FC876205

Overview
NameFC876205
Unique NameFC876205
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: FRDA_HELPY (Fumarate reductase flavoprotein subunit OS=Helicobacter pylori GN=frdA PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 72/190 (37.89%), Postives = 99/190 (52.11%), Query Frame = 1
Query:    1 GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMA-HRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD-ERSELAPRDVVARSIDDQLKK 564
            GG    R    AD TG      +L AV ++      +     D+L  +   D  C+G    ++ T E+  ++SK TLLA+GG G +Y  TTN ++  G G A A     A + NME VQFHPTAL   G+            L+TE  RGDGG+L +    RFMP Y+ E+ ELA RDVV+R I + ++K
Sbjct:  142 GGTKKWRTCFTADATGH----TMLYAVANEALHHKVDIQDRKDMLAFIHH-DNKCYGAVVRDLITGEISAYVSKGTLLATGGYGRVYKHTTNAVICDGAGAASALETGVAKLGNMEAVQFHPTALVPSGI------------LMTEGCRGDGGVLRDKFGRRFMPAYEPEKKELASRDVVSRRILEHIQK 314          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: FRDA_HELPJ (Fumarate reductase flavoprotein subunit OS=Helicobacter pylori J99 GN=frdA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 72/190 (37.89%), Postives = 99/190 (52.11%), Query Frame = 1
Query:    1 GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMA-HRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD-ERSELAPRDVVARSIDDQLKK 564
            GG    R    AD TG      +L AV ++      +     D+L  +   D  C+G    ++ T E+  ++SK TLLA+GG G +Y  TTN ++  G G A A     A + NME VQFHPTAL   G+            L+TE  RGDGG+L +    RFMP Y+ E+ ELA RDVV+R I + ++K
Sbjct:  142 GGTKKWRTCFTADATGH----TMLYAVANEALHHKVDIQDRKDMLAFIHH-DNKCYGAVVRDLITGEISAYVSKGTLLATGGYGRVYKHTTNAVICDGAGAASALETGVAKLGNMEAVQFHPTALVPSGI------------LMTEGCRGDGGVLRDKFGRRFMPAYEPEKKELASRDVVSRRILEHIQK 314          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_BACSU (Succinate dehydrogenase flavoprotein subunit OS=Bacillus subtilis GN=sdhA PE=3 SV=4)

