNALSDRLTTG--VVTEGIRLVNGRPLDSSFQRSIGYVQQQDLHLETSTVREALEFAAYLRQPKSVS 956          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: ABCGO_DICDI (ABC transporter G family member 24 OS=Dictyostelium discoideum GN=abcG24 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.080e-12
Identity = 46/117 (39.32%), Postives = 73/117 (62.39%), Query Frame = 2
Query:  338 NITCSLSDKSS---KSVRF--LLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFA-YVRQEDLFFSQLTVRETLSLAAELQLPEILSV 670
            NI+C ++++S    K V+   +L+NV+G   PG+L A+MG SGSGKT+LL++L+G+       ++ G + +NG P      + + YV Q+D+    LT RE L  AA L+LPE +S+
Sbjct:  458 NISCYVNERSGFFGKDVKRKQILDNVNGVCPPGQLTALMGLSGSGKTSLLDILSGRKNVG---NIDGKVLINGAPVGKNFKRISGYVTQDDIQIGTLTCREHLMFAALLKLPENMSL 571          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: ABCG4_DICDI (ABC transporter G family member 4 OS=Dictyostelium discoideum GN=abcG4 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.080e-12
Identity = 42/94 (44.68%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  386 LLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF--AYVRQEDLFFSQLTVRETLSLAAELQLPEI 661
            +L+NVSG  + G ++A+MGPSGSGK+TLL++LA +        ++G + VNGK    +AYK   +YV QE++F    TV ETL   A+L+LP++
Sbjct:  235 ILSNVSGIVEKGEMVALMGPSGSGKSTLLDILANRKSTGT---ITGKILVNGK-EIGEAYKMFCSYVTQEEVFLETSTVYETLKFHADLRLPDM 324          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB11G_ARATH (ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.080e-12
Identity = 40/91 (43.96%), Postives = 60/91 (65.93%), Query Frame = 2
Query:  386 LLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 658
            +L  ++G A+PG L A+MGPSGSGK+T+L+ LA +L A+    LSG + +NG+ +       AYV Q+D     LTVRET+  +A ++LP+
Sbjct:   69 VLEGLTGYAEPGSLTALMGPSGSGKSTMLDALASRLAAN--AFLSGTVLLNGRKTKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPD 157          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: WHT3_CAEEL (ABC transporter ATP-binding protein/permease wht-3 OS=Caenorhabditis elegans GN=wht-3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12
Identity = 47/116 (40.52%), Postives = 69/116 (59.48%), Query Frame = 2
Query:  311 VFPVTIR*QNITCSLSDKS-SKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG-KPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQL 652
            V P+T+  +NI      K  SK  + LLN VSG AKPG ++A+MG SG+GKTTL+NVL  + M    L  +G ++VNG K     +    + +Q+++F   LTV E L + A L++
Sbjct:   30 VTPITVTWENIEVKTRKKLFSKKQKQLLNRVSGIAKPGEMVALMGASGAGKTTLMNVLMCRNMKG--LEKNGTVKVNGTKIGKEISLISGFAQQQEIFIPTLTVDEYLMIQARLRM 143          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB28G_ARATH (ABC transporter G family member 28 OS=Arabidopsis thaliana GN=ABCG28 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  380 RFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLP 655
            + L+  V+G+  PGR+ A+MGPSG+GKTT L  L G+   +P   ++G++ VNGK  S ++YK    +V Q+D+    LTV E L  +A  +LP
Sbjct:  513 KHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGK---APGCIMTGMILVNGKVESIQSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLP 603          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: PDH1_CANGA (ATP-binding cassette transporter CGR1 OS=Candida glabrata GN=PDH1 PE=3 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 48/145 (33.10%), Postives = 75/145 (51.72%), Query Frame = 2
Query:  239 YGDDDERNDVAEANGDGEAPVDGKVFPVTIR*QNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV 670
            Y ++ +   +   +  G   V           QN+   +  K+   VR +LNNV G  KPG L A+MG SG+GKTTLL+ LA +        ++G + VNG+P  ++ +    Y +Q+DL     TVRE+L  +A L+ P  +S+
