FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_SHIF8 (Triosephosphate isomerase OS=Shigella flexneri serotype 5b (strain 8401) GN=tpiA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 49/124 (39.52%), Postives = 66/124 (53.23%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG++  + +LVS+L  +               +YID  K       I + AQN  +   GAFTGE S   LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGE 129
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_SHIDS (Triosephosphate isomerase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=tpiA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 49/124 (39.52%), Postives = 66/124 (53.23%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG++  + +LVS+L  +               +YID  K       I + AQN  +   GAFTGE S   LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGE 129
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_SHIBS (Triosephosphate isomerase OS=Shigella boydii serotype 4 (strain Sb227) GN=tpiA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 49/124 (39.52%), Postives = 66/124 (53.23%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG++  + +LVS+L  +               +YID  K       I + AQN  +   GAFTGE S   LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGE 129
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_SHIB3 (Triosephosphate isomerase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=tpiA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 49/124 (39.52%), Postives = 66/124 (53.23%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG++  + +LVS+L  +               +YID  K       I + AQN  +   GAFTGE S   LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGE 129
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_GEOUR (Triosephosphate isomerase OS=Geobacter uraniireducens (strain Rf4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 48/124 (38.71%), Postives = 66/124 (53.23%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLND-AKLEXXXXXXXXXXFVYIDQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + GNWK   T     +LV++L    K            F  +  VKN+L    I +AAQ+ +  + GA+TGE+S   L D GC  V++GHSERR   GE D+ + KK   AL  GL ++ CIGE
Sbjct:    6 IAGNWKLYKTTSEALELVNELIPLVKNASGVEIVVAPVFTVLSTVKNALKGTNINLAAQDCFWDEQGAYTGEVSSTMLLDAGCSHVIIGHSERRQFFGETDETVNKKNIAALRAGLTILFCIGE 129
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ESCF3 (Triosephosphate isomerase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=tpiA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 49/124 (39.52%), Postives = 66/124 (53.23%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG++  + +LVS+L  +               +YID  K       I + AQN  +   GAFTGE S   LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGE 129
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ECOUT (Triosephosphate isomerase OS=Escherichia coli (strain UTI89 / UPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 49/124 (39.52%), Postives = 66/124 (53.23%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG++  + +LVS+L  +               +YID  K       I + AQN  +   GAFTGE S   LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGE 129
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ECOSM (Triosephosphate isomerase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 49/124 (39.52%), Postives = 66/124 (53.23%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG++  + +LVS+L  +               +YID  K       I + AQN  +   GAFTGE S   LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGE 129
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ECOSE (Triosephosphate isomerase OS=Escherichia coli (strain SE11) GN=tpiA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 49/124 (39.52%), Postives = 66/124 (53.23%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG++  + +LVS+L  +               +YID  K       I + AQN  +   GAFTGE S   LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGE 129
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ECOLU (Triosephosphate isomerase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 49/124 (39.52%), Postives = 66/124 (53.23%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG++  + +LVS+L  +               +YID  K       I + AQN  +   GAFTGE S   LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGE 129
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS_SHIF81.072e-1539.52Triosephosphate isomerase OS=Shigella flexneri ser... [more]
TPIS_SHIDS1.072e-1539.52Triosephosphate isomerase OS=Shigella dysenteriae ... [more]
TPIS_SHIBS1.072e-1539.52Triosephosphate isomerase OS=Shigella boydii serot... [more]
TPIS_SHIB31.072e-1539.52Triosephosphate isomerase OS=Shigella boydii serot... [more]
TPIS_GEOUR1.072e-1538.71Triosephosphate isomerase OS=Geobacter uraniireduc... [more]
TPIS_ESCF31.072e-1539.52Triosephosphate isomerase OS=Escherichia fergusoni... [more]
TPIS_ECOUT1.072e-1539.52Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOSM1.072e-1539.52Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOSE1.072e-1539.52Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOLU1.072e-1539.52Triosephosphate isomerase OS=Escherichia coli O17:... [more]

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Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
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