FC876200

Overview
NameFC876200
Unique NameFC876200
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length362
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_RALEU (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ralstonia eutropha GN=metE PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.363e-20
Identity = 44/104 (42.31%), Postives = 67/104 (64.42%), Query Frame = 2
Query:   50 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 361
            +HI+G+PR+G +RELKFA E+FW G  +  +L+ V+A LR   W+  +  G+  + +  F+YYDQ+L  TA+LGA+P R+  +   +    YF +ARGN   PA
Sbjct:    4 THILGFPRIGERRELKFAQEAFWRGDRTEAELRDVAAQLRRRHWQLQADRGLDTVATGDFAYYDQMLSLTALLGALPRRFGLDPARLTLTQYFELARGNREQPA 107          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_RALEH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=metE PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.363e-20
Identity = 44/104 (42.31%), Postives = 67/104 (64.42%), Query Frame = 2
Query:   50 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 361
            +HI+G+PR+G +RELKFA E+FW G  +  +L+ V+A LR   W+  +  G+  + +  F+YYDQ+L  TA+LGA+P R+  +   +    YF +ARGN   PA
Sbjct:    4 THILGFPRIGERRELKFAQEAFWRGDRTEAELRDVAAQLRRRHWQLQADRGLDTVATGDFAYYDQMLSLTALLGALPRRFGLDPARLTLTQYFELARGNREQPA 107          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_MYCLE (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mycobacterium leprae GN=metE PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.779e-20
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = 2
Query:   56 IVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASV 355
            + G PR+GP+RELK A E +W  ++S  +L+ V++ LR  +W  ++ AG+  +P NTFSYYDQ+LDT  MLGA+P R      ++  D YF++ARGN  +
Sbjct:   14 VTGSPRIGPRRELKRATEGYWAKRTSRSELESVASTLRRDMWSDLAAAGLDSVPVNTFSYYDQMLDTAFMLGALPARVAQVSDDL--DQYFALARGNNDI 111          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_CHRSD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=metE PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.779e-20
Identity = 44/100 (44.00%), Postives = 65/100 (65.00%), Query Frame = 2
Query:   50 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 349
            +HI+GYPR+G  RELK A+E++W G     +L++    LR+  W+    AG+ ++    F++YDQVL+ +AMLGAVPPR+    G++  D  F MARG A
Sbjct:    4 AHILGYPRIGANRELKKAVEAYWKGDIDQAELERRGQALRAEHWQASRDAGLDFVTVGDFAFYDQVLNVSAMLGAVPPRFGAIDGDVDLDTTFRMARGRA 103          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_BURPP (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=metE PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.779e-20
Identity = 44/104 (42.31%), Postives = 70/104 (67.31%), Query Frame = 2
Query:   50 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 361
            +HI G+PR+G +RELKFA ESFW G+S  + L  V+ +LR+  W+    A + ++    F+YYDQ+L+ +A+LGA+P R+ ++   +    Y+ +ARGNA+ PA
Sbjct:    4 THIPGFPRIGAQRELKFAQESFWRGESDEQYLLGVARELRARHWQLQQDAKLDFVTVGDFAYYDQMLNLSALLGALPQRFGFDAKTLSLARYYELARGNAAQPA 107          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_STRAW (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptomyces avermitilis GN=metE PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.324e-20
Identity = 45/100 (45.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:   56 IVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASV 355
            + GYPR G  RELK A+E +W G+  A+ L+  +  LR   W+Q+++AGI  +P+  FSYYD VLDT+ M+GA+P R+         D YF+MARG   V
Sbjct:   14 VYGYPRQGRGRELKKAIEGYWKGRLDADALRTTATGLRRDTWQQLAEAGIHEVPTGDFSYYDHVLDTSVMVGAIPARHRAAVEADALDGYFAMARGTQDV 113          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_PHOLL (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Photorhabdus luminescens subsp. laumondii GN=metE PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.324e-20
Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = 2
Query:   50 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 349
            +H +G+PR+G KRELK A E++W GK S ++L +   +LR+  W+Q  QAG+  +P   F++YD VL T+ +LG VPPR+    G I  D  F +ARG A
Sbjct:    5 NHTLGFPRIGLKRELKKAQENYWAGKISQQELLETGRELRARHWEQQKQAGVDLVPVGDFAWYDHVLTTSLLLGNVPPRHQNPDGTIDLDTLFRIARGRA 104          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_SHISS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Shigella sonnei (strain Ss046) GN=metE PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.035e-20
Identity = 45/100 (45.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:   50 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 349
            +H +G+PR+G +RELK A ES+W G S+ E+L  V  +LR+  W Q  QAGI  +P   F++YD VL T+ +LG VPPR+    G +  D  F + RG A
Sbjct:    5 NHTLGFPRVGLRRELKKAQESYWAGNSTREELLTVGRELRARHWDQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPPRHQNKDGSVDIDTLFRIGRGRA 104          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_SHIFL (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Shigella flexneri GN=metE PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.035e-20
Identity = 45/100 (45.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:   50 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 349
            +H +G+PR+G +RELK A ES+W G S+ E+L  V  +LR+  W Q  QAGI  +P   F++YD VL T+ +LG VPPR+    G +  D  F + RG A
Sbjct:    5 NHTLGFPRVGLRRELKKAQESYWAGNSTREELLTVGRELRARHWDQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPPRHQNKDGSVDIDTLFRIGRGRA 104          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_SHIF8 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=metE PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.035e-20
Identity = 45/100 (45.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:   50 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 349
            +H +G+PR+G +RELK A ES+W G S+ E+L  V  +LR+  W Q  QAGI  +P   F++YD VL T+ +LG VPPR+    G +  D  F + RG A
Sbjct:    5 NHTLGFPRVGLRRELKKAQESYWAGNSTREELLTVGRELRARHWDQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPPRHQNKDGSVDIDTLFRIGRGRA 104          
The following BLAST results are available for this feature:
BLAST of FC876200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 265
Match NameE-valueIdentityDescription
METE_RALEU1.363e-2042.315-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RALEH1.363e-2042.315-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MYCLE1.779e-2045.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CHRSD1.779e-2044.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURPP1.779e-2042.315-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STRAW2.324e-2045.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PHOLL2.324e-2045.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SHISS3.035e-2045.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SHIFL3.035e-2045.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SHIF83.035e-2045.005-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC32001F02EF DevOvary1 Citrus clementina cDNA clone C32001F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876200 ID=FC876200; Name=FC876200; organism=Citrus clementina; type=EST; length=362bp
TCTCGACTCTCAATTTCTCTGCTCTTCTTTCTCTGTTTGTAAAATGGCAT
CTCACATCGTTGGATACCCACGCATGGGCCCCAAGAGGGAGCTCAAGTTC
GCGTTGGAATCCTTCTGGGATGGCAAGAGCAGCGCTGAGGATTTGCAAAA
GGTGTCCGCTGATCTCAGATCCTCCATCTGGAAACAGATGTCCCAGGCCG
GGATCAAATACATTCCCAGCAACACTTTCTCCTACTACGACCAAGTGCTC
GACACCACCGCAATGCTCGGTGCCGTGCCCCCGAGGTATAACTGGAACGG
CGGCGAGATTGGATTTGATGTTTACTTCTCCATGGCCAGAGGAAACGCCT
CTGTTCCCGCTA
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