FC876201

Overview
NameFC876201
Unique NameFC876201
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876201 vs. ExPASy Swiss-Prot
Match: HUTH_BURVG (Histidine ammonia-lyase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=hutH PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 53/165 (32.12%), Postives = 81/165 (49.09%), Query Frame = 1
Query:    1 DNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLR---HLEENLKHTVKNTVSQVA 486
            DNPLI     + L GGNF   P+  + DN  LA A IG L   + + L+ D   +GLP  L   R+  ++ GF  A +  A+  SE + LA+P +        + +D  S+   ++RK A+  D  K + +  L+A  Q +DLR   H    L   ++   S+VA
Sbjct:  310 DNPLIFPDTGEVLSGGNFHAEPVAFAADNLALAAAEIGALAERRIALLI-DATLSGLPPFLV--RDGGVNSGFMIAHVTAAALASENKTLAHPASVDSLPTSANQEDHVSMATFAARKLADIADNTKHILAIELLAAAQGVDLRAPHHTSPKLAPVMETIRSKVA 471          
BLAST of FC876201 vs. ExPASy Swiss-Prot
Match: HUTH_BURM1 (Histidine ammonia-lyase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=hutH PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 53/164 (32.32%), Postives = 82/164 (50.00%), Query Frame = 1
Query:    1 DNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEEN--LKHTVKNTVSQVA 486
            DNPLI     + L GGNF   P+  + DN  LA A IG L   + + L+ D   +GLP  L   ++  ++ GF  A +  A+  SE + LA+P +        + +D  S+   ++RK A+  D  K + +  L+A  Q +DLR  E +  L   +K   S+VA
Sbjct:  310 DNPLIFPDTGEVLSGGNFHAEPVAFAADNLALAAAEIGALAERRIALLI-DATLSGLPPFLV--KDGGVNSGFMIAHVTAAALASENKTLAHPASVDSLPTSANQEDHVSMATFAARKLADIADNTKHILAIELLAAAQGVDLRENETSPKLAEVMKTIRSKVA 470          
BLAST of FC876201 vs. ExPASy Swiss-Prot
Match: HUTH_DESPS (Histidine ammonia-lyase OS=Desulfotalea psychrophila GN=hutH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 50/146 (34.25%), Postives = 74/146 (50.68%), Query Frame = 1
Query:    1 DNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNL--SGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLR 432
            DNPL+    N  + GGNF   PI +  DN  LAIA IG L   + + L+ D + +GLP  L   GG    L+ GF  A++  A+  SE + LA+P +        + +D  S+   ++R+  E  D    + +  L+A CQ ID R
Sbjct:  313 DNPLVFCKENDIISGGNFHAEPIAMVADNLALAIAEIGALPERRTALLI-DSHMSGLPPFLVDKGG----LNSGFMIAQVTAAALASENKSLAHPASVDSLPTSANQEDHVSMATFAARRLLEMADNTAGILAIELLAACQGIDFR 453          
BLAST of FC876201 vs. ExPASy Swiss-Prot
Match: HUTH_CLOTE (Histidine ammonia-lyase OS=Clostridium tetani GN=hutH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 46/144 (31.94%), Postives = 76/144 (52.78%), Query Frame = 1
Query:    1 DNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLR 432
            DNP++       + GGNF G P+    D   +  A I  +   +   L+N   N+ LP+ L+  ++  L+ GF   + A A+  SE + LA+P +     +  + +D+ S+G I++RK  + VD  K + +T L+A CQAID R
Sbjct:  314 DNPIV-TREGDVISGGNFHGEPMAQPFDFLGIGAAEIANVSERRLERLINHQLND-LPAFLA--KHGGLNSGFMITQYAAAALVSENKVLAHPASVDSIPSSANQEDLVSMGTIAARKARDIVDNAKRVLATELMAACQAIDFR 453          
BLAST of FC876201 vs. ExPASy Swiss-Prot
Match: HUTH_BURCJ (Histidine ammonia-lyase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=hutH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 52/165 (31.52%), Postives = 81/165 (49.09%), Query Frame = 1