Sbjct:  856 YDENADSESITSGSRGGSPQVGLSKSEAIFHWQNLCYDVPIKTE--VRRILNNVDGWVKPGTLTALMGASGAGKTTLLDCLAERTTMGV---ITGDVMVNGRPRDTSFSRSIGYCQQQDLHLKTATVRESLRFSAYLRQPSSVSI 995          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB14G_ARATH (ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 49/120 (40.83%), Postives = 68/120 (56.67%), Query Frame = 2
Query:  311 VFPVTIR*QNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 667
            V+ V I  Q   C  S KS +    +LN ++G   PG  LA++GPSGSGKTTLL+ L G+L  +     SG +  NG+P S     +  +V Q+D+ +  LTV ETL   A L+LP  L+
Sbjct:   59 VYKVKIE-QTSQCMGSWKSKEKT--ILNGITGMVCPGEFLAMLGPSGSGKTTLLSALGGRLSKT----FSGKVMYNGQPFSGCIKRRTGFVAQDDVLYPHLTVWETLFFTALLRLPSSLT 171          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: WHITE_CERCA (Protein white OS=Ceratitis capitata GN=W PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 42/94 (44.68%), Postives = 56/94 (59.57%), Query Frame = 2
Query:  380 RFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY--KFAYVRQEDLFFSQLTVRETLSLAAELQLP 655
            + LL N SG A PG LLA+MG SG+GKTTLLN  A +     ++  S +  +NG P   K    + AYV+Q+DLF   LT RE L   A +++P
Sbjct:  101 KHLLKNDSGVAYPGELLAVMGSSGAGKTTLLNASAFRSSKGVQISPSTIRMLNGHPVDAKEMQARCAYVQQDDLFIGSLTAREHLIFQAMVRMP 194          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: WBC30_ARATH (Putative white-brown complex homolog protein 30 OS=Arabidopsis thaliana GN=WBC30 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 42/113 (37.17%), Postives = 67/113 (59.29%), Query Frame = 2
Query:  335 QNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 667
            +++T +L  K     + +L +V+G+  PGR+ A+MGPSG+GKTT L+ LAG+     R   +GL+ +NG+  S  +YK    +V Q+D+    LTV E L  +A  +L   +S
Sbjct:  468 KDLTLTLKGKH----KHILRSVTGKIMPGRVSAVMGPSGAGKTTFLSALAGKATGCTR---TGLILINGRNDSINSYKKITGFVPQDDVVHGNLTVEENLRFSARCRLSAYMS 573          
The following BLAST results are available for this feature:
BLAST of FC876184 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CDR4_CANAL1.080e-1244.33ABC transporter CDR4 OS=Candida albicans GN=CDR4 P... [more]
ABCGO_DICDI1.080e-1239.32ABC transporter G family member 24 OS=Dictyosteliu... [more]
ABCG4_DICDI1.080e-1244.68ABC transporter G family member 4 OS=Dictyostelium... [more]
AB11G_ARATH1.080e-1243.96ABC transporter G family member 11 OS=Arabidopsis ... [more]
WHT3_CAEEL1.411e-1240.52ABC transporter ATP-binding protein/permease wht-3... [more]
AB28G_ARATH2.407e-1241.49ABC transporter G family member 28 OS=Arabidopsis ... [more]
PDH1_CANGA3.143e-1233.10ATP-binding cassette transporter CGR1 OS=Candida g... [more]
AB14G_ARATH3.143e-1240.83ABC transporter G family member 14 OS=Arabidopsis ... [more]
WHITE_CERCA4.105e-1244.68Protein white OS=Ceratitis capitata GN=W PE=2 SV=1[more]
WBC30_ARATH4.105e-1237.17Putative white-brown complex homolog protein 30 OS... [more]

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Properties
Property NameValue
Genbank descriptionC32001D01EF DevOvary1 Citrus clementina cDNA clone C32001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876184 ID=FC876184; Name=FC876184; organism=Citrus clementina; type=EST; length=671bp
GCTACTCCAGTTGCACTGCTGCAACGGAGGCTAAGCAACAAGAAGATAAA
GTTAAAATTAAATTTTATAAATAAAAAAGACAAAAATGGTGAATTTTGGA
GGGAATAAGGTGGGCCAAGTGGTGGCAGGAATTGGCGGGAACGGCGTAGG
CCAGGTACTGGCAGCCGTTGCCGTCTCTCTTTTGTTCCGCTTGTTTACTG
GACCTGGTCCGGCATTGGTAACAGATGACGACTCTGCCTATGGTGACGAC
GATGAAAGAAACGACGTCGCAGAAGCTAATGGTGACGGTGAAGCTCCGGT
TGACGGCAAAGTCTTCCCGGTCACCATCCGTTGACAAAACATCACTTGCT
CCCTGTCCGATAAATCCTCAAAATCAGTGCGGTTTCTTCTAAATAATGTG
AGTGGAGAGGCGAAACCTGGAAGATTATTGGCGATAATGGGACCGTCAGG
GTCAGGGAAAACAACGTTGCTGAATGTTCTGGCGGGTCAGTTAATGGCAT
CGCCACGATTACATTTATCCGGCCTATTGGAAGTCAATGGAAAACCTAGT
TCAAACAAAGCTTATAAGTTTGCCTATGTGAGACAGGAGGATCTTTTTTT
CTCTCAGTTGACAGTGCGGGAAACACTCTCTCTTGCAGCTGAACTTCAGC
TTCCAGAAATACTTTCTGTGG
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