HSP 1 Score: 96.2857 bits (238), Expect = 1.733e-19
Identity = 69/250 (27.60%), Postives = 114/250 (45.60%), Query Frame = 1
Query:    1 GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLG-------MERFMPLYDERSELAPRDVVARSIDD-----QLKKRNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            GG  HHR  +A   TG+++  AL E V       +   +   + L  +   D  C G+   N+   ++  F S   ++A+GG G I+  +TN ++ TG   ++ ++  A  +N EF+Q HPTA+  +          +   L++E+ RG+GG ++          +E   P Y     L PRD+  R I D     +L    E  V LD+SH+  +++      I     K+ G D  + P+   PA HY
Sbjct:  117 GGTQHHRTAYAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDDRTCRGIVAQNLTNMQIESFRSDAVIMATGGPGIIFGKSTNSMINTGSAASIVYQQGAYYANGEFIQIHPTAIPGD----------DKLRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAY---GNLVPRDIATREIFDVCVNQKLGINGENMVYLDLSHKDPKELDIKLGGIIEIYEKFMGDDPRKLPMKIFPAVHY 353          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: NADB_BACHD (L-aspartate oxidase OS=Bacillus halodurans GN=nadB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.467e-18
Identity = 70/200 (35.00%), Postives = 104/200 (52.00%), Query Frame = 1
Query:    1 GGHSHHRIVHAADM-TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERSELAPRDVVARSIDDQLKKRNEKYVLLDIS 597
            G H   RIVH     TG+ + RAL +A+ ++  I++ +       +   D         + + VET +   F + VT++A+GG G +Y  T+N   ATGDG+A+A+R+ A IS++EF+QFHPT        +     +E   LI+EAVRG+GG L     ER          L  RDVV+R I  Q  +R    V LD++
Sbjct:  114 GAHGTRRIVHVNGAETGKAVMRALWKAIKNE--ITLLDRTCVYRFIKNKD---------EIIGVETDQGSLF-APVTIVATGGCGQMYSVTSNGKEATGDGIALAYRSGAAISDVEFIQFHPT--------VYTGNEKEKGLLISEAVRGEGGQLITSAGERL-------QSLKSRDVVSREIFRQ--EREGHTVHLDLT 284          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: NADB_PYRAB (L-aspartate oxidase OS=Pyrococcus abyssi GN=nadB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.269e-11
Identity = 72/242 (29.75%), Postives = 101/242 (41.74%), Query Frame = 1
Query:    1 GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHH---FAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRA--QAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERSELAPRDVVARSIDDQLKKRNEKYVLLDISHRPTEKILSHFPNIAAECLKYGLDITRQPIPCGPAAHY 711
            GGHSH R+      TG+ +             I + E H     ++ +        + +G         E+++F     ++A+GG   +Y  T    V    G+ +   A     + +MEFVQFHPT                 ++LITEAVRG G  L     ERF+      +EL  RDVVAR+I   LK    K V LD   R  E     FP + +   K G+D  +  IP  P AHY
Sbjct:  106 GGHSHPRVFTIKSETGKHV-------------IPILEKHARELGVNFVRGFVEEIGIKNGKLAGVFLNGELLKF--DAVVVATGGFSGLYRFTAG--VKENIGLLIGDLALKGVPLRDMEFVQFHPTGFIG-----------RRTYLITEAVRGAGAKLVTGDGERFV------NELETRDVVARAI--YLKMLEGKGVFLDA--RGIEDFKDRFPYVYSVLKKEGIDPGKDLIPVTPVAHY 309          
The following BLAST results are available for this feature:
BLAST of FC876205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
FRDA_HELPY6.364e-2237.89Fumarate reductase flavoprotein subunit OS=Helicob... [more]
FRDA_HELPJ6.364e-2237.89Fumarate reductase flavoprotein subunit OS=Helicob... [more]
DHSA_BACSU1.733e-1927.60Succinate dehydrogenase flavoprotein subunit OS=Ba... [more]
NADB_BACHD1.467e-1835.00L-aspartate oxidase OS=Bacillus halodurans GN=nadB... [more]
NADB_PYRAB2.269e-1129.75L-aspartate oxidase OS=Pyrococcus abyssi GN=nadB P... [more]

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Properties
Property NameValue
Genbank descriptionC32001F10EF DevOvary1 Citrus clementina cDNA clone C32001F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876205 ID=FC876205; Name=FC876205; organism=Citrus clementina; type=EST; length=712bp
GGGGGACACTCCCATCACAGAATCGTCCATGCTGCAGATATGACTGGAAG
GGAGATCGAGCGGGCTCTTTTGGAAGCTGTTGTCAGTGACCCTAATATCT
CAGTGTTCGAGCATCACTTTGCGATAGATTTGCTAACTACTCTGGATGGT
CCTGATGCAGTTTGTCACGGTGTTGACACTTTAAATGTTGAAACACAAGA
GGTGGTACGATTCATTTCAAAGGTGACCTTACTTGCATCAGGTGGAGCTG
GGCATATTTATCCATCGACAACAAATCCTCTGGTGGCCACTGGAGATGGG
ATGGCTATGGCCCACCGAGCTCAAGCAGTGATTTCAAACATGGAATTTGT
GCAGTTCCACCCAACTGCCTTAGCTGATGAGGGCCTTCCCATCAAACCAA
AGAAAACTCGAGAGAATTCATTTCTCATCACTGAAGCTGTCAGGGGTGAT
GGAGGCATCCTTTACAATTTAGGCATGGAACGGTTCATGCCCCTGTATGA
TGAGAGATCTGAGCTTGCTCCTAGGGATGTGGTGGCAAGAAGTATAGATG
ACCAGCTTAAAAAGCGTAATGAGAAGTATGTGCTCCTTGATATAAGTCAC
AGGCCCACGGAAAAAATACTGTCCCACTTTCCCAACATAGCTGCTGAATG
CCTTAAGTATGGACTGGACATAACCCGCCAGCCAATTCCCTGTGGTCCTG
CTGCACATTACA
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