Query:    1 DNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLR---HLEENLKHTVKNTVSQVA 486
            DNPLI     + L GGNF   P+  + DN  LA + IG L   + + L+ D   +GLP  L   ++  ++ GF  A +  A+  SE + LA+P +        + +D  S+   ++RK A+  D  K + +  L+A  Q +DLR   H    L   ++   SQVA
Sbjct:  310 DNPLIFPDTGEVLSGGNFHAEPVAFAADNLALAASEIGALAERRIALLI-DATLSGLPPFLV--KDGGVNSGFMIAHVTAAALASENKTLAHPASVDSLPTSANQEDHVSMATFAARKLADIADNTKHILAIELLAAAQGVDLRAPYHTSPKLAPVMETIRSQVA 471          
BLAST of FC876201 vs. ExPASy Swiss-Prot
Match: HUTH_BURA4 (Histidine ammonia-lyase OS=Burkholderia ambifaria (strain MC40-6) GN=hutH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 52/165 (31.52%), Postives = 80/165 (48.48%), Query Frame = 1
Query:    1 DNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLR---HLEENLKHTVKNTVSQVA 486
            DNPLI     + L GGNF   P+  + DN  LA A IG L   + + L+ D   +GLP  L   ++  ++ GF  A +  A+  SE + LA+P +        + +D  S+   ++RK A+  D  K + +  L+A  Q +DLR   H    L   ++   S VA
Sbjct:  310 DNPLIFPDTGEVLSGGNFHAEPVAFAADNLALAAAEIGALAERRIALLI-DATLSGLPPFLV--KDGGVNSGFMIAHVTAAALASENKTLAHPASVDSLPTSANQEDHVSMATFAARKLADIADNTKYILAIELLAAAQGVDLRAPYHTSPKLAPVMETIRSHVA 471          
BLAST of FC876201 vs. ExPASy Swiss-Prot
Match: HUTH_STRP8 (Histidine ammonia-lyase OS=Streptococcus pyogenes serotype M18 GN=hutH PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 52/165 (31.52%), Postives = 82/165 (49.70%), Query Frame = 1
Query:    1 DNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKV 495
            DNP+I       + GGNF G P+  S D   +AI+ IG +   +   LVN   +  LPS L   + P L+ GF   + A AS  SE + LA+P +     + ++ +D  S+G  ++RK  E +   + + +T ++A CQA+DL+     L    K       K+V
Sbjct:  312 DNPII-CKDGHVISGGNFHGEPMAQSFDFLGIAISEIGNVSERRVERLVNSQLSK-LPSFLV--KYPGLNSGFMITQYACASLASENKVLAHPASVDSIPSCENQEDFVSMGTTAARKAFEILKNSRRIVATEIMAACQALDLKPENHELGKGTKVAYDLFRKEV 472          
BLAST of FC876201 vs. ExPASy Swiss-Prot
Match: HUTH_GLOVI (Histidine ammonia-lyase OS=Gloeobacter violaceus GN=hutH PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 47/146 (32.19%), Postives = 73/146 (50.00%), Query Frame = 1
Query:    1 DNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNL--SGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLR 432
            DNPLI     + + GG+F G P+ ++ D   +A+A +  +   +   LVN  Y+NGLP  L  +GG    L  G+  A+   AS  SE + LA+P            +D  S+GL ++RK     D  + + +  L+   QA+DLR
Sbjct:  316 DNPLIFADTGQVVTGGHFHGQPVAMASDVLAIALAELADISERRTERLVNADYSNGLPMFLTEAGG----LHSGYMVAQYTAASLVSENKVLAHPACVDSIPTSAGQEDHVSMGLTAARKAVTVCDNCERVIAIELMCAAQALDLR 457          
BLAST of FC876201 vs. ExPASy Swiss-Prot
Match: HUTH_BURCM (Histidine ammonia-lyase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=hutH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 47/144 (32.64%), Postives = 73/144 (50.69%), Query Frame = 1
Query:    1 DNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLR 432
            DNPLI     + L GGNF   P+  + DN  LA A IG L   + + L+ D   +GLP  L   ++  ++ GF  A +  A+  SE + LA+P +        + +D  S+   ++RK A+  D  K + +  L+A  Q +DLR
