FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_DEHE1 (Triosephosphate isomerase OS=Dehalococcoides ethenogenes (strain 195) GN=tpiA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 45/128 (35.16%), Postives = 64/128 (50.00%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQ 678
            +  + GNWK N T      LV  +  +              F+ +  VK  L    I + AQN +  + GA+TGEIS   L+DI C +V++GHSERR   GE  Q + +K   AL  G+  I C+GE+
Sbjct:    3 QIIIAGNWKMNTTLSEACTLVQGMKYELDQISGIQKIVCPPFISLAPVKTILDGSSIHLGAQNLFYEEKGAYTGEISPLMLQDI-CPYVIIGHSERRAYFGETGQVVNRKIKAALQAGIMPIVCVGEK 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_CHLTE (Triosephosphate isomerase OS=Chlorobium tepidum GN=tpiA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 45/124 (36.29%), Postives = 61/124 (49.19%), Query Frame = 1
Query:  316 GNWKCNGT-KESI---TKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            GNWK N T  ES+   T +   +    ++           +Y +  K      I + AQN      G FTGE+S   L   GC +V+LGHSERR + GE +  +  K   AL+EGL VI C+GE
Sbjct:    3 GNWKMNNTIAESVDLATAIAEKVGADGVQCEVGIAPTFPALY-EVCKVIEWSGIRLCAQNCHYESDGPFTGEVSTRMLAAAGCSYVILGHSERRQLFGETNATVNLKVKKALAEGLSVILCVGE 125          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_BUCAP (Triosephosphate isomerase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=tpiA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 44/128 (34.38%), Postives = 68/128 (53.12%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLND--AKLEXXXXXXXXXXFVYIDQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  +  NWK NG+ ++I+  ++ L    +              V++++V   +    I +AAQN  V   GAFTGE S   +KDIG K++++GHSERR +  E+++ I KK     +  L  I CIGE
Sbjct:    3 KKIIAANWKLNGSIKTISYFLTFLKSQISSFLKNNIIIIAPPTVFLERVYKDINSINIHLAAQNIDVNLTGAFTGENSALMMKDIGVKYIIIGHSERRLLHNENNEIIAKKFCLVKNLNLVPILCIGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_CORDI (Triosephosphate isomerase OS=Corynebacterium diphtheriae GN=tpiA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 44/128 (34.38%), Postives = 63/128 (49.22%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLT----DRIEIA--AQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + GNWK N         V  L  A  +           V    +++  T    D++ I   AQ+    + GA+TGEIS + L  +GC WVV+GHSERR   GE  + +  KA  AL++G+  I C+GE
Sbjct:    7 IAGNWKMNLDHLQAVATVQKLAFALPKEYYEKVDVAVTVPFTDLRSVQTLIEGDKLAITYGAQDVSQHEAGAYTGEISAQMLAKLGCTWVVVGHSERREYHGESSELVAVKAKAALNQGISPIVCVGE 134          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_BACWK (Triosephosphate isomerase OS=Bacillus weihenstephanensis (strain KBAB4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 47/128 (36.72%), Postives = 59/128 (46.09%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLND---AKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N T       V ++     A             F+     K   TD +++ AQN    K GAFTGEIS   L D+   +VVLGHSERR +  E D+ + KK   A   GL  I C GE
Sbjct:    3 KPIIAGNWKMNKTLAEAVSFVEEVKGQIPAASAVDAVVCSPALFLERLVAKAEGTD-LQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTLAAFEHGLTPIVCCGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_STRPD (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=tpiA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 48/132 (36.36%), Postives = 65/132 (49.24%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGT----KESITKLVSDLNDAKLEXXXXXXXXXXFVY-IDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            S K  + GNWK N      K  +  + S L    L            V  I+  K+S+   +++AAQN +    GAFTGE S + L ++G  +VV+GHSERR    E D+ I KKA    + GL  I C GE
Sbjct:    2 SRKPIIAGNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIESAKDSV---LKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIVCCGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_LACS1 (Triosephosphate isomerase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=tpiA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 44/127 (34.65%), Postives = 63/127 (49.61%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLND-----AKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + GNWK N   E   + V  + D     +++E             ++  K S    +++AA+N +    GAFTGE S + LK++G  +VV+GHSERR    E D+ I KKA      GL  I C GE
Sbjct:    6 IAGNWKMNMNPEQTAEFVKAVKDNLPAASEVEAVIAAPAVDLPALLENAKGS---DLKVAAENCYFEDEGAFTGETSPKVLKEMGVDYVVIGHSERRDYFHETDEDINKKAHAIFRNGLTPIICCGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_GEOKA (Triosephosphate isomerase OS=Geobacillus kaustophilus GN=tpiA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 43/128 (33.59%), Postives = 65/128 (50.78%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLND-AKLEXXXXXXXXXXFVYIDQVKNSL--TDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK + T     + V ++                 F+++D++  +   TD ++I AQ       GA+TGE+S   LKD+G  +V+LGHSERR +  E D+ + KK   A + GL  I C GE
Sbjct:    3 KRIIAGNWKMHKTLAEAVQFVENVKGHVPPADEVDSVVCAPFLFLDRLVQAADGTD-LKIGAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLIPIICCGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_BACHD (Triosephosphate isomerase OS=Bacillus halodurans GN=tpiA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 43/127 (33.86%), Postives = 59/127 (46.46%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDA--KLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N T       V ++  A    +                V+ +    + I AQN    + GAFTGEIS   L D+   +V+LGHSERR +  E D+ + KK   A + GL  I C+GE
Sbjct:    3 KPIIAGNWKMNKTVGEAKAFVEEVKGAIPSSDKVDSVVCSPALFLEGLVQKAEGTELRIGAQNMHFEESGAFTGEISPVALSDMKVDYVILGHSERRDMFAETDELVNKKTHAAFAHGLTPIVCVGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS1_LISMF (Triosephosphate isomerase 1 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 43/127 (33.86%), Postives = 62/127 (48.82%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDL-NDAKLEXXXXXXXXXXFVYIDQ-VKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N T     +   D+ N+               +++ + V+ +    + +AAQN +    GAFTGEIS   L D+G  +V++GHSERR    E D+ I KKA      G+  I C GE
Sbjct:    3 KPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQELVRLTEGTNLRVAAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGE 129          
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS_DEHE11.893e-1235.16Triosephosphate isomerase OS=Dehalococcoides ethen... [more]
TPIS_CHLTE1.893e-1236.29Triosephosphate isomerase OS=Chlorobium tepidum GN... [more]
TPIS_BUCAP1.893e-1234.38Triosephosphate isomerase OS=Buchnera aphidicola s... [more]
TPIS_CORDI2.472e-1234.38Triosephosphate isomerase OS=Corynebacterium dipht... [more]
TPIS_BACWK2.472e-1236.72Triosephosphate isomerase OS=Bacillus weihenstepha... [more]
TPIS_STRPD3.229e-1236.36Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_LACS13.229e-1234.65Triosephosphate isomerase OS=Lactobacillus salivar... [more]
TPIS_GEOKA3.229e-1233.59Triosephosphate isomerase OS=Geobacillus kaustophi... [more]
TPIS_BACHD3.229e-1233.86Triosephosphate isomerase OS=Bacillus halodurans G... [more]
TPIS1_LISMF3.229e-1233.86Triosephosphate isomerase 1 OS=Listeria monocytoge... [more]

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Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
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