FC876187

Overview
NameFC876187
Unique NameFC876187
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876187_ssr8 microsatellite FC876187_ssr8:8..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: Y8823_DICDI (Probable farnesyl diphosphate synthase DDB_G0278823 OS=Dictyostelium discoideum GN=DDB_G0278823 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.053e-40
Identity = 83/209 (39.71%), Postives = 133/209 (63.64%), Query Frame = 2
Query:  122 DLKSRFIEVYGVLKQELLND-PAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPK------VGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLIT-TIEGE---KDLSNHRRIVQYKTAYYSFYLPVACALL 715
            ++   F  ++ +L  E+  +    +F  +S  W++ ++  N  GGK+NRG+SV++S   L EG+ LT  E F +  LGWC+E  QA +LV DDIMD S  RRG+PCW++  +      VG+ A ND  ++ + +  +L+ +F+++ YY+++++LF++  FQT  GQ++DL T  I G+    +L NH RI +YKTAYYSF+ PVA A+L
Sbjct:   10 EVLEEFANLFPILLNEIKKELEKIDFPKESIHWIETVIKANSTGGKMNRGISVLESLESLNEGRALTRHEIFQAQTLGWCVEIFQACYLVSDDIMDQSLKRRGKPCWYKQKRPNSDQEVGLAAINDSFIIESCVFILLEKYFKNESYYLNIVELFHKTGFQTQLGQLLDLTTQPIRGDFSSINLKNHTRITEYKTAYYSFFFPVALAML 218          
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: GGPPS_SCHPO (Geranylgeranyl pyrophosphate synthetase OS=Schizosaccharomyces pombe GN=spo9 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.990e-31
Identity = 79/164 (48.17%), Postives = 102/164 (62.20%), Query Frame = 2
Query:  239 NVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEK-----DLSNHRRIVQYKTAYYSFYLPVACALL 715
            N  GGK NRGL+V+ S   L   +EL + EF  ++ LGW IE LQ  FL+ DDIMD S  RRG  CW+ V  V   A N+  LL   I  +++ +FR+ PYYVDLLD F EV F T  GQ  DL+++ +GE      DL  +  I+ YKT++YSFYLP+ CALL
Sbjct:   50 NTLGGKNNRGLAVLQSLTSLIN-RELEEAEFRDAALLGWLIEILQGCFLMADDIMDQSIKRRGLDCWYLVVGVRR-AINESQLLEACIPLLIRKYFRNMPYYVDLLDTFREVTFLTELGQQEDLLSSRDGEASLRSFDLMKYDFIITYKTSFYSFYLPIKCALL 211          
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: Y8742_DICDI (Probable farnesyl diphosphate synthase DDB_G0268742 OS=Dictyostelium discoideum GN=DDB_G0268742 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.277e-27
Identity = 75/223 (33.63%), Postives = 125/223 (56.05%), Query Frame = 2
Query:  128 KSRFIEVYGVLKQELLND-PAFEFDHDSRQWVDRMLDY-NVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSS------------ALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVP--------KVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLS-----NHRRIVQYKTAYYSFYLPVACALL 715
            +  FI+VY +LK ++ ++ P  +   ++  ++  +L+   + GGK+ RGL  + S   L   K   D+    ++             +GWC+E+L ++FL+ DDIMD   TRRG+ CW+R P        KVGM+A ND VL+ + +  ILK +F++K YYVDL +LF+E  F TA+GQ++D  +      D +     N+ +I   K++++ FYL +  A+L
Sbjct:   13 REEFIKVYSILKNDVFDELPKMKLASNAIDYIKELLNSPTITGGKMYRGLGFLYSLNTLLIAKNNFDNNNNNNNNKNSETSQHEARIIGWCLEFL-SFFLITDDIMDNGLTRRGELCWYRHPSPFNPTEHKVGMLAINDSVLIESFLFFILKKYFKNKSYYVDLFELFHESIFYTATGQLLDSSSFHLKRGDFTNFTFENYSQICINKSSHHVFYLQIKIAIL 234          
The following BLAST results are available for this feature:
BLAST of FC876187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
Y8823_DICDI1.053e-4039.71Probable farnesyl diphosphate synthase DDB_G027882... [more]
GGPPS_SCHPO1.990e-3148.17Geranylgeranyl pyrophosphate synthetase OS=Schizos... [more]
Y8742_DICDI2.277e-2733.63Probable farnesyl diphosphate synthase DDB_G026874... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32001D07EF DevOvary1 Citrus clementina cDNA clone C32001D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876187 ID=FC876187; Name=FC876187; organism=Citrus clementina; type=EST; length=717bp
GAAACAACTCTCTCTCTCTCTCTCTTCTCTGTATTTTGCTTTCTTTCATT
CTGTTTCTCTCTTTTTTTTCTTACTTTTTTTTTTGGTGGTGGGTCGCAAA
AGCGGAAGGTAAAAAATGAGTGATCTGAAGTCAAGATTCATTGAGGTGTA
TGGCGTTTTAAAACAAGAGCTGCTGAATGATCCTGCATTTGAGTTCGACC
ACGATTCTCGCCAATGGGTTGATCGTATGCTGGATTACAATGTACCTGGA
GGAAAGCTGAACCGAGGGCTATCTGTTGTTGACAGCTACAGGTTACTGAA
AGAAGGAAAAGAACTAACAGATGATGAATTCTTTCTCTCATCTGCACTAG
GCTGGTGCATCGAATGGCTTCAAGCATATTTTCTTGTTCTTGATGATATC
ATGGATGGCTCTCATACACGCCGTGGTCAACCTTGCTGGTTCAGAGTCCC
CAAGGTTGGTATGATTGCTGCAAATGATGGTGTCTTACTACGCAACCATA
TCTCCAGAATTCTCAAGAATCATTTTAGAGACAAGCCTTATTACGTGGAC
CTGTTGGATTTATTTAATGAGGTGGAATTTCAAACAGCTTCAGGACAAAT
GATAGACTTAATTACCACAATCGAAGGAGAGAAAGATCTATCGAATCATC
GTCGCATTGTTCAGTACAAAACTGCTTACTATTCATTTTACCTTCCAGTT
GCTTGTGCATTACTTAT
back to top