Sbjct:  310 DNPLIFPDTGEVLSGGNFHAEPVAFAADNLALAAAEIGALAERRIALLI-DATLSGLPPFLV--KDGGVNSGFMIAHVTAAALASENKTLAHPASVDSLPTSANQEDHVSMATFAARKLADIADNTKYILAIELLAAAQGVDLR 450          
BLAST of FC876201 vs. ExPASy Swiss-Prot
Match: HUTH_PSESM (Histidine ammonia-lyase OS=Pseudomonas syringae pv. tomato GN=hutH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 58/201 (28.86%), Postives = 94/201 (46.77%), Query Frame = 1
Query:    1 DNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPC 603
            DNPL+  + N  + GGNF   P+ ++ DN  LAIA IG L   + S L+ D + + LP  L    N  ++ GF  A++  A+  SE + LA+P +        + +D  S+   + ++  E  + ++ + +   +A CQ +DLR   E LK + K    + A+ +L            F EKD   A D E     +   C
Sbjct:  318 DNPLVFAAENDVISGGNFHAEPVAMAADNLALAIAEIGSLSERRIS-LMMDKHMSQLPPFLVA--NGGVNSGFMIAQVTAAALASENKALAHPHSVDSLPTSANQEDHVSMAPAAGKRLWEMAENVRGILAVEWLAACQGLDLR---EGLKTSAK---LEQARSLLRSKVP-------FYEKDRFFAPDIEAASQLLSSTC 502          
The following BLAST results are available for this feature:
BLAST of FC876201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
HUTH_BURVG5.849e-1232.12Histidine ammonia-lyase OS=Burkholderia vietnamien... [more]
HUTH_BURM15.849e-1232.32Histidine ammonia-lyase OS=Burkholderia multivoran... [more]
HUTH_DESPS7.639e-1234.25Histidine ammonia-lyase OS=Desulfotalea psychrophi... [more]
HUTH_CLOTE9.977e-1231.94Histidine ammonia-lyase OS=Clostridium tetani GN=h... [more]
HUTH_BURCJ9.977e-1231.52Histidine ammonia-lyase OS=Burkholderia cepacia (s... [more]
HUTH_BURA49.977e-1231.52Histidine ammonia-lyase OS=Burkholderia ambifaria ... [more]
HUTH_STRP81.303e-1131.52Histidine ammonia-lyase OS=Streptococcus pyogenes ... [more]
HUTH_GLOVI1.303e-1132.19Histidine ammonia-lyase OS=Gloeobacter violaceus G... [more]
HUTH_BURCM2.223e-1132.64Histidine ammonia-lyase OS=Burkholderia ambifaria ... [more]
HUTH_PSESM2.903e-1128.86Histidine ammonia-lyase OS=Pseudomonas syringae pv... [more]

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Properties
Property NameValue
Genbank descriptionC32001F04EF DevOvary1 Citrus clementina cDNA clone C32001F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876201 ID=FC876201; Name=FC876201; organism=Citrus clementina; type=EST; length=701bp
GACAATCCCCTGATCGACGTTTCAAGGAACAAGGCCTTACATGGTGGCAA
TTTTCAGGGGACCCCAATTGGTGTCTCAATGGACAATACCCGTTTGGCTA
TTGCGGCAATAGGGAAGCTCATGTTTGCCCAATTTTCTGAACTTGTCAAC
GATTTTTACAACAATGGATTGCCGTCAAATCTGTCTGGTGGCAGGAATCC
TAGCCTGGATTATGGTTTCAAGGGCGCTGAAATTGCTATGGCTTCCTATT
GTTCGGAGCTCCAATTTCTTGCCAATCCTGTTACTAACCACGTCCAAAGT
GCTGAACAGCACAACCAAGATGTAAACTCCTTGGGATTGATCTCTTCCAG
GAAGACTGCTGAAGCAGTCGACATCCTGAAGCTCATGTCTTCCACATTCT
TGGTAGCGCTTTGCCAGGCTATTGATTTGAGACATTTGGAGGAAAATTTG
AAGCATACAGTCAAGAATACTGTCAGCCAAGTAGCTAAGAAAGTCTTAAC
CGTCGGTGCTAGTGGAGAGCTTCATCCATCAAGATTCTGTGAGAAGGATC
TGCTCAAAGCGGCTGATCGCGAACACGTCTTTGCATACATTGATGACCCC
TGCAGTGCTACCTATCCATTGATGCAAAAGCTAAGGCAAGTACTTGTTGA
GCACGCACTGAAACATGGAGAGAACGAGAAGACTGCCAACTCTTCAATCT
T
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