FC876201

Overview
NameFC876201
Unique NameFC876201
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10441 contig Ccv1_Contig10441:1285..1985. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876201 vs. ExPASy Swiss-Prot
Match: HUTH_BACC0 (Histidine ammonia-lyase OS=Bacillus cereus (strain AH820) GN=hutH PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 50/168 (29.76%), Postives = 83/168 (49.40%), Query Frame = 1
Query:    1 DNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTV 504
            DNPLI     K + GGNF G PI  +MD  ++ +A +  +   +   LVN   N+ LP  LS    P L  G    + A AS  SE + LA+P +     +  + +D  S+G I+SR   + +  ++ + S  ++   QA + R + EN+    K+   Q  ++V ++
Sbjct:  309 DNPLIFDGGEKVISGGNFHGQPIAFAMDFLKVGMAELANISERRIERLVNPQLND-LPPFLS--PEPGLQSGAMIMQYAAASLVSENKTLAHPASVDSIPSSANQEDHVSMGTIASRHAHQIIQNVRRVLSIEMICAMQAAEYRGI-ENMSTVTKSFYHQGRQQVPSI 472          
BLAST of FC876201 vs. ExPASy Swiss-Prot
Match: HUTH_BACAN (Histidine ammonia-lyase OS=Bacillus anthracis GN=hutH PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 50/168 (29.76%), Postives = 83/168 (49.40%), Query Frame = 1
Query:    1 DNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTV 504
            DNPLI     K + GGNF G PI  +MD  ++ +A +  +   +   LVN   N+ LP  LS    P L  G    + A AS  SE + LA+P +     +  + +D  S+G I+SR   + +  ++ + S  ++   QA + R + EN+    K+   Q  ++V ++
Sbjct:  309 DNPLIFDGGEKVISGGNFHGQPIAFAMDFLKVGMAELANISERRIERLVNPQLND-LPPFLS--PEPGLQSGAMIMQYAAASLVSENKTLAHPASVDSIPSSANQEDHVSMGTIASRHAHQIIQNVRRVLSIEMICAMQAAEYRGI-ENMSTVTKSFYHQGRQQVPSI 472          
BLAST of FC876201 vs. ExPASy Swiss-Prot
Match: HUTH_BACAC (Histidine ammonia-lyase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=hutH PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 50/168 (29.76%), Postives = 83/168 (49.40%), Query Frame = 1
Query:    1 DNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTV 504
            DNPLI     K + GGNF G PI  +MD  ++ +A +  +   +   LVN   N+ LP  LS    P L  G    + A AS  SE + LA+P +     +  + +D  S+G I+SR   + +  ++ + S  ++   QA + R + EN+    K+   Q  ++V ++
Sbjct:  309 DNPLIFDGGEKVISGGNFHGQPIAFAMDFLKVGMAELANISERRIERLVNPQLND-LPPFLS--PEPGLQSGAMIMQYAAASLVSENKTLAHPASVDSIPSSANQEDHVSMGTIASRHAHQIIQNVRRVLSIEMICAMQAAEYRGI-ENMSTVTKSFYHQGRQQVPSI 472          
BLAST of FC876201 vs. ExPASy Swiss-Prot
Match: HUTH_BACAA (Histidine ammonia-lyase OS=Bacillus anthracis (strain A0248) GN=hutH PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 50/168 (29.76%), Postives = 83/168 (49.40%), Query Frame = 1
Query:    1 DNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTV 504
            DNPLI     K + GGNF G PI  +MD  ++ +A +  +   +   LVN   N+ LP  LS    P L  G    + A AS  SE + LA+P +     +  + +D  S+G I+SR   + +  ++ + S  ++   QA + R + EN+    K+   Q  ++V ++
Sbjct:  309 DNPLIFDGGEKVISGGNFHGQPIAFAMDFLKVGMAELANISERRIERLVNPQLND-LPPFLS--PEPGLQSGAMIMQYAAASLVSENKTLAHPASVDSIPSSANQEDHVSMGTIASRHAHQIIQNVRRVLSIEMICAMQAAEYRGI-ENMSTVTKSFYHQGRQQVPSI 472          
BLAST of FC876201 vs. ExPASy Swiss-Prot
Match: HUTH_STRP3 (Histidine ammonia-lyase OS=Streptococcus pyogenes serotype M3 GN=hutH PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 51/165 (30.91%), Postives = 80/165 (48.48%), Query Frame = 1
Query:    1 DNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKV 495
            DNP+I       + GGNF G P+    D   +AI+ IG +   +   LVN   +  LPS L   + P L+ GF   + A AS  SE + LA+P +     + ++ +D  S+G  ++RK  E +     + +T ++A CQA+DL+     L    K       K+V
Sbjct:  312 DNPII-CKDGHVISGGNFHGEPMAQPFDFLGIAISEIGNVSERRVERLVNSQLSK-LPSFLV--KYPGLNSGFMITQYACASLASENKVLAHPASVDSIPSCENQEDFVSMGTTAARKAFEILKNSHRIVATEIMAACQALDLKSENHELGKGTKVAYDLFRKEV 472          
The following BLAST results are available for this feature:
BLAST of FC876201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
HUTH_BACC06.467e-1129.76Histidine ammonia-lyase OS=Bacillus cereus (strain... [more]
HUTH_BACAN6.467e-1129.76Histidine ammonia-lyase OS=Bacillus anthracis GN=h... [more]
HUTH_BACAC6.467e-1129.76Histidine ammonia-lyase OS=Bacillus anthracis (str... [more]
HUTH_BACAA6.467e-1129.76Histidine ammonia-lyase OS=Bacillus anthracis (str... [more]
HUTH_STRP38.446e-1130.91Histidine ammonia-lyase OS=Streptococcus pyogenes ... [more]

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Properties
Property NameValue
Genbank descriptionC32001F04EF DevOvary1 Citrus clementina cDNA clone C32001F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876201 ID=FC876201; Name=FC876201; organism=Citrus clementina; type=EST; length=701bp
GACAATCCCCTGATCGACGTTTCAAGGAACAAGGCCTTACATGGTGGCAA
TTTTCAGGGGACCCCAATTGGTGTCTCAATGGACAATACCCGTTTGGCTA
TTGCGGCAATAGGGAAGCTCATGTTTGCCCAATTTTCTGAACTTGTCAAC
GATTTTTACAACAATGGATTGCCGTCAAATCTGTCTGGTGGCAGGAATCC
TAGCCTGGATTATGGTTTCAAGGGCGCTGAAATTGCTATGGCTTCCTATT
GTTCGGAGCTCCAATTTCTTGCCAATCCTGTTACTAACCACGTCCAAAGT
GCTGAACAGCACAACCAAGATGTAAACTCCTTGGGATTGATCTCTTCCAG
GAAGACTGCTGAAGCAGTCGACATCCTGAAGCTCATGTCTTCCACATTCT
TGGTAGCGCTTTGCCAGGCTATTGATTTGAGACATTTGGAGGAAAATTTG
AAGCATACAGTCAAGAATACTGTCAGCCAAGTAGCTAAGAAAGTCTTAAC
CGTCGGTGCTAGTGGAGAGCTTCATCCATCAAGATTCTGTGAGAAGGATC
TGCTCAAAGCGGCTGATCGCGAACACGTCTTTGCATACATTGATGACCCC
TGCAGTGCTACCTATCCATTGATGCAAAAGCTAAGGCAAGTACTTGTTGA
GCACGCACTGAAACATGGAGAGAACGAGAAGACTGCCAACTCTTCAATCT
T
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