FC876200

Overview
NameFC876200
Unique NameFC876200
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length362
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_ECODH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Escherichia coli (strain K12 / DH10B) GN=metE PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.570e-19
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:   50 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 349
            +H +G+PR+G +RELK A ES+W G S+ E+L  V  +LR+  W Q  QAGI  +P   F++YD VL T+ +LG VP R+    G +  D  F + RG A
Sbjct:    5 NHTLGFPRVGLRRELKKAQESYWAGNSTREELLAVGRELRARHWDQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPARHQNKDGSVDIDTLFRIGRGRA 104          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_ECO5E (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=metE PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.570e-19
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:   50 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 349
            +H +G+PR+G +RELK A ES+W G S+ E+L  V  +LR+  W Q  QAGI  +P   F++YD VL T+ +LG VP R+    G +  D  F + RG A
Sbjct:    5 NHTLGFPRVGLRRELKKAQESYWAGNSTREELLAVGRELRARHWDQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPARHQNKDGSVDIDTLFRIGRGRA 104          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_ECO57 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Escherichia coli O157:H7 GN=metE PE=3 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 2.570e-19
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:   50 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 349
            +H +G+PR+G +RELK A ES+W G S+ E+L  V  +LR+  W Q  QAGI  +P   F++YD VL T+ +LG VP R+    G +  D  F + RG A
Sbjct:    5 NHTLGFPRVGLRRELKKAQESYWAGNSTREELLAVGRELRARHWDQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPARHQNKDGSVDIDTLFRIGRGRA 104          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_SCHPO (Probable 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Schizosaccharomyces pombe GN=SPAC9.09 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.356e-19
Identity = 44/98 (44.90%), Postives = 60/98 (61.22%), Query Frame = 2
Query:   50 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 343
            S ++G+PR+G  RELK A E++W GK+SAE+L   +  LR   WK     G+  IPSN FS YDQ++D +     +PPRY  +G     D YF+M RG
Sbjct:    4 SAVLGFPRIGKNRELKKATEAYWSGKTSAEELLATAKQLRLEHWKLQKAQGVDIIPSNDFSLYDQIMDHSFSFNVIPPRYRLSGLS-SLDTYFAMGRG 100          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_KLEP7 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=metE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.356e-19
Identity = 43/100 (43.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:   50 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 349
            +H +G+PR+G +RELK A ES+W G ++ E+L  V  +LR+  W+Q  QAG+  +P   F++YD VL T+ +LG VP R+    G I  D  F + RG A
Sbjct:    5 NHTLGFPRVGLRRELKKAQESYWAGNATREELLAVGRELRARHWEQQKQAGVDLLPVGDFAWYDHVLTTSLLLGNVPARHQNKDGSIDIDTLFRIGRGRA 104          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_KLEP3 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Klebsiella pneumoniae (strain 342) GN=metE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.356e-19
Identity = 43/100 (43.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:   50 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 349
            +H +G+PR+G +RELK A ES+W G ++ E+L  V  +LR+  W+Q  QAG+  +P   F++YD VL T+ +LG VP R+    G I  D  F + RG A
Sbjct:    5 NHTLGFPRVGLRRELKKAQESYWAGNATREELLTVGRELRARHWEQQKQAGVDLLPVGDFAWYDHVLTTSLLLGNVPARHQNKDGSIDIDTLFRIGRGRA 104          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_LISW6 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=metE PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.383e-19
Identity = 45/101 (44.55%), Postives = 60/101 (59.41%), Query Frame = 2
Query:   41 KMASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 343
            K  S  +GYPR+G KRE K ALE FW+G  + E+L   +  LR    K+  + GI  IP   FS+YDQVLDT+   G +P R+   GG +  + YF +ARG
Sbjct:    3 KAISSNLGYPRLGEKREWKRALEKFWNGTITEEELLAETKALRLHALKKQQEKGIDLIPVGDFSFYDQVLDTSVTFGIIPKRFQHEGGNVSLNTYFDIARG 103          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_ENTS8 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=metE PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.383e-19
Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:   50 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 349
            +H +G+PR+G +RELK A ES+W GKS+ E+L  V  +LR+  W+Q   AGI  +P   F++YD VL T+ +LG VP R+    G +  D  F + RG A
Sbjct:    5 NHTLGFPRVGLRRELKKAQESYWAGKSTREELLAVGRELRARHWEQQKAAGIDLLPVGDFAWYDHVLTTSLLLGNVPARHQNADGTVDIDTLFRIGRGRA 104          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_CITK8 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=metE PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.383e-19
Identity = 43/100 (43.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:   50 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 349
            +H +G+PR+G +RELK A ES+W G ++ EDL     +LR+  W Q  QAGI  +P   F++YD VL T+ +LG VP R+  + G +  D  F + RG A
Sbjct:    5 NHTLGFPRVGLRRELKKAQESYWAGNATREDLLATGRELRARHWDQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPARHQNSDGSVDIDTLFRIGRGRA 104          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_SACD2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=metE PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.724e-19
Identity = 44/103 (42.72%), Postives = 65/103 (63.11%), Query Frame = 2
Query:   53 HIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 361
            H +G+PR+G KRELKFA E++W G+     L K +  LR++ W+    AG++++P   FSYYD VLDT+ ++G +P R   + G+   D YF +ARG A   A
Sbjct:    5 HNLGFPRIGAKRELKFACEAYWRGEIDQTQLDKTAHTLRANHWQTQLDAGVEWLPVGDFSYYDHVLDTSFLVGNIPVRAQAD-GQSKLDTYFKVARGTAKEAA 106          
The following BLAST results are available for this feature:
BLAST of FC876200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 265
Match NameE-valueIdentityDescription
METE_ECODH2.570e-1944.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ECO5E2.570e-1944.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ECO572.570e-1944.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SCHPO3.356e-1944.90Probable 5-methyltetrahydropteroyltriglutamate--ho... [more]
METE_KLEP73.356e-1943.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_KLEP33.356e-1943.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_LISW64.383e-1944.555-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ENTS84.383e-1944.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CITK84.383e-1943.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SACD25.724e-1942.725-methyltetrahydropteroyltriglutamate--homocystein... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32001F02EF DevOvary1 Citrus clementina cDNA clone C32001F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876200 ID=FC876200; Name=FC876200; organism=Citrus clementina; type=EST; length=362bp
TCTCGACTCTCAATTTCTCTGCTCTTCTTTCTCTGTTTGTAAAATGGCAT
CTCACATCGTTGGATACCCACGCATGGGCCCCAAGAGGGAGCTCAAGTTC
GCGTTGGAATCCTTCTGGGATGGCAAGAGCAGCGCTGAGGATTTGCAAAA
GGTGTCCGCTGATCTCAGATCCTCCATCTGGAAACAGATGTCCCAGGCCG
GGATCAAATACATTCCCAGCAACACTTTCTCCTACTACGACCAAGTGCTC
GACACCACCGCAATGCTCGGTGCCGTGCCCCCGAGGTATAACTGGAACGG
CGGCGAGATTGGATTTGATGTTTACTTCTCCATGGCCAGAGGAAACGCCT
CTGTTCCCGCTA
back to top