FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_NITSB (Triosephosphate isomerase OS=Nitratiruptor sp. (strain SB155-2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 39/122 (31.97%), Postives = 63/122 (51.64%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            +  N+K N T+ S    +  LN    +             +DQ +       +I AQN++  + G+FTGEI ++QL++ G + V+LGHSERRH+  E  + I +K A+    G  +  C+GE
Sbjct:    3 LAANFKMNHTRASTKAYIERLNAYGKQTDIDIAVFPPATALDQYETFA----DIGAQNAYAAEHGSFTGEIGLQQLQEFGIETVLLGHSERRHIFYESQEMIARKFAFYKERGFTIYYCLGE 120          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_LEPBP (Triosephosphate isomerase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=tpiA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 42/126 (33.33%), Postives = 65/126 (51.59%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N T     ++   L  A              ++++ V +   D ++ + AQN++     A TGEIS  QL ++G + V++GHSERR  +GE  +F   K +Y L  GL V+ C+GE
Sbjct:    3 KKIIAGNWKMNLTLAEAKEITKGLLSACDSSSYEIMVFPSALHLESVASIARDSQLIVGAQNAYQSGLTAMTGEISPVQLAELGIQTVLVGHSERRQFLGETSEFDNTKISYFLKHGLRVVYCVGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_LEPBA (Triosephosphate isomerase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=tpiA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 42/126 (33.33%), Postives = 65/126 (51.59%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N T     ++   L  A              ++++ V +   D ++ + AQN++     A TGEIS  QL ++G + V++GHSERR  +GE  +F   K +Y L  GL V+ C+GE
Sbjct:    3 KKIIAGNWKMNLTLAEAKEITKGLLSACDSSSYEIMVFPSALHLESVASIARDSQLIVGAQNAYQSGLTAMTGEISPVQLAELGIQTVLVGHSERRQFLGETSEFDNTKISYFLKHGLRVVYCVGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_LACPL (Triosephosphate isomerase OS=Lactobacillus plantarum GN=tpiA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 45/127 (35.43%), Postives = 62/127 (48.82%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLND-----AKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + GNWK N T       V+ + D     +K+E             ++  K S    ++IAA+N++    GAFTGE S   L D+G  +VV+GHSERR    E D+ I KKA      G+  I C GE
Sbjct:    6 IAGNWKMNKTASEALAFVNAVKDQLPDPSKVESVVAAPALFLQEMVEAAKGS---DLKIAAENAYFEDAGAFTGETSPAALADLGVDYVVIGHSERRGYFHETDEDINKKAHAIFKNGMKPIICCGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_GRABC (Triosephosphate isomerase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 44/125 (35.20%), Postives = 61/125 (48.80%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXX--FVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + GNWK NG + +   L+  L DA                  I Q  + L    IE+ AQ+  + + GA TG++S E L + G  WV+LGHSERR   GE  + + +K   A   GL  I C+GE
Sbjct:    5 IAGNWKMNGLRSTSESLLQALRDAAPHALRNCDMLICPPATLIAQAASVLAGSGIEVGAQDCHMARSGAHTGDLSAEMLVEAGAHWVILGHSERRRDHGELSETVREKVIAARQFGLTPIVCVGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS2_RHILO (Triosephosphate isomerase 2 OS=Rhizobium loti GN=tpiA2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 45/127 (35.43%), Postives = 63/127 (49.61%), Query Frame = 1
Query:  304 FFVGGNWKCNGTKESITKLVSDLND--AKLEXXXXXXXXXXFVYIDQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            ++VG +WK N T          L       +          F  + +VK +L+  RI++ AQN      GA+TGEIS   L+D G   V LGHSERR   GE D+ +G K A A+  G+  + C+GE
