FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10307 contig Ccv1_Contig10307:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_KLULA (Triosephosphate isomerase OS=Kluyveromyces lactis GN=TPI1 PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.156e-24
Identity = 55/125 (44.00%), Postives = 79/125 (63.20%), Query Frame = 1
Query:  304 FFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQ-VKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            FF+GGN+K NG+K SI ++V  LN A +            +Y+D  V  +    ++I+AQN++    GA+TGE SVEQ+KD+G +WV+LGHSERR    E D+ + +K  +AL  G+ VI CIGE
Sbjct:    5 FFIGGNFKMNGSKASIKEIVDRLNGASIPSNVEVVIAPPAIYLDHAVALNKRKEVKISAQNAYSKASGAYTGENSVEQIKDVGAEWVILGHSERRTYFNETDEIVAEKTKFALDSGVKVILCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ASPOR (Triosephosphate isomerase OS=Aspergillus oryzae GN=tpiA PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.825e-23
Identity = 54/127 (42.52%), Postives = 80/127 (62.99%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR--IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            +FFVGGN+K NGT ESIT ++ +LN+AKL+           +Y+   +    ++  + +++QN +    GAFTGEISV QL+D    W ++GHSERR ++ E D+FI +K   A+  G+ VI CIGE
Sbjct:    4 QFFVGGNFKMNGTAESITAIIKNLNEAKLDETTEVVVSPPALYLTLAQQVADEKKKVAVSSQNVFDKPNGAFTGEISVSQLQDAKIPWTIIGHSERRVILKETDEFIARKVKAAIDGGISVIFCIGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_GRAVE (Triosephosphate isomerase, cytosolic (Fragment) OS=Gracilaria verrucosa GN=TPI1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.384e-23
Identity = 58/124 (46.77%), Postives = 74/124 (59.68%), Query Frame = 1
Query:  319 NWKCNGTKESITKLVSDLNDAKL--EXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHV--IGEDDQFIGKKAAYALSE-GLGVIACIGE 675
            NWKCN +K  I +LVS  N A                VY+D  + +L    + +AQN+W+ KGGAFTGE+    +KD+G +WV+LGHSERRH+  + E D  I  KAAYAL    LGVI CIGE
Sbjct:    1 NWKCNLSKADIAELVSAFNAAPPIDAAHVQVVVAPPAVYLDSTRQALRADFDTSAQNAWISKGGAFTGELDAAMVKDVGAEWVILGHSERRHIAQLKESDHTIAMKAAYALQHASLGVIYCIGE 124          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_TRYCR (Triosephosphate isomerase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.545e-22
Identity = 55/131 (41.98%), Postives = 78/131 (59.54%), Query Frame = 1
Query:  286 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            MAS  +     NWKCNG++  +  L+  LN A  +          F++I   K  LT+ + +IAAQN+ + + GAFTGE+S++ LKD G  WVVLGHSERR   GE ++ + +K A A + G  VI C+GE
Sbjct:    1 MASKPQPIAAANWKCNGSESLLVPLIETLNAATFDHDVQCVVAPTFLHIPMTKARLTNPKFQIAAQNA-ITRSGAFTGEVSLQILKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACAAGFHVIVCVGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_CANAL (Triosephosphate isomerase OS=Candida albicans GN=TPI1 PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.545e-22
Identity = 54/128 (42.19%), Postives = 75/128 (58.59%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYID-QVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + +FFVGGN+K NGTK+ IT ++ +LN A L            +Y+   V+ +    + I AQN +    GAFTGE    Q+ D+G  W + GHSERR +I E D+FI +K  +AL  G+ VI CIGE
Sbjct:    2 ARQFFVGGNFKANGTKQQITSIIDNLNKADLPKDVEVVICPPALYLGLAVEQNKQPTVAIGAQNVFDKSCGAFTGETCASQILDVGASWTLTGHSERRTIIKESDEFIAEKTKFALDTGVKVILCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_LEIME (Triosephosphate isomerase OS=Leishmania mexicana PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.018e-22
Identity = 54/130 (41.54%), Postives = 74/130 (56.92%), Query Frame = 1
Query:  286 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            M++  +     NWKCNGT  SI KLV   N+  +           FV+I  V+  L +   + +  + + K GAFTGE+S+  LKDIG  WV+LGHSERR   GE D+ + +K + A  +G  VIACIGE
Sbjct:    1 MSAKPQPIAAANWKCNGTTASIEKLVQVFNEHTISHDVQCVVAPTFVHIPLVQAKLRNPKYVISAENAIAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_HELVI (Triosephosphate isomerase (Fragment) OS=Heliothis virescens GN=Tpi PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.018e-22
Identity = 52/115 (45.22%), Postives = 68/115 (59.13%), Query Frame = 1
Query:  331 NGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            NG K+ +T +V  L    L+           +Y+  V++ +   I +AAQN W    GAFTGEIS   +KDIG  WV+LGHSERR + GE D  + +K A+AL  GL VIACIGE
Sbjct:    2 NGDKKQVTDIVETLKKGPLDPNVEVVIGVPAIYLAYVQSIVPGTISVAAQNCWKVAKGAFTGEISPAMIKDIGANWVILGHSERRTIFGEKDDLVAEKVAHALENGLKVIACIGE 116          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_TRYBB (Triosephosphate isomerase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 7.668e-22
Identity = 52/120 (43.33%), Postives = 74/120 (61.67%), Query Frame = 1
Query:  319 NWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            NWKCNG+++S+++L+   N   +           FV++   K  L+  +  IAAQN+ + K GAFTGE+S+  LKD G  W+VLGHSERR   GE ++ +  K A A++ G  VIACIGE
Sbjct:   11 NWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNA-IAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.708e-21
Identity = 45/71 (63.38%), Postives = 58/71 (81.69%), Query Frame = 1
Query:  463 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            I++AAQN WV KGGAFTGE+S E L ++G  WV+LGHSERR ++ E ++F+G K AYALS+GL VIAC+GE
Sbjct:    1 IQVAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRALLNETNEFVGDKVAYALSQGLKVIACVGE 71          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ENTHI (Triosephosphate isomerase OS=Entamoeba histolytica GN=TPI PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.970e-21
Identity = 57/135 (42.22%), Postives = 79/135 (58.52%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTK---ESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-----IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + KF VGGNWKCNGT    E++TK V+   DA+L           F+YI +V+  L        I ++A+N+W  K GA+TGE+ V  L D    +V+LGHSERR +  E ++ + +K   A+  GL VIACIGE
Sbjct:    3 AGKFVVGGNWKCNGTLASIETLTKGVAASVDAELAKKVEVIVGVPFIYIPKVQQILAGEANGANILVSAENAWT-KSGAYTGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKVAIDAGLKVIACIGE 136          
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS_KLULA2.156e-2444.00Triosephosphate isomerase OS=Kluyveromyces lactis ... [more]
TPIS_ASPOR1.825e-2342.52Triosephosphate isomerase OS=Aspergillus oryzae GN... [more]
TPIS_GRAVE2.384e-2346.77Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_TRYCR1.545e-2241.98Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_CANAL1.545e-2242.19Triosephosphate isomerase OS=Candida albicans GN=T... [more]
TPIS_LEIME2.018e-2241.54Triosephosphate isomerase OS=Leishmania mexicana P... [more]
TPIS_HELVI2.018e-2245.22Triosephosphate isomerase (Fragment) OS=Heliothis ... [more]
TPIS_TRYBB7.668e-2243.33Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_LACSA1.708e-2163.38Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_ENTHI4.970e-2142.22Triosephosphate isomerase OS=Entamoeba histolytica... [more]

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Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
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