FC876187
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: Y8823_DICDI (Probable farnesyl diphosphate synthase DDB_G0278823 OS=Dictyostelium discoideum GN=DDB_G0278823 PE=3 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 1.053e-40 Identity = 83/209 (39.71%), Postives = 133/209 (63.64%), Query Frame = 2 Query: 122 DLKSRFIEVYGVLKQELLND-PAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPK------VGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLIT-TIEGE---KDLSNHRRIVQYKTAYYSFYLPVACALL 715 ++ F ++ +L E+ + +F +S W++ ++ N GGK+NRG+SV++S L EG+ LT E F + LGWC+E QA +LV DDIMD S RRG+PCW++ + VG+ A ND ++ + + +L+ +F+++ YY+++++LF++ FQT GQ++DL T I G+ +L NH RI +YKTAYYSF+ PVA A+L Sbjct: 10 EVLEEFANLFPILLNEIKKELEKIDFPKESIHWIETVIKANSTGGKMNRGISVLESLESLNEGRALTRHEIFQAQTLGWCVEIFQACYLVSDDIMDQSLKRRGKPCWYKQKRPNSDQEVGLAAINDSFIIESCVFILLEKYFKNESYYLNIVELFHKTGFQTQLGQLLDLTTQPIRGDFSSINLKNHTRITEYKTAYYSFFFPVALAML 218
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: GGPPS_SCHPO (Geranylgeranyl pyrophosphate synthetase OS=Schizosaccharomyces pombe GN=spo9 PE=1 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.990e-31 Identity = 79/164 (48.17%), Postives = 102/164 (62.20%), Query Frame = 2 Query: 239 NVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEK-----DLSNHRRIVQYKTAYYSFYLPVACALL 715 N GGK NRGL+V+ S L +EL + EF ++ LGW IE LQ FL+ DDIMD S RRG CW+ V V A N+ LL I +++ +FR+ PYYVDLLD F EV F T GQ DL+++ +GE DL + I+ YKT++YSFYLP+ CALL Sbjct: 50 NTLGGKNNRGLAVLQSLTSLIN-RELEEAEFRDAALLGWLIEILQGCFLMADDIMDQSIKRRGLDCWYLVVGVRR-AINESQLLEACIPLLIRKYFRNMPYYVDLLDTFREVTFLTELGQQEDLLSSRDGEASLRSFDLMKYDFIITYKTSFYSFYLPIKCALL 211
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: Y8742_DICDI (Probable farnesyl diphosphate synthase DDB_G0268742 OS=Dictyostelium discoideum GN=DDB_G0268742 PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.277e-27 Identity = 75/223 (33.63%), Postives = 125/223 (56.05%), Query Frame = 2 Query: 128 KSRFIEVYGVLKQELLND-PAFEFDHDSRQWVDRMLDY-NVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSS------------ALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVP--------KVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLS-----NHRRIVQYKTAYYSFYLPVACALL 715 + FI+VY +LK ++ ++ P + ++ ++ +L+ + GGK+ RGL + S L K D+ ++ +GWC+E+L ++FL+ DDIMD TRRG+ CW+R P KVGM+A ND VL+ + + ILK +F++K YYVDL +LF+E F TA+GQ++D + D + N+ +I K++++ FYL + A+L Sbjct: 13 REEFIKVYSILKNDVFDELPKMKLASNAIDYIKELLNSPTITGGKMYRGLGFLYSLNTLLIAKNNFDNNNNNNNNKNSETSQHEARIIGWCLEFL-SFFLITDDIMDNGLTRRGELCWYRHPSPFNPTEHKVGMLAINDSVLIESFLFFILKKYFKNKSYYVDLFELFHESIFYTATGQLLDSSSFHLKRGDFTNFTFENYSQICINKSSHHVFYLQIKIAIL 234 The following BLAST results are available for this feature:
BLAST of FC876187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC876187 ID=FC876187; Name=FC876187; organism=Citrus clementina; type=EST; length=717bpback to top |