Sbjct:    5 YWVGTSWKMNKTLAEALDFAERLAGFIPGFDDRIQPFVIPPFTAVREVKRALSSTRIKVGAQNMHWADAGAWTGEISPPMLRDCGLDLVELGHSERREHFGETDRTVGLKTAAAVKHGMIPLICVGE 131          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PSEHT (Triosephosphate isomerase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=tpiA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 37/128 (28.91%), Postives = 67/128 (52.34%), Query Frame = 1
Query:  292 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            ++ K  V GNWK NG+ E + ++   +N+ K             +    + + ++   +  ++N+     GAFTGE+  + +K++G ++V++GHSERR +  E +  +  K A A   GL  I C+GE
Sbjct:    2 AARKAMVAGNWKMNGSLELVKQMSDAINNVKSNEIDIVLFPPFPLVSAMIASGVSTGTQTVSENT----PGAFTGEVDAQLIKELGAQYVLVGHSERRSIYKESNDVVAAKFARAQQVGLTPILCVGE 125          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PORGI (Triosephosphate isomerase OS=Porphyromonas gingivalis GN=tpiA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 45/129 (34.88%), Postives = 67/129 (51.94%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXX---FVYIDQVKNSL-TDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  V GNWK N T +    L  +L DA L+             F+++  +  ++ T RI +AA+N    + GA+TGE+S   +   G ++V++GHSERR    E    + +K   ALS GL  I C+GE
Sbjct:    3 KNIVAGNWKMNKTLQEGLALAKEL-DAALKGRTINCDVIIGTPFIHLASIAAAIDTTRIGVAAENCADKESGAYTGEVSAAMVASTGARYVIIGHSERRAYYHETSPILMEKVKLALSNGLTPIFCVGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PORG3 (Triosephosphate isomerase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=tpiA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 45/129 (34.88%), Postives = 67/129 (51.94%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXX---FVYIDQVKNSL-TDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  V GNWK N T +    L  +L DA L+             F+++  +  ++ T RI +AA+N    + GA+TGE+S   +   G ++V++GHSERR    E    + +K   ALS GL  I C+GE
Sbjct:    3 KNIVAGNWKMNKTLQEGLALAKEL-DAALKGRTISCDVIIGTPFIHLASIAAAIDTTRIGVAAENCADKESGAYTGEVSAAMVASTGARYVIIGHSERRAYYHETSPILMEKVKLALSNGLTPIFCVGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_MYCGE (Triosephosphate isomerase OS=Mycoplasma genitalium GN=tpiA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 37/120 (30.83%), Postives = 59/120 (49.17%), Query Frame = 1
Query:  316 GNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            GNWK N   +     V      KL           +V++ ++K  ++D + + AQ++   + G++TG +S  QL+DIG    ++GHSERR    E    I +K    L   + V+ CIGE
Sbjct:    8 GNWKTNKNLKDAVSFVEQFQQNKLNYNAKIGIAPVYVHLTEIKKIISDSLLLFAQDANFIESGSYTGTVSFTQLQDIGVNNSIIGHSERRKYYNETSAVINQKLFACLKASMQVVLCIGE 127          
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS_NITSB1.450e-1231.97Triosephosphate isomerase OS=Nitratiruptor sp. (st... [more]
TPIS_LEPBP1.450e-1233.33Triosephosphate isomerase OS=Leptospira biflexa se... [more]
TPIS_LEPBA1.450e-1233.33Triosephosphate isomerase OS=Leptospira biflexa se... [more]
TPIS_LACPL1.450e-1235.43Triosephosphate isomerase OS=Lactobacillus plantar... [more]
TPIS_GRABC1.450e-1235.20Triosephosphate isomerase OS=Granulibacter bethesd... [more]
TPIS2_RHILO1.450e-1235.43Triosephosphate isomerase 2 OS=Rhizobium loti GN=t... [more]
TPIS_PSEHT1.893e-1228.91Triosephosphate isomerase OS=Pseudoalteromonas hal... [more]
TPIS_PORGI1.893e-1234.88Triosephosphate isomerase OS=Porphyromonas gingiva... [more]
TPIS_PORG31.893e-1234.88Triosephosphate isomerase OS=Porphyromonas gingiva... [more]
TPIS_MYCGE1.893e-1230.83Triosephosphate isomerase OS=Mycoplasma genitalium... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
back to top