FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_BACC4 (Triosephosphate isomerase OS=Bacillus cereus (strain B4264) GN=tpiA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 46/128 (35.94%), Postives = 58/128 (45.31%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLND---AKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N T       V ++     A             F+         TD +++ AQN    K GAFTGEIS   L D+   +VVLGHSERR +  E D+ + KK   A   GL  I C GE
Sbjct:    3 KPIIAGNWKMNKTLSEAVSFVEEVKGQIPAASAVDAVVCSPALFLERLVAATEGTD-LQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_BACC2 (Triosephosphate isomerase OS=Bacillus cereus (strain G9842) GN=tpiA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 46/128 (35.94%), Postives = 58/128 (45.31%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLND---AKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N T       V ++     A             F+         TD +++ AQN    K GAFTGEIS   L D+   +VVLGHSERR +  E D+ + KK   A   GL  I C GE
Sbjct:    3 KPIIAGNWKMNKTLSEAVSFVEEVKGQIPAASAVDAVVCSPALFLERLVAATEGTD-LQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTLAAFEHGLTPIVCCGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_BACC1 (Triosephosphate isomerase OS=Bacillus cereus (strain ATCC 10987) GN=tpiA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 46/128 (35.94%), Postives = 58/128 (45.31%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLND---AKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N T       V ++     A             F+         TD +++ AQN    K GAFTGEIS   L D+   +VVLGHSERR +  E D+ + KK   A   GL  I C GE
Sbjct:    3 KPIIAGNWKMNKTLSEAVSFVEEVKGQIPAASAVDAVVCSPALFLERLVAATEGTD-LQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_BACC0 (Triosephosphate isomerase OS=Bacillus cereus (strain AH820) GN=tpiA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 46/128 (35.94%), Postives = 58/128 (45.31%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLND---AKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N T       V ++     A             F+         TD +++ AQN    K GAFTGEIS   L D+   +VVLGHSERR +  E D+ + KK   A   GL  I C GE
Sbjct:    3 KPIIAGNWKMNKTLSEAVSFVEEVKGQIPAASAVDAVVCSPALFLERLVAATEGTD-LQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_BACAN (Triosephosphate isomerase OS=Bacillus anthracis GN=tpiA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 46/128 (35.94%), Postives = 58/128 (45.31%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLND---AKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N T       V ++     A             F+         TD +++ AQN    K GAFTGEIS   L D+   +VVLGHSERR +  E D+ + KK   A   GL  I C GE
Sbjct:    3 KPIIAGNWKMNKTLSEAVSFVEEVKGQIPAASAVDAVVCSPALFLERLVAATEGTD-LQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ALHEH (Triosephosphate isomerase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 42/127 (33.07%), Postives = 63/127 (49.61%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGK--GGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  V GNWK NG+   +  +   L D              F YI  ++ ++ D   +A     V +   GA+TGE++   L ++GC+ V++GHSERR +  E D+ +  K   AL  GL  I C+GE
Sbjct:    3 KPMVAGNWKMNGSLALVNDMGRALADVDCSAVDVLVCPP-FPYIGPLRRAVPDESGVALGGQDVSRYDSGAYTGEVAGAMLAEMGCRHVIVGHSERRAMHAETDEVVVDKVQAALRAGLTPIVCVGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_NITEU (Triosephosphate isomerase OS=Nitrosomonas europaea GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 42/128 (32.81%), Postives = 66/128 (51.56%), Query Frame = 1
Query:  307 FVGGNWKCNGT----KESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            FV GNWK +G+    +E +  +VS     +            + YI Q ++ L    +    QN      GA+TGE+S + L D+GC++V++GHSERR + GE +Q + +K   A    +  I C+GE
Sbjct:    6 FVAGNWKMHGSLVRNQELLDAVVSGTRSLQ---NVSCVVCVPYPYIAQTQSVLEGSHVLWGGQNVSQYHHGAYTGEVSADMLADLGCRYVIVGHSERRTLFGEGNQVVAEKFRAAQERSITPILCVGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_MYCPI (Triosephosphate isomerase (Fragment) OS=Mycoplasma pirum GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 43/126 (34.13%), Postives = 63/126 (50.00%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDA--KLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIG 672
            K  + GNWK N T++ + +    LN +                ++++  K+    ++ IAAQ++     GAFTG IS  QLKDI  K+V++GHSERR    E D  + KK    L   +  I CIG
Sbjct:    3 KRIIIGNWKTNKTQKEVKEFFKILNASLKNKNICCTFGVAPVAIHLELAKSLAPKQMIIAAQDANYISSGAFTGTISWSQLKDIKIKYVIVGHSERRMYYNETDDIVNKKVKNLLENKMIPILCIG 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_DECAR (Triosephosphate isomerase OS=Dechloromonas aromatica (strain RCB) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 39/126 (30.95%), Postives = 63/126 (50.00%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  V GNWK +G+ +    L+  +                + Y+ QV++ L+   +   AQ+    + GAFTGE++   L + GC++V++GHSERR + GE D  +  K       GL  + C+GE
Sbjct:    3 KKLVAGNWKMHGSLQQNAALLELIKAGVSSLPCEVAVCPPYPYLGQVQSILSGSALAWGAQSVSEHQSGAFTGEVAASMLLEFGCRYVLVGHSERRALYGETDTVVSAKFEAVQRAGLVPVLCVGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_CAMC5 (Triosephosphate isomerase OS=Campylobacter curvus (strain 525.92) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 41/119 (34.45%), Postives = 60/119 (50.42%), Query Frame = 1
Query:  319 NWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            N KCN T+ S  +    L DA L           F   D  ++    + ++ AQN +    GAFTGEI   QL + G   V++GHSERR ++GE ++ +  K  +A   G  +I C+GE
Sbjct:    6 NLKCNHTRASFAEYAKIL-DANLSADDDVSVFVPFTAFDAKEH----KFKLGAQNFYPCVSGAFTGEIGKAQLDEFGISSVLIGHSERREILGESERLLRAKFDFAAKNGWQIIYCVGE 119          
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS_BACC45.508e-1235.94Triosephosphate isomerase OS=Bacillus cereus (stra... [more]
TPIS_BACC25.508e-1235.94Triosephosphate isomerase OS=Bacillus cereus (stra... [more]
TPIS_BACC15.508e-1235.94Triosephosphate isomerase OS=Bacillus cereus (stra... [more]
TPIS_BACC05.508e-1235.94Triosephosphate isomerase OS=Bacillus cereus (stra... [more]
TPIS_BACAN5.508e-1235.94Triosephosphate isomerase OS=Bacillus anthracis GN... [more]
TPIS_ALHEH5.508e-1233.07Triosephosphate isomerase OS=Alkalilimnicola ehrli... [more]
TPIS_NITEU7.194e-1232.81Triosephosphate isomerase OS=Nitrosomonas europaea... [more]
TPIS_MYCPI7.194e-1234.13Triosephosphate isomerase (Fragment) OS=Mycoplasma... [more]
TPIS_DECAR7.194e-1230.95Triosephosphate isomerase OS=Dechloromonas aromati... [more]
TPIS_CAMC57.194e-1234.45Triosephosphate isomerase OS=Campylobacter curvus ... [more]

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